Literature DB >> 22449497

Scaling down the size and increasing the throughput of glycosyltransferase assays: activity changes on stem cell differentiation.

Shilpa A Patil1, E V Chandrasekaran, Khushi L Matta, Abhirath Parikh, Emmanuel S Tzanakakis, Sriram Neelamegham.   

Abstract

Glycosyltransferases (glycoTs) catalyze the transfer of monosaccharides from nucleotide-sugars to carbohydrate-, lipid-, and protein-based acceptors. We examined strategies to scale down and increase the throughput of glycoT enzymatic assays because traditional methods require large reaction volumes and complex chromatography. Approaches tested used (i) microarray pin printing, an appropriate method when glycoT activity was high; (ii) microwells and microcentrifuge tubes, a suitable method for studies with cell lysates when enzyme activity was moderate; and (iii) C(18) pipette tips and solvent extraction, a method that enriched reaction product when the extent of reaction was low. In all cases, reverse-phase thin layer chromatography (RP-TLC) coupled with phosphorimaging quantified the reaction rate. Studies with mouse embryonic stem cells (mESCs) demonstrated an increase in overall β(1,3)galactosyltransferase and α(2,3)sialyltransferase activity and a decrease in α(1,3)fucosyltransferases when these cells differentiate toward cardiomyocytes. Enzymatic and lectin binding data suggest a transition from Lewis(x)-type structures in mESCs to sialylated Galβ1,3GalNAc-type glycans on differentiation, with more prominent changes in enzyme activity occurring at later stages when embryoid bodies differentiated toward cardiomyocytes. Overall, simple, rapid, quantitative, and scalable glycoT activity analysis methods are presented. These use a range of natural and synthetic acceptors for the analysis of complex biological specimens that have limited availability.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22449497      PMCID: PMC3371656          DOI: 10.1016/j.ab.2012.03.009

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  43 in total

Review 1.  Glycans as receptors for influenza pathogenesis.

Authors:  Karthik Viswanathan; Aarthi Chandrasekaran; Aravind Srinivasan; Rahul Raman; V Sasisekharan; Ram Sasisekharan
Journal:  Glycoconj J       Date:  2010-08-24       Impact factor: 2.916

2.  Cardiac cell generation from encapsulated embryonic stem cells in static and scalable culture systems.

Authors:  Donghui Jing; Abhirath Parikh; Emmanuel S Tzanakakis
Journal:  Cell Transplant       Date:  2010-06-29       Impact factor: 4.064

3.  Propagation of embryonic stem cells in stirred suspension without serum.

Authors:  Daniel E Kehoe; Lye T Lock; Abhirath Parikh; Emmanuel S Tzanakakis
Journal:  Biotechnol Prog       Date:  2008 Nov-Dec

4.  Enzyme microarrays assembled by acoustic dispensing technology.

Authors:  E Y Wong; S L Diamond
Journal:  Anal Biochem       Date:  2008-06-20       Impact factor: 3.365

5.  MALDI-TOF mass spectrometric analysis of enzyme activity and lectin trapping on an array of N-glycans.

Authors:  Antonio Sanchez-Ruiz; Sonia Serna; Nerea Ruiz; Manuel Martin-Lomas; Niels-Christian Reichardt
Journal:  Angew Chem Int Ed Engl       Date:  2011-01-14       Impact factor: 15.336

Review 6.  Mass spectrometry and glycomics.

Authors:  Joseph Zaia
Journal:  OMICS       Date:  2010-08

7.  Regulated and aberrant glycosylation modulate cardiac electrical signaling.

Authors:  Marty L Montpetit; Patrick J Stocker; Tara A Schwetz; Jean M Harper; Sarah A Norring; Lana Schaffer; Simon J North; Jihye Jang-Lee; Timothy Gilmartin; Steven R Head; Stuart M Haslam; Anne Dell; Jamey D Marth; Eric S Bennett
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-07       Impact factor: 11.205

8.  Universal phosphatase-coupled glycosyltransferase assay.

Authors:  Zhengliang L Wu; Cheryl M Ethen; Brittany Prather; Miranda Machacek; Weiping Jiang
Journal:  Glycobiology       Date:  2010-11-15       Impact factor: 4.313

9.  A high-throughput pH indicator assay for screening glycosyltransferase saturation mutagenesis libraries.

Authors:  Mattias Persson; Monica M Palcic
Journal:  Anal Biochem       Date:  2008-03-07       Impact factor: 3.365

10.  Glycoproteomic analysis of embryonic stem cells: identification of potential glycobiomarkers using lectin affinity chromatography of glycopeptides.

Authors:  Gerardo Alvarez-Manilla; Nicole L Warren; James Atwood; Ron Orlando; Stephen Dalton; Michael Pierce
Journal:  J Proteome Res       Date:  2010-05-07       Impact factor: 4.466

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  8 in total

1.  A systematic analysis of acceptor specificity and reaction kinetics of five human α(2,3)sialyltransferases: Product inhibition studies illustrate reaction mechanism for ST3Gal-I.

Authors:  Rohitesh Gupta; Khushi L Matta; Sriram Neelamegham
Journal:  Biochem Biophys Res Commun       Date:  2015-12-13       Impact factor: 3.575

2.  Robustness in glycosylation systems: effect of modified monosaccharides, acceptor decoys and azido sugars on cellular nucleotide-sugar levels and pattern of N-linked glycosylation.

Authors:  Virginia Del Solar; Rohitesh Gupta; Yusen Zhou; Gabrielle Pawlowski; Khushi L Matta; Sriram Neelamegham
Journal:  Mol Omics       Date:  2020-04-30

3.  Overexpression of α2,3sialyl T-antigen in breast cancer determined by miniaturized glycosyltransferase assays and confirmed using tissue microarray immunohistochemical analysis.

Authors:  Shilpa A Patil; Wiam Bshara; Carl Morrison; E V Chandrasekaran; Khushi L Matta; Sriram Neelamegham
Journal:  Glycoconj J       Date:  2014-10       Impact factor: 2.916

Review 4.  Multi-level regulation of cellular glycosylation: from genes to transcript to enzyme to structure.

Authors:  Sriram Neelamegham; Lara K Mahal
Journal:  Curr Opin Struct Biol       Date:  2016-10-13       Impact factor: 6.809

5.  Competition between core-2 GlcNAc-transferase and ST6GalNAc-transferase regulates the synthesis of the leukocyte selectin ligand on human P-selectin glycoprotein ligand-1.

Authors:  Chi Y Lo; Aristotelis Antonopoulos; Rohitesh Gupta; Jun Qu; Anne Dell; Stuart M Haslam; Sriram Neelamegham
Journal:  J Biol Chem       Date:  2013-04-02       Impact factor: 5.157

6.  Using CRISPR-Cas9 to quantify the contributions of O-glycans, N-glycans and Glycosphingolipids to human leukocyte-endothelium adhesion.

Authors:  Gino Stolfa; Nandini Mondal; Yuqi Zhu; Xinheng Yu; Alexander Buffone; Sriram Neelamegham
Journal:  Sci Rep       Date:  2016-07-26       Impact factor: 4.379

7.  Sialylation of Glycosylphosphatidylinositol (GPI) Anchors of Mammalian Prions Is Regulated in a Host-, Tissue-, and Cell-specific Manner.

Authors:  Elizaveta Katorcha; Saurabh Srivastava; Nina Klimova; Ilia V Baskakov
Journal:  J Biol Chem       Date:  2016-06-17       Impact factor: 5.157

8.  Silencing α1,3-fucosyltransferases in human leukocytes reveals a role for FUT9 enzyme during E-selectin-mediated cell adhesion.

Authors:  Alexander Buffone; Nandini Mondal; Rohitesh Gupta; Kyle P McHugh; Joseph T Y Lau; Sriram Neelamegham
Journal:  J Biol Chem       Date:  2012-11-28       Impact factor: 5.157

  8 in total

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