Literature DB >> 22456446

Viral clones from the GOS expedition with an unusual photosystem-I gene cassette organization.

Oded Béjà1, Svetlana Fridman, Fabian Glaser.   

Abstract

Cyanobacteria have a key role in marine photosynthesis, which contributes to the global carbon cycle and to the world oxygen supply. Genes encoding for photosystem-II (PSII) and photosystem-I (PSI) reaction centers are found in different cyanophage genomes, and it was suggested that the horizontal transfer of these genes might be involved in increasing phage fitness. We have further analyzed a rare viral Global Ocean Sampling (GOS) clone containing PSI genes. This clone contains the unusual PSI gene organization psaD->C->A, as opposed to the more frequently observed viral psaJF->C->A->B->K->E->D organization, and was detected only once in the GOS metagenome. Our analyses identified more occurrences with similar arrangement and indicate that this PSI viral gene organization (now psaD->C->A->B), although rare, is authentic and represents a new PSI gene arrangement.

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Year:  2012        PMID: 22456446      PMCID: PMC3400403          DOI: 10.1038/ismej.2012.23

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  22 in total

Review 1.  Prochlorococcus, a marine photosynthetic prokaryote of global significance.

Authors:  F Partensky; W R Hess; D Vaulot
Journal:  Microbiol Mol Biol Rev       Date:  1999-03       Impact factor: 11.056

2.  Marine ecosystems: bacterial photosynthesis genes in a virus.

Authors:  Nicholas H Mann; Annabel Cook; Andrew Millard; Shaun Bailey; Martha Clokie
Journal:  Nature       Date:  2003-08-14       Impact factor: 49.962

3.  Transfer of photosynthesis genes to and from Prochlorococcus viruses.

Authors:  Debbie Lindell; Matthew B Sullivan; Zackary I Johnson; Andrew C Tolonen; Forest Rohwer; Sallie W Chisholm
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-15       Impact factor: 11.205

4.  Genetic organization of the psbAD region in phages infecting marine Synechococcus strains.

Authors:  Andrew Millard; Martha R J Clokie; David A Shub; Nicholas H Mann
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-19       Impact factor: 11.205

5.  MUSCLE: multiple sequence alignment with high accuracy and high throughput.

Authors:  Robert C Edgar
Journal:  Nucleic Acids Res       Date:  2004-03-19       Impact factor: 16.971

6.  Photosynthesis genes in marine viruses yield proteins during host infection.

Authors:  Debbie Lindell; Jacob D Jaffe; Zackary I Johnson; George M Church; Sallie W Chisholm
Journal:  Nature       Date:  2005-10-12       Impact factor: 49.962

7.  Potential photosynthesis gene recombination between Prochlorococcus and Synechococcus via viral intermediates.

Authors:  Gil Zeidner; Joseph P Bielawski; Michael Shmoish; David J Scanlan; Gazalah Sabehi; Oded Béjà
Journal:  Environ Microbiol       Date:  2005-10       Impact factor: 5.491

8.  Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts.

Authors:  Matthew B Sullivan; Debbie Lindell; Jessica A Lee; Luke R Thompson; Joseph P Bielawski; Sallie W Chisholm
Journal:  PLoS Biol       Date:  2006-07       Impact factor: 8.029

9.  The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific.

Authors:  Douglas B Rusch; Aaron L Halpern; Granger Sutton; Karla B Heidelberg; Shannon Williamson; Shibu Yooseph; Dongying Wu; Jonathan A Eisen; Jeff M Hoffman; Karin Remington; Karen Beeson; Bao Tran; Hamilton Smith; Holly Baden-Tillson; Clare Stewart; Joyce Thorpe; Jason Freeman; Cynthia Andrews-Pfannkoch; Joseph E Venter; Kelvin Li; Saul Kravitz; John F Heidelberg; Terry Utterback; Yu-Hui Rogers; Luisa I Falcón; Valeria Souza; Germán Bonilla-Rosso; Luis E Eguiarte; David M Karl; Shubha Sathyendranath; Trevor Platt; Eldredge Bermingham; Victor Gallardo; Giselle Tamayo-Castillo; Michael R Ferrari; Robert L Strausberg; Kenneth Nealson; Robert Friedman; Marvin Frazier; J Craig Venter
Journal:  PLoS Biol       Date:  2007-03       Impact factor: 8.029

10.  Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations.

Authors:  Matthew B Sullivan; Maureen L Coleman; Peter Weigele; Forest Rohwer; Sallie W Chisholm
Journal:  PLoS Biol       Date:  2005-04-19       Impact factor: 8.029

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  8 in total

Review 1.  Challenges of metagenomics and single-cell genomics approaches for exploring cyanobacterial diversity.

Authors:  Michelle Davison; Eric Hall; Richard Zare; Devaki Bhaya
Journal:  Photosynth Res       Date:  2014-12-17       Impact factor: 3.573

Review 2.  Shedding new light on viral photosynthesis.

Authors:  Richard J Puxty; Andrew D Millard; David J Evans; David J Scanlan
Journal:  Photosynth Res       Date:  2014-11-09       Impact factor: 3.573

Review 3.  The evolution of photosystem I in light of phage-encoded reaction centres.

Authors:  Yuval Mazor; Ilanit Greenberg; Hila Toporik; Oded Beja; Nathan Nelson
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2012-12-19       Impact factor: 6.237

4.  Global abundance of microbial rhodopsins.

Authors:  Omri M Finkel; Oded Béjà; Shimshon Belkin
Journal:  ISME J       Date:  2012-10-11       Impact factor: 10.302

5.  Diversity of viral photosystem-I psaA genes.

Authors:  Gur Hevroni; Hagay Enav; Forest Rohwer; Oded Béjà
Journal:  ISME J       Date:  2014-12-23       Impact factor: 10.302

6.  Closing the gaps on the viral photosystem-I psaDCAB gene organization.

Authors:  Sheila Roitman; José Flores-Uribe; Alon Philosof; Ben Knowles; Forest Rohwer; J Cesar Ignacio-Espinoza; Matthew B Sullivan; Francisco M Cornejo-Castillo; Pablo Sánchez; Silvia G Acinas; Chris L Dupont; Oded Béjà
Journal:  Environ Microbiol       Date:  2015-10-14       Impact factor: 5.491

7.  The evolutionary divergence of psbA gene in Synechococcus and their myoviruses in the East China Sea.

Authors:  Qiang Zheng; Nianzhi Jiao; Rui Zhang; Jingjing Wei; Fei Zhang
Journal:  PLoS One       Date:  2014-01-23       Impact factor: 3.240

8.  Cyanophage-encoded lipid desaturases: oceanic distribution, diversity and function.

Authors:  Sheila Roitman; Ellen Hornung; José Flores-Uribe; Itai Sharon; Ivo Feussner; Oded Béjà
Journal:  ISME J       Date:  2017-10-13       Impact factor: 11.217

  8 in total

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