Literature DB >> 22445227

Mapping membrane protein structure with fluorescence.

Justin W Taraska1.   

Abstract

Membrane proteins regulate many cellular processes including signaling cascades, ion transport, membrane fusion, and cell-to-cell communications. Understanding the architecture and conformational fluctuations of these proteins is critical to understanding their regulation and functions. Fluorescence methods including intensity mapping, fluorescence resonance energy transfer (FRET), and photo-induced electron transfer, allow for targeted measurements of domains within membrane proteins. These methods can reveal how a protein is structured and how it transitions between different conformational states. Here, I will review recent work done using fluorescence to map the structures of membrane proteins, focusing on how each of these methods can be applied to understanding the dynamic nature of individual membrane proteins and protein complexes. Published by Elsevier Ltd.

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Year:  2012        PMID: 22445227      PMCID: PMC3498957          DOI: 10.1016/j.sbi.2012.02.004

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  56 in total

1.  Subunit organization and functional transitions in Ci-VSP.

Authors:  Susy C Kohout; Maximilian H Ulbrich; Sarah C Bell; Ehud Y Isacoff
Journal:  Nat Struct Mol Biol       Date:  2007-12-16       Impact factor: 15.369

2.  A hierarchy of timescales in protein dynamics is linked to enzyme catalysis.

Authors:  Katherine A Henzler-Wildman; Ming Lei; Vu Thai; S Jordan Kerns; Martin Karplus; Dorothee Kern
Journal:  Nature       Date:  2007-11-18       Impact factor: 49.962

Review 3.  Dynamic personalities of proteins.

Authors:  Katherine Henzler-Wildman; Dorothee Kern
Journal:  Nature       Date:  2007-12-13       Impact factor: 49.962

4.  Fluorescence detection of the movement of single KcsA subunits reveals cooperativity.

Authors:  Rikard Blunck; Hugo McGuire; H Clark Hyde; Francisco Bezanilla
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-11       Impact factor: 11.205

5.  Closing in on the resting state of the Shaker K(+) channel.

Authors:  Medha M Pathak; Vladimir Yarov-Yarovoy; Gautam Agarwal; Benoît Roux; Patrick Barth; Susy Kohout; Francesco Tombola; Ehud Y Isacoff
Journal:  Neuron       Date:  2007-10-04       Impact factor: 17.173

6.  Coupling between the voltage-sensing and phosphatase domains of Ci-VSP.

Authors:  Carlos A Villalba-Galea; Francesco Miceli; Maurizio Taglialatela; Francisco Bezanilla
Journal:  J Gen Physiol       Date:  2009-07       Impact factor: 4.086

7.  Effect of flexibility and cis residues in single-molecule FRET studies of polyproline.

Authors:  Robert B Best; Kusai A Merchant; Irina V Gopich; Benjamin Schuler; Ad Bax; William A Eaton
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-20       Impact factor: 11.205

8.  Structure of acid-sensing ion channel 1 at 1.9 A resolution and low pH.

Authors:  Jayasankar Jasti; Hiroyasu Furukawa; Eric B Gonzales; Eric Gouaux
Journal:  Nature       Date:  2007-09-20       Impact factor: 49.962

9.  A nano-positioning system for macromolecular structural analysis.

Authors:  Adam Muschielok; Joanna Andrecka; Anass Jawhari; Florian Brückner; Patrick Cramer; Jens Michaelis
Journal:  Nat Methods       Date:  2008-10-12       Impact factor: 28.547

10.  Mapping the structure and conformational movements of proteins with transition metal ion FRET.

Authors:  Justin W Taraska; Michael C Puljung; Nelson B Olivier; Galen E Flynn; William N Zagotta
Journal:  Nat Methods       Date:  2009-06-14       Impact factor: 28.547

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  8 in total

Review 1.  Milestones in the development and implementation of FRET-based sensors of intracellular signals: A biological perspective of the history of FRET.

Authors:  J Deal; D J Pleshinger; S C Johnson; S J Leavesley; T C Rich
Journal:  Cell Signal       Date:  2020-09-06       Impact factor: 4.315

2.  Accurate high-throughput structure mapping and prediction with transition metal ion FRET.

Authors:  Xiaozhen Yu; Xiongwu Wu; Guillermo A Bermejo; Bernard R Brooks; Justin W Taraska
Journal:  Structure       Date:  2012-12-27       Impact factor: 5.006

3.  Quantitative analysis of molecular transport across liposomal bilayer by J-mediated 13C Overhauser dynamic nuclear polarization.

Authors:  Chi-Yuan Cheng; Olga J G M Goor; Songi Han
Journal:  Anal Chem       Date:  2012-10-23       Impact factor: 6.986

4.  Thioamide quenching of fluorescent probes through photoinduced electron transfer: mechanistic studies and applications.

Authors:  Jacob M Goldberg; Solongo Batjargal; Benson S Chen; E James Petersson
Journal:  J Am Chem Soc       Date:  2013-11-22       Impact factor: 15.419

5.  Distance mapping in proteins using fluorescence spectroscopy: tyrosine, like tryptophan, quenches bimane fluorescence in a distance-dependent manner.

Authors:  Amber M Jones Brunette; David L Farrens
Journal:  Biochemistry       Date:  2014-10-01       Impact factor: 3.162

Review 6.  Site-Directed Fluorescence Approaches for Dynamic Structural Biology of Membrane Peptides and Proteins.

Authors:  H Raghuraman; Satyaki Chatterjee; Anindita Das
Journal:  Front Mol Biosci       Date:  2019-09-25

7.  Ultrasensitive Detection of COVID-19 Causative Virus (SARS-CoV-2) Spike Protein Using Laser Induced Graphene Field-Effect Transistor.

Authors:  Tian-Rui Cui; Yan-Cong Qiao; Jian-Wei Gao; Chun-Hua Wang; Yu Zhang; Lin Han; Yi Yang; Tian-Ling Ren
Journal:  Molecules       Date:  2021-11-17       Impact factor: 4.411

8.  Exploring structural dynamics of a membrane protein by combining bioorthogonal chemistry and cysteine mutagenesis.

Authors:  Kanchan Gupta; Gilman Es Toombes; Kenton J Swartz
Journal:  Elife       Date:  2019-11-12       Impact factor: 8.140

  8 in total

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