Literature DB >> 22461544

Genome sequence of the halophilic archaeon Halococcus hamelinensis.

Brendan P Burns1, Reema K Gudhka, Brett A Neilan.   

Abstract

Halococcus hamelinensis was isolated from hypersaline stromatolites in Shark Bay, Australia. Here we report the genome sequence (3,133,046 bp) of H. hamelinensis, which provides insights into the ecology, evolution, and adaptation of this novel microorganism.

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Mesh：

Year:  2012        PMID： 22461544      PMCID： PMC3318460          DOI： 10.1128/JB.06599-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  12 in total

1.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

2.  Analysis of intergenic spacer region length polymorphisms to investigate the halophilic archaeal diversity of stromatolites and microbial mats.

Authors:  S Leuko; F Goh; M A Allen; B P Burns; M R Walter; B A Neilan
Journal:  Extremophiles       Date:  2006-11-03       Impact factor: 2.395

3.  Determining the specific microbial populations and their spatial distribution within the stromatolite ecosystem of Shark Bay.

Authors:  Falicia Goh; Michelle A Allen; Stefan Leuko; Tomohiro Kawaguchi; Alan W Decho; Brendan P Burns; Brett A Neilan
Journal:  ISME J       Date:  2008-12-18       Impact factor: 10.302

4.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

5.  Halococcus hamelinensis sp. nov., a novel halophilic archaeon isolated from stromatolites in Shark Bay, Australia.

Authors:  Falicia Goh; Stefan Leuko; Michelle A Allen; John P Bowman; Masahiro Kamekura; Brett A Neilan; Brendan P Burns
Journal:  Int J Syst Evol Microbiol       Date:  2006-06       Impact factor: 2.747

6.  Host specificity and phylogeography of the prochlorophyte Prochloron sp., an obligate symbiont in didemnid ascidians.

Authors:  Julia Münchhoff; Euichi Hirose; Tadashi Maruyama; Michio Sunairi; Brendan P Burns; Brett A Neilan
Journal:  Environ Microbiol       Date:  2007-04       Impact factor: 5.491

7.  Bacterial, archaeal and eukaryotic diversity of smooth and pustular microbial mat communities in the hypersaline lagoon of Shark Bay.

Authors:  M A Allen; F Goh; B P Burns; B A Neilan
Journal:  Geobiology       Date:  2009-01       Impact factor: 4.407

8.  The integrated microbial genomes (IMG) system.

Authors:  Victor M Markowitz; Frank Korzeniewski; Krishna Palaniappan; Ernest Szeto; Greg Werner; Anu Padki; Xueling Zhao; Inna Dubchak; Philip Hugenholtz; Iain Anderson; Athanasios Lykidis; Konstantinos Mavromatis; Natalia Ivanova; Nikos C Kyrpides
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

9.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
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  6 in total

1.  Unravelling core microbial metabolisms in the hypersaline microbial mats of Shark Bay using high-throughput metagenomics.

Authors:  Rendy Ruvindy; Richard Allen White; Brett Anthony Neilan; Brendan Paul Burns
Journal:  ISME J       Date:  2015-05-29       Impact factor: 10.302

Review 2.  Engineering salinity tolerance in plants: progress and prospects.

Authors:  Shabir Hussain Wani; Vinay Kumar; Tushar Khare; Rajasheker Guddimalli; Maheshwari Parveda; Katalin Solymosi; Penna Suprasanna; P B Kavi Kishor
Journal:  Planta       Date:  2020-03-09       Impact factor: 4.116

3.  Properties of Halococcus salifodinae, an Isolate from Permian Rock Salt Deposits, Compared with Halococci from Surface Waters.

Authors:  Andrea Legat; Ewald B M Denner; Marion Dornmayr-Pfaffenhuemer; Peter Pfeiffer; Burkhard Knopf; Harald Claus; Claudia Gruber; Helmut König; Gerhard Wanner; Helga Stan-Lotter
Journal:  Life (Basel)       Date:  2013-02-28

4.  Phylogenetically driven sequencing of extremely halophilic archaea reveals strategies for static and dynamic osmo-response.

Authors:  Erin A Becker; Phillip M Seitzer; Andrew Tritt; David Larsen; Megan Krusor; Andrew I Yao; Dongying Wu; Dominique Madern; Jonathan A Eisen; Aaron E Darling; Marc T Facciotti
Journal:  PLoS Genet       Date:  2014-11-13       Impact factor: 5.917

5.  Thermophilic and halophilic β-agarase from a halophilic archaeon Halococcus sp. 197A.

Authors:  Hiroaki Minegishi; Yasuhiro Shimane; Akinobu Echigo; Yukari Ohta; Yuji Hatada; Masahiro Kamekura; Tadashi Maruyama; Ron Usami
Journal:  Extremophiles       Date:  2013-08-15       Impact factor: 2.395

6.  The Complete Genome and Physiological Analysis of the Microbialite-Dwelling Agrococcus pavilionensis sp. nov; Reveals Genetic Promiscuity and Predicted Adaptations to Environmental Stress.

Authors:  Richard Allen White; Greg Gavelis; Sarah A Soles; Emma Gosselin; Greg F Slater; Darlene S S Lim; Brian Leander; Curtis A Suttle
Journal:  Front Microbiol       Date:  2018-10-15       Impact factor: 5.640
  6 in total

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