Literature DB >> 22450044

Circular dichroism and guanine quadruplexes.

Michaela Vorlíčková1, Iva Kejnovská, Janos Sagi, Daniel Renčiuk, Klára Bednářová, Jitka Motlová, Jaroslav Kypr.   

Abstract

Circular dichroism (CD) is remarkably sensitive to the conformational states of nucleic acids; therefore, CD spectroscopy has been used to study most features of DNA and RNA structures. Quadruplexes are among the significant noncanonical nucleic acids architectures that have received special attentions recently. This article presents examples on the contribution of CD spectroscopy to our knowledge of quadruplex structures and their polymorphism. The examples were selected to demonstrate the potential of this simple method in the quadruplex field. As CD spectroscopy detects only the global feature of a macromolecule, it should preferably be used in combination with other techniques. On the other hand, CD spectroscopy, often as a pioneering approach, can reveal the formation of particular structural arrangements, to search for the conditions stabilizing the structures, to follow the transitions between various structural states, to explore kinetics of their appearance, to determine thermodynamic parameters and also detect formation of higher order structures. This article aims to show that CD spectroscopy is an important complementary technique to NMR spectroscopy and X-ray diffraction in quadruplex studies.
Copyright © 2012 Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22450044     DOI: 10.1016/j.ymeth.2012.03.011

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  113 in total

1.  ESI-MS Investigation of an Equilibrium between a Bimolecular Quadruplex DNA and a Duplex DNA/RNA Hybrid.

Authors:  Monica L Birrento; Tracy M Bryan; Siritron Samosorn; Jennifer L Beck
Journal:  J Am Soc Mass Spectrom       Date:  2015-04-24       Impact factor: 3.109

2.  Interaction of hemin with quadruplex DNA.

Authors:  Maryam Ghahremani Nasab; Leila Hassani; Sara Mohammadi Nejad; Davood Norouzi
Journal:  J Biol Phys       Date:  2016-10-17       Impact factor: 1.365

3.  The RAD17 Promoter Sequence Contains a Potential Tail-Dependent G-Quadruplex That Downregulates Gene Expression upon Oxidative Modification.

Authors:  Judy Zhu; Aaron M Fleming; Cynthia J Burrows
Journal:  ACS Chem Biol       Date:  2018-08-15       Impact factor: 5.100

4.  AID Recognizes Structured DNA for Class Switch Recombination.

Authors:  Qi Qiao; Li Wang; Fei-Long Meng; Joyce K Hwang; Frederick W Alt; Hao Wu
Journal:  Mol Cell       Date:  2017-07-27       Impact factor: 17.970

5.  Shape matters: size-exclusion HPLC for the study of nucleic acid structural polymorphism.

Authors:  Eric Largy; Jean-Louis Mergny
Journal:  Nucleic Acids Res       Date:  2014-08-20       Impact factor: 16.971

6.  Multimerization rules for G-quadruplexes.

Authors:  Sofia Kolesnikova; Martin Hubálek; Lucie Bednárová; Josef Cvacka; Edward A Curtis
Journal:  Nucleic Acids Res       Date:  2017-09-06       Impact factor: 16.971

7.  G-quadruplex ligands targeting telomeres do not inhibit HIV promoter activity and cooperate with latency reversing agents in killing latently infected cells.

Authors:  Dorota Piekna-Przybylska; Robert A Bambara; Sanjay B Maggirwar; Stephen Dewhurst
Journal:  Cell Cycle       Date:  2020-08-17       Impact factor: 4.534

8.  The Consequences of Overlapping G-Quadruplexes and i-Motifs in the Platelet-Derived Growth Factor Receptor β Core Promoter Nuclease Hypersensitive Element Can Explain the Unexpected Effects of Mutations and Provide Opportunities for Selective Targeting of Both Structures by Small Molecules To Downregulate Gene Expression.

Authors:  Robert V Brown; Ting Wang; Venkateshwar Reddy Chappeta; Guanhui Wu; Buket Onel; Reena Chawla; Hector Quijada; Sara M Camp; Eddie T Chiang; Quinea R Lassiter; Carmen Lee; Shivani Phanse; Megan A Turnidge; Ping Zhao; Joe G N Garcia; Vijay Gokhale; Danzhou Yang; Laurence H Hurley
Journal:  J Am Chem Soc       Date:  2017-05-19       Impact factor: 15.419

9.  Homologous PNA Hybridization to Noncanonical DNA G-Quadruplexes.

Authors:  Karen A Kormuth; John L Woolford; Bruce A Armitage
Journal:  Biochemistry       Date:  2016-03-16       Impact factor: 3.162

10.  RNA Helicase Associated with AU-rich Element (RHAU/DHX36) Interacts with the 3'-Tail of the Long Non-coding RNA BC200 (BCYRN1).

Authors:  Evan P Booy; Ewan K S McRae; Ryan Howard; Soumya R Deo; Emmanuel O Ariyo; Edis Dzananovic; Markus Meier; Jörg Stetefeld; Sean A McKenna
Journal:  J Biol Chem       Date:  2016-01-05       Impact factor: 5.157

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.