Literature DB >> 22444835

Undecided membrane proteins insert in random topologies. Up, down and sideways: it does not really matter.

Shimon Schuldiner1.   

Abstract

It is usually assumed that to ensure proper function, membrane proteins must be inserted in a unique topology. However, a number of dimeric small multidrug transporters can function in the membrane in various topologies. Thus, the dimers can be a random mixture of NiCi (N and C termini facing the cell cytoplasm) and NoCo (N and C termini facing the outside) orientation. In addition, the dimer functions whether the two protomers are parallel (N and C termini of both protomers on the same side of the membrane) or antiparallel (N and C termini of each protomer on opposite sides of the membrane). This unique phenomenon provides strong support for a simple mechanism of transport where the directionality is determined solely by the driving force.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22444835      PMCID: PMC3372635          DOI: 10.1016/j.tibs.2012.02.006

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  26 in total

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Authors:  Iban Ubarretxena-Belandia; Joyce M Baldwin; Shimon Schuldiner; Christopher G Tate
Journal:  EMBO J       Date:  2003-12-01       Impact factor: 11.598

2.  The membrane topology of EmrE - a small multidrug transporter from Escherichia coli.

Authors:  Shira Ninio; Yael Elbaz; Shimon Schuldiner
Journal:  FEBS Lett       Date:  2004-03-26       Impact factor: 4.124

3.  X-ray structure of the EmrE multidrug transporter in complex with a substrate.

Authors:  Owen Pornillos; Yen-Ju Chen; Andy P Chen; Geoffrey Chang
Journal:  Science       Date:  2005-12-23       Impact factor: 47.728

4.  Identification and evolution of dual-topology membrane proteins.

Authors:  Mikaela Rapp; Erik Granseth; Susanna Seppälä; Gunnar von Heijne
Journal:  Nat Struct Mol Biol       Date:  2006-01-22       Impact factor: 15.369

5.  Two-component bacterial multidrug transporter, EbrAB: Mutations making each component solely functional.

Authors:  Takashi Kikukawa; Toshifumi Nara; Tsunehisa Araiso; Seiji Miyauchi; Naoki Kamo
Journal:  Biochim Biophys Acta       Date:  2006-04-21

6.  Quasi-symmetry in the cryo-EM structure of EmrE provides the key to modeling its transmembrane domain.

Authors:  Sarel J Fleishman; Susan E Harrington; Angela Enosh; Dan Halperin; Christopher G Tate; Nir Ben-Tal
Journal:  J Mol Biol       Date:  2006-08-30       Impact factor: 5.469

7.  Functional analysis of novel multidrug transporters from human pathogens.

Authors:  S Ninio; D Rotem; S Schuldiner
Journal:  J Biol Chem       Date:  2001-09-26       Impact factor: 5.157

8.  Lactose permease and the alternating access mechanism.

Authors:  Irina Smirnova; Vladimir Kasho; H Ronald Kaback
Journal:  Biochemistry       Date:  2011-10-19       Impact factor: 3.162

9.  Crosslinking of membrane-embedded cysteines reveals contact points in the EmrE oligomer.

Authors:  Misha Soskine; Sonia Steiner-Mordoch; Shimon Schuldiner
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-09       Impact factor: 11.205

10.  Antiparallel EmrE exports drugs by exchanging between asymmetric structures.

Authors:  Emma A Morrison; Gregory T DeKoster; Supratik Dutta; Reza Vafabakhsh; Michael W Clarkson; Arjun Bahl; Dorothee Kern; Taekjip Ha; Katherine A Henzler-Wildman
Journal:  Nature       Date:  2011-12-18       Impact factor: 49.962

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  14 in total

Review 1.  The challenge of efflux-mediated antibiotic resistance in Gram-negative bacteria.

Authors:  Xian-Zhi Li; Patrick Plésiat; Hiroshi Nikaido
Journal:  Clin Microbiol Rev       Date:  2015-04       Impact factor: 26.132

2.  Stable membrane orientations of small dual-topology membrane proteins.

Authors:  Nir Fluman; Victor Tobiasson; Gunnar von Heijne
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-11       Impact factor: 11.205

3.  Role of protons in sugar binding to LacY.

Authors:  Irina Smirnova; Vladimir Kasho; Junichi Sugihara; José Luis Vázquez-Ibar; H Ronald Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-02       Impact factor: 11.205

4.  Metabolism of Free Guanidine in Bacteria Is Regulated by a Widespread Riboswitch Class.

Authors:  James W Nelson; Ruben M Atilho; Madeline E Sherlock; Randy B Stockbridge; Ronald R Breaker
Journal:  Mol Cell       Date:  2016-12-15       Impact factor: 17.970

5.  Structure, Assembly, and Function of Tripartite Efflux and Type 1 Secretion Systems in Gram-Negative Bacteria.

Authors:  Ilyas Alav; Jessica Kobylka; Miriam S Kuth; Klaas M Pos; Martin Picard; Jessica M A Blair; Vassiliy N Bavro
Journal:  Chem Rev       Date:  2021-04-28       Impact factor: 60.622

6.  Transforming a drug/H+ antiporter into a polyamine importer by a single mutation.

Authors:  Shlomo Brill; Ofir Sade Falk; Shimon Schuldiner
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-03       Impact factor: 11.205

7.  Effects of mixed proximal and distal topogenic signals on the topological sensitivity of a membrane protein to the lipid environment.

Authors:  Heidi Vitrac; William Dowhan; Mikhail Bogdanov
Journal:  Biochim Biophys Acta Biomembr       Date:  2017-04-19       Impact factor: 3.747

8.  Lipid-dependent generation of dual topology for a membrane protein.

Authors:  Mikhail Bogdanov; William Dowhan
Journal:  J Biol Chem       Date:  2012-09-10       Impact factor: 5.157

9.  Ligand-induced conformational changes of the multidrug resistance transporter EmrE probed by oriented solid-state NMR spectroscopy.

Authors:  Anindita Gayen; James R Banigan; Nathaniel J Traaseth
Journal:  Angew Chem Int Ed Engl       Date:  2013-08-12       Impact factor: 15.336

10.  Antiparallel dimers of the small multidrug resistance protein EmrE are more stable than parallel dimers.

Authors:  Pilar Lloris-Garcerá; Frans Bianchi; Joanna S G Slusky; Susanna Seppälä; Daniel O Daley; Gunnar von Heijne
Journal:  J Biol Chem       Date:  2012-06-14       Impact factor: 5.157

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