| Literature DB >> 22435466 |
Yun Lee1, Suren R Sooranna, Vasso Terzidou, Mark Christian, Jan Brosens, Kaisa Huhtinen, Matti Poutanen, Geraint Barton, Mark R Johnson, Phillip R Bennett.
Abstract
The absence of a fall in circulating progesterone levels has led to the concept that human labour is associated with 'functional progesterone withdrawal' caused through changes in the expression or function of progesterone receptor (PR). At the time of labour, the human uterus is heavily infiltrated with inflammatory cells, which release cytokines to create a 'myometrial inflammation' via NF-κB activation. The negative interaction between NF-κB and PR, may represent a mechanism to account for 'functional progesterone withdrawal' at term. Conversely, PR may act to inhibit NF-κB function and so play a role in inhibition of myometrial inflammation during pregnancy. To model this inter-relationship, we have used small interfering (si) RNA-mediated knock-down of PR in human pregnant myocytes and whole genome microarray analysis to identify genes regulated through PR. We then activated myometrial inflammation using IL-1β stimulation to determine the role of PR in myometrial inflammation regulation. Through PR-knock-down, we found that PR regulates gene networks involved in myometrial quiescence and extracellular matrix integrity. Activation of myometrial inflammation was found to antagonize PR-induced gene expression, of genes normally upregulated via PR. We found that PR does not play a role in repression of pro-inflammatory gene networks induced by IL-1β and that only MMP10 was significantly regulated in opposite directions by IL-1β and PR. We conclude that progesterone acting through PR does not generally inhibit myometrial inflammation. Activation of myometrial inflammation does cause 'functional progesterone withdrawal' but only in the context of genes normally upregulated via PR.Entities:
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Year: 2012 PMID: 22435466 PMCID: PMC3823442 DOI: 10.1111/j.1582-4934.2012.01567.x
Source DB: PubMed Journal: J Cell Mol Med ISSN: 1582-1838 Impact factor: 5.310
Fig 1(A) Expression of oxytocin receptor (OTR), alpha-smooth muscle actin (aSMA) and glyceraldehyde 3-phosphate dehydrogenase (GAPDH) at passage numbers zero through four. (B) Expression of PRB and PRA measured by Western analysis in cultured human myocytes in non-transfected (control), non-targeting siRNA transfected (NT) and PR targeting siRNA transfected (siPR) cells. Blots were scanned for densitometric analysis, values were normalized for GAPDH and are expressed as arbitrary units. One example blot is shown. Graphs n = 6 ± S.E., *P < 0.05 compared with control. (C) Expression of PRB and PRA and of Ser536-P-p65 (NF-kappaB p65) measured by Western analysis in cultured human myocytes in controls incubated with MPA (100 nM) (control) and following incubation with MPA (100 nM) and IL1B (1 ng/ml) for up to 24 hrs. Blots were scanned for densitometric analysis, values were normalized for GAPDH and are expressed as arbitrary units. One example blot is shown. Graphs n = 4 ± S.E. *P < 0.05 compared with control. (D) Validation experiments measuring expression of selected genes in myocytes in culture following siRNA knock-down of PR (siPR N/S), incubation with and without IL1B (1 ng/ml) (NT + IL1B), or both together (siPR + IL1B), compared with non-targeting siRNA transfected (NT) control. Black bars show qRT-PCR validation data (n = 4 ± S.E. *P < 0.05 compared with control). Grey bars show data from microarray for comparison.
Sequences for PCR primers used in quantitative RT-PCR validation studies
| Gene symbol | Forward primer (5′–3′) | Reverse primer (5′–3′) |
|---|---|---|
| MMP1 | CAGAGGGAGCTTCCTAGCTG | AGCTGTGCATACTGGCCTTT |
| MMP3 | CACTCACAGACCTGACTCGG | AGTCAGGGGGAGGTCCATAG |
| MMP10 | CAAAATCTGTTCCTTCGGGA | TCTCCCCTCAGAGTGCTGAT |
| COLEC12 | CAGCCAGCTCAACTCATTCA | GGTCTTTCAGGTTCTGCTCG |
| STMN2 | AAGAAAGTCTCAGGAGGCCC | TGTTGTTCTCCTCCAAAGCC |
| SCARA3 | AGGAGAGGGCAGAGGAAGAC | TGCCCAGAGACAGATGTGAG |
| THBS1F | ACCAAAGCCTGCAAGAAAGA | TCTGTACCCCTCCTCCACAG |
| KCNJ2 | CGCTTTTTACAAACCACTGGA | AACATGTCCTGTTGCTGGC |
| COL12A1 | TGGAAAATCCCAGGATGAAG | CAGCTTTAATGCCCAAGGAG |
| RXFP1 | TCACCTCAGTCGAATTTCCC | TCAGGTAAACGGGTGAGGAC |
| TRPC6 | AGAAGTCGAGGCCATTCTGA | GAACTTGACCGCCATTGTCT |
| PR | AGCCCACAATACAGCTTCGAG | TTTCGACCTCCAAGGACCAT |
| GAPDH | TGATGACATCAAGAAGGTGGTGAAG | TCCTTGGAGGCCATGTAGGCCAT |
Unique genes whose expression was decreased by PR-knock-down, and whose expression is therefore upregulated by PR in the presence of progesterone. 44 genes showed changes in expression of 2-fold or more. 11 genes showed changes in expression of 3-fold or more. In each case n = 4, P < 0.0005, Adjusted P < 0.05)
| ID | Gene symbol | Gene title | Fold change in expression |
|---|---|---|---|
| 222853_at | FLRT3 | Fibronectin leucine-rich transmembrane protein 3 | −5.419 |
| 217287_s_at | TRPC6 | Transient receptor potential cation channel C6 | −5.406 |
| 202708_s_at | HIST2H2BE | Histone cluster 2, H2be | −4.98 |
| 223877_at | C1QTNF7 | C1q and tumour necrosis factor related protein 7 | −4.545 |
| 1559114_a_at | CXCR7 | CXC chemokine receptor type 7 | −4.348 |
| 206765_at | KCNJ2 | Potassium inwardly rectifying channel, subfamily J, member 2 | −4.138 |
| 239710_at | FIGN | Fidgetin | −4.069 |
| 201107_s_at | THBS1 | Thrombospondin 1 | −3.921 |
| 235371_at | GLT8D4 | Glycosyltransferase 8 domain containing 4 | −3.448 |
| 231186_at | FLJ43390 | Hypothetical LOC646113 | −3.196 |
| 202016_at | MEST | Mesoderm specific transcript homologue | −3.153 |
| 233109_at | COL12A1 | Collagen type XII alpha-1 precursor | −2.869 |
| 226610_at | CENPV | Centromere protein V | −2.781 |
| 204837_at | MTMR9 | Myotubularin related protein 9 | −2.748 |
| 225008_at | ASPH | Aspartyl(asparaginyl)beta-hydroxylase | −2.612 |
| 201487_at | CTSC | Cathepsin C | −2.411 |
| 238447_at | RBMS3 | RNA binding motif, single stranded interacting protein | −2.41 |
| 222771_s_at | MYEF2 | Myelin expression factor 2 | −2.402 |
| 211959_at | IGFBP5 | Insulin-like growth factor binding protein 5 | −2.384 |
| 220153_at | ENTPD7 | Ectonucleoside triphosphate diphosphohydrolase 7 | −2.383 |
| 224613_s_at | DNAJC5 | DnaJ (Hsp40) homologue, subfamily C, member 5 | −2.369 |
| 208903_at | RPS28 | Ribosomal protein S28 | −2.367 |
| 224767_at | RPL37 | Ribosomal protein L37, mRNA | −2.357 |
| 205807_s_at | TUFT1 | Tuftelin 1 | −2.342 |
| 224984_at | NFAT5 | Nuclear factor of activated T-cells 5, tonicity-responsive | −2.335 |
| 222582_at | PRKAG2 | Protein kinase, AMP-activated, gamma 2 non-catalytic subunit | −2.314 |
| 223155_at | HDHD2 | Haloacid dehalogenase-like hydrolase domain containing 2 | −2.311 |
| 202091_at | ARL2BP | ADP-ribosylation factor-like 2 binding protein | −2.284 |
| 213223_at | RPL28 | Ribosomal protein L28 | −2.236 |
| 213024_at | TMF1 | TATA element modulatory factor 1 | −2.217 |
| 205012_s_at | HAGH | Hydroxyacylglutathione hydrolase | −2.196 |
| 1554489_a_at | CEP70 | Centrosomal protein 70 kD | −2.17 |
| 218888_s_at | NETO2 | Neuropilin (NRP) and tolloid (TLL)-like 2 | −2.163 |
| 229456_s_at | DDAH1 | Dimethylarginine dimethylaminohydrolase 1 (DDAH1) V2 | −2.154 |
| 203854_at | CFI | Complement factor I | −2.128 |
| 204042_at | WASF3 | WAS protein family, member 3 | −2.122 |
| 215506_s_at | DIRAS3 | DIRAS family, GTP-binding RAS-like 3 | −2.116 |
| 201285_at | MKRN1 | Makorin ring finger protein 1 | −2.093 |
| 212875_s_at | C2CD2 | C2 calcium-dependent domain containing 2 | −2.084 |
| 224727_at | C19orf63 | Chromosome 19 open reading frame 63 | −2.082 |
| 209066_x_at | UQCRB | Ubiquinol-cytochrome c reductase binding protein | −2.027 |
| 224559_at | MALAT1 | Metastasis associated lung adenocarcinoma transcript 1 | −2.01 |
| 205381_at | LRRC17 | leucine rich repeat containing 17 | −2.008 |
| 205755_at | ITIH3 | Inter-alpha (globulin) inhibitor H3 | −2.003 |
Unique genes whose expression was increased by PR-knock-down, and whose expression is therefore inhibited by liganded-PR. 24 genes showed changes in expression of 3-fold or more. 55 genes showed changes in expression of 2 to 3-fold. (In each case n = 4, P < 0.0005, Adjusted P < 0.05)
| ID | Gene symbol | Gene title | Fold change in expression |
|---|---|---|---|
| 205680_at | MMP10 | Matrix metallopeptidase 10 (stromelysin 2) | 7.617 |
| 215867_x_at | CA12 | Carbonic anhydrase XII | 7.571 |
| 223843_at | SCARA3 | Scavenger receptor class A, member 3 | 6.989 |
| 214799_at | NFASC | Neurofascin homologue (chicken) | 6.311 |
| 228155_at | C10orf57 58 | Chromosome 10 open reading frame 57 and 58 | 5.803 |
| 203001_s_at | STMN2 | Stathmin-like 2 | 5.511 |
| 244353_s_at | SLC2A12 | Solute carrier family 2 (facilitated glucose transporter), member 12 | 5.277 |
| 221019_s_at | COLEC12 | Collectin sub-family member 12 | 5.205 |
| 214844_s_at | DOK5 | Docking protein 5 | 4.276 |
| 204638_at | ACP5 | Acid phosphatase 5, tartrate resistant | 4.16 |
| 207016_s_at | ALDH1A2 | Aldehyde dehydrogenase 1 family, member A2 | 3.915 |
| 217525_at | OLFML1 | Olfactomedin-like 1 | 3.669 |
| 220351_at | CCRL1 | Chemokine (C-C motif) receptor-like 1 | 3.633 |
| 213415_at | CLIC2 | Chloride intracellular channel 2 | 2.95 |
| 202580_x_at | FOXM1 | Forkhead box M1 | 2.929 |
| 209159_s_at | NDRG4 | NDRG family member 4 | 2.862 |
| 213001_at | ANGPTL2 | Angiopoietin-like 2 | 2.841 |
| 243956_at | SUSD3 | MRNA; cDNA DKFZp434J1812 | 2.787 |
| 235198_at | OSTM1 | Osteopetrosis associated transmembrane protein 1 | 2.768 |
| 205347_s_at | MGC39900 | Thymosin beta15b///thymosin beta 15a | 2.705 |
| 220911_s_at | KIAA1305 | KIAA1305 | 2.613 |
| 228890_at | ATOH8 | Atonal homologue 8 (Drosophila) | 2.585 |
| 228436_at | KCNC4 | Potassium voltage-gated channel, Shaw 4 | 2.578 |
| 219937_at | TRHDE | Thyrotropin-releasing hormone degrading enzyme | 2.578 |
| 1558537_x_at | ZNF844 | Zinc finger protein 844 | 2.564 |
| 1569157_s_at | ZNF846 | Zinc finger protein 846 | 2.564 |
| 218211_s_at | MLPH | Melanophilin | 2.555 |
| 226145_s_at | FRAS1 | Fraser syndrome 1 | 2.513 |
| 209539_at | ARHGEF6 | Rac/Cdc42 guanine nucleotide exchange factor 6 | 2.504 |
| 213836_s_at | WIPI1 | WD repeat domain, phosphoinositide interacting 1 | 2.462 |
| 205730_s_at | ABLIM3 | Actin binding LIM protein family, member 3 | 2.446 |
| 209197_at | SYT11 | Synaptotagmin XI | 2.444 |
| 1552651_a_at | RFFL | Ring finger and FYVE-like domain containing 1 | 2.423 |
| 235746_s_at | PLA2R1 | Phospholipase A2 receptor 1, 180 kD | 2.414 |
| 241723_at | IQGAP2 | IQ motif containing GTPase activating protein 2 | 2.412 |
| 216603_at | SLC7A8 | Solute carrier family 7 (cationic amino acid transporter, y+ system), 8 | 2.407 |
| 210768_x_at | TMCO1 | Transmembrane and coiled-coil domains 1 | 2.398 |
| 227048_at | LAMA1 | Laminin, alpha 1 | 2.394 |
| 204236_at | FLI1 | Friend leukaemia virus integration 1 | 2.393 |
| 1563753_at | LOC149684 | Hypothetical protein LOC149684 | 2.372 |
| 205113_at | NEFM | Neurofilament, medium polypeptide | 2.37 |
| 204675_at | SRD5A1 | Steroid-5-alpha-reductase, alpha polypeptide 1 | 2.368 |
| 209365_s_at | ECM1 | Extracellular matrix protein 1 | 2.364 |
| 211343_s_at | COL13A1 | Collagen, type XIII, alpha 1 | 2.351 |
| 204797_s_at | EML1 | Echinoderm microtubule associated protein like 1 | 2.34 |
| 224800_at | WDFY1 | WD repeat and FYVE domain containing 1 | 2.327 |
| 228438_at | LOC100132891 | Homo sapiens hypothetical protein LOC100132891 | 2.309 |
| 203435_s_at | MME | Membrane metallo-endopeptidase | 2.302 |
| 210291_s_at | ZNF174 | Zinc finger protein 174 | 2.29 |
| 232636_at | SLITRK4 | SLIT and NTRK-like family, member 4 | 2.252 |
| 207463_x_at | PRSS3 | Protease, serine, 3 | 2.251 |
| 213562_s_at | SQLE | Squalene epoxidase | 2.248 |
| 228728_at | C7orf58 | Chromosome 7 open reading frame 58 | 2.241 |
| 225412_at | TMEM87B | Transmembrane protein 87B | 2.227 |
| 226106_at | RNF141 | Ring finger protein 141 | 2.201 |
| 208703_s_at | APLP2 | Amyloid beta (A4) precursor-like protein 2 | 2.197 |
| 223395_at | ABI3BP | ABI family, member 3 (NESH) binding protein | 2.191 |
| 244881_at | LMLN | Leishmanolysin-like (metallopeptidase M8 family) | 2.18 |
| 213309_at | PLCL2 | Phospholipase C-like 2 | 2.18 |
| 205603_s_at | DIAPH2 | Diaphanous homologue 2 (Drosophila) | 2.164 |
| 203666_at | CXCL12 | Chemokine (C-X-C motif) ligand 12 | 2.137 |
| 227188_at | C21orf63 | Chromosome 21 open reading frame 63 | 2.084 |
| 228253_at | LOXL3 | Lysyl oxidase-like 3 | 2.083 |
| 213725_x_at | XYLT1 | Xylosyltransferase I | 2.053 |
| 230256_at | C1orf104 | Chromosome 1 open reading frame 104, mRNA | 2.047 |
| 1558680_s_at | PDE1A | Phosphodiesterase 1A, calmodulin-dependent | 2.021 |
| 205205_at | RELB | v-rel reticuloendotheliosis viral oncogene homologue B | 2.009 |
| 212573_at | ENDOD1 | Endonuclease domain containing 1 | 2.002 |
Unique genes whose expression was increased 20-fold or more by interleukin 1-beta. (In each case n = 4, P < 0.0005, Adjusted P < 0.05)
| ID | Gene symbol | Gene title | Fold change in expression |
|---|---|---|---|
| 209774_x_at | CXCL2 | Chemokine (C-X-C motif) ligand 2 | 1504.177 |
| 207850_at | CXCL3 | Chemokine (C-X-C motif) ligand 3 | 1008.501 |
| 205476_at | CCL20 | Chemokine (C-C motif) ligand 20 | 491.925 |
| 211506_s_at | IL8 | Interleukin 8 | 474.416 |
| 204470_at | CXCL1 | Chemokine (C-X-C motif) ligand 1 | 465.483 |
| 204533_at | CXCL10 | Chemokine (C-X-C motif) ligand 10 | 417.043 |
| 202638_s_at | ICAM1 | Intercellular adhesion molecule 1 | 362.152 |
| 223484_at | C15orf48 | Chromosome 15 open reading frame 48 | 311.712 |
| 202510_s_at | TNFAIP2 | Tumour necrosis factor, alpha-induced protein 2 | 278.746 |
| 205207_at | IL6 | Interleukin 6 (interferon, beta 2) | 205.52 |
| 214974_x_at | CXCL5 | Chemokine (C-X-C motif) ligand 5 | 197.62 |
| 202643_s_at | TNFAIP3 | Tumour necrosis factor, alpha-induced protein 3 | 172.438 |
| 208075_s_at | CCL7 | Chemokine (C-C motif) ligand 7 | 170.853 |
| 203868_s_at | VCAM1 | Vascular cell adhesion molecule 1 | 144.993 |
| 205067_at | IL1B | Interleukin 1, beta | 144.646 |
| 204748_at | PTGS2 | Prostaglandin-endoperoxide synthase 2 | 103.175 |
| 206336_at | CXCL6 | Chemokine (C-X-C motif) ligand 6 | 95.875 |
| 216598_s_at | CCL2 | Chemokine (C-C motif) ligand 2 | 93.106 |
| 225516_at | SLC7A2 | Solute carrier family 7, member 2 | 82.812 |
| 207442_at | CSF3 | Colony stimulating factor 3 (granulocyte) | 77.819 |
| 210538_s_at | BIRC3 | Baculoviral IAP repeat-containing 3 | 73.068 |
| 205681_at | BCL2A1 | BCL2-related protein A1 | 72.539 |
| 204798_at | MYB | v-myb myeloblastosis viral oncogene homologue (avian) | 64.656 |
| 204614_at | SERPINB2 | Serpin peptidase inhibitor, clade B, member 2 | 53.144 |
| 209706_at | NKX3-1 | NK3 homeobox 1 | 51.161 |
| 205680_at | MMP10 | Matrix metallopeptidase 10 (stromelysin 2) | 48.891 |
| 214038_at | CCL8 | Chemokine (C-C motif) ligand 8 | 48.42 |
| 217590_s_at | TRPA1 | Transient receptor potential cation channel, subfamily A, member 1 | 47.185 |
| 215223_s_at | SOD2 | Superoxide dismutase 2, mitochondrial | 46.044 |
| 222549_at | CLDN1 | Claudin 1 | 44.584 |
| 205266_at | LIF | Leukaemia inhibitory factor | 41.476 |
| 220091_at | SLC2A6 | Solute carrier family 2, member 6 | 40.655 |
| 205027_s_at | MAP3K8 | Mitogen-activated protein kkk 8 | 36.936 |
| 205013_s_at | ADORA2A | Adenosine A2a receptor | 36.636 |
| 213524_s_at | G0S2 | G0/G1switch 2 | 36.454 |
| 229437_at | BIC | BIC transcript | 36.36 |
| 209493_at | PDZD2 | PDZ domain containing 2 | 35.692 |
| 202357_s_at | C2///CFB | Complement component 2 factor B | 35.285 |
| 823_at | CX3CL1 | Chemokine (C-X3-C motif) ligand 1 | 35.275 |
| 204224_s_at | GCH1 | GTP cyclohydrolase 1 | 34.613 |
| 204273_at | EDNRB | Endothelin receptor type B | 34.355 |
| 207386_at | CYP7B1 | Cytochrome P450, 7B1 | 34.197 |
| 210133_at | CCL11 | Chemokine (C-C motif) ligand 11 | 32.614 |
| 231779_at | IRAK2 | Interleukin-1 receptor-associated kinase 2 | 31.006 |
| 235122_at | HIVEP3 | HIV type I enhancer binding protein 3 | 28.811 |
| 1555759_a_at | CCL5 | Chemokine (C-C motif) ligand 5 | 28.427 |
| 228186_s_at | RSPO3 | R-spondin 3 homologue (Xenopus laevis) | 27.918 |
| 218810_at | ZC3H12A | Zinc finger CCCH-type containing 12A | 26.17 |
| 203180_at | ALDH1A3 | Aldehyde dehydrogenase 1 A3 | 25.876 |
| 207510_at | BDKRB1 | Bradykinin receptor B1 | 23.079 |
| 225316_at | MFSD2 | Major facilitator superfamily domain 2 | 22.964 |
| 206924_at | IL11 | Interleukin 11 | 22.963 |
| 205798_at | IL7R | Interleukin 7 receptor | 22.495 |
| 205619_s_at | MEOX1 | Mesenchyme homeobox 1 | 21.495 |
| 202902_s_at | CTSS | Cathepsin S | 20.715 |
| 206432_at | HAS2 | Hyaluronan synthase 2 | 20.527 |
Unique genes whose expression was decreased 5-fold or more by interleukin 1-beta. (In each case n = 4, P < 0.0005, Adjusted P < 0.05)
| ID | Gene symbol | Gene title | Fold change in expression |
|---|---|---|---|
| 201009_s_at | TXNIP | Thioredoxin interacting protein | −26.955 |
| 226069_at | PRICKLE1 | Prickle homologue 1 (Drosophila) | −11.959 |
| 238029_s_at | SLC16A14 | Solute carrier family 16, member 14 | −11.46 |
| 209582_s_at | CD200 | CD200 molecule | −10.727 |
| 204424_s_at | LMO3 | LIM domain only 3 (rhombotin-like 2) | −10.248 |
| 225171_at | ARHGAP18 | Rho GTPase activating protein 18 | −10.094 |
| 221911_at | ETV1 | Ets variant 1 | −9.948 |
| 220002_at | KIF26B | Kinesin family member 26B | −9.665 |
| 239710_at | FIGN | Fidgetin | −9.57 |
| 225548_at | SHROOM3 | Shroom family member 3 | −9.142 |
| 235085_at | PRAGMIN | Homologue of rat pragma of Rnd2 | −8.716 |
| 229674_at | SERTAD4 | SERTA domain containing 4 | −8.512 |
| 206528_at | TRPC6 | Transient receptor potential cation channel, C6 | −8.502 |
| 227812_at | TNFRSF19 | Tumour necrosis factor receptor superfamily, 19 | −8.113 |
| 226492_at | SEMA6D | Sema domain, transmembrane domain (TM), and cytoplasmic domain, 6D | −7.632 |
| 206448_at | ZNF365 | Zinc finger protein 365 | −7.578 |
| 233533_at | KRTAP1-5 | Keratin associated protein 1-5 | −7.45 |
| 235591_at | SSTR1 | Somatostatin receptor 1 | −7.312 |
| 1552508_at | KCNE4 | Potassium voltage-gated channel, Isk- 4 | −7.278 |
| 219935_at | ADAMTS5 | ADAM metallopeptidase with thrombospondin type 1 motif, 5 | −7.264 |
| 242396_at | LOC100132798 | Full length insert cDNA clone ZD42A11 | −6.852 |
| 225977_at | PCDH18 | Protocadherin 18 | −6.798 |
| 229092_at | NR2F2 | Nuclear receptor subfamily 2, group F, member 2 | −6.79 |
| 222853_at | FLRT3 | Fibronectin leucine rich transmembrane protein 3 | −6.775 |
| 229114_at | GAB1 | GRB2-associated binding protein 1 | −6.536 |
| 235956_at | KIAA1377 | KIAA1377 | −6.523 |
| 235476_at | TRIM59 | Tripartite motif-containing 59 | −6.494 |
| 209292_at | ID4 | Id-related helix-loop-helix protein Id4 | −6.343 |
| 241752_at | SLC8A1 | Solute carrier family 8, member 1 | −6.338 |
| 218087_s_at | SORBS1 | Sorbin and SH3 domain containing 1 | −6.157 |
| 207233_s_at | MITF | Microphthalmia-associated transcription factor | −6.111 |
| 242794_at | MAML3 | Mastermind-like 3 (Drosophila) | −6.049 |
| 225816_at | PHF17 | PHD finger protein 17 | −5.908 |
| 243140_at | ACTA2 | Actin, alpha 2, smooth muscle, aorta, transcript variant 1 | −5.816 |
| 231881_at | CALD1 | Caldesmon 1 | −5.794 |
| 219619_at | DIRAS2 | DIRAS family, GTP-binding RAS-like 2 | −5.739 |
| 228821_at | ST6GAL2 | ST6 beta-galactosamide alpha-2,6-sialyltranferase 2 | −5.678 |
| 226677_at | ZNF521 | Zinc finger protein 521 | −5.61 |
| 222662_at | PPP1R3B | Protein phosphatase 1, regulatory (inhibitor) subunit 3B | −5.588 |
| 209815_at | PTCH1 | Patched homologue 1 (Drosophila) | −5.508 |
| 204338_s_at | RGS4 | Regulator of G-protein signalling 4 | −5.377 |
| 203373_at | SOCS2 | Suppressor of cytokine signalling 2 | −5.312 |
| 205304_s_at | KCNJ8 | Potassium inwardlyrectifying channel, J8 | −5.28 |
| 209829_at | FAM65B | Family with sequence similarity 65, member B | −5.164 |
| 204529_s_at | TOX | Thymocyte selection-associated high mobility group box | −5.051 |
| 223599_at | TRIM6 | Tripartite motif-containing 6 | −5.042 |
Fig 2(A) Correlation between the effect of incubation with IL1b and siRNA PR-knock-down upon all 276 genes whose expression was found to be regulated by PR (r = 0.4288, P < 0.0001). (B) Correlation between the effect of incubation with IL1b and siRNA PR-knock-down upon the 118 genes whose expression was found to be decreased by PR-knock-down (r = 0.44, P < 0.0001). Heatmaps compare effect of IL1b and siRNA PR-knock-down organized by (left panel) descending effect of siRNA PR-knock-down and (right panel) into gene groups similarly and oppositely regulated by IL1b and siRNA PR-knock-down. (C) Correlation between the effect of incubation with IL1b and siRNA PR-knock-down upon the 158 genes whose expression was found to be increased by PR-knock-down. Dotted line shows correlation if MMP10 is omitted from analysis. Heatmap compares effect of IL1b and siRNA PR-knock-down organized by descending effect of siRNA PR-knock-down. (D) Correlation between the effect of incubation with IL1b and siRNA PR-knock-down upon the 1440 genes whose expression was found to be increased by IL1b. (E) Correlation between the effect of incubation with IL1b and siRNA PR-knock-down in the presence of IL1b upon the 1440 genes whose expression was found to be increased by IL1b.
Unique IL1b upregulated genes whose expression was increased in unstimulated cells by PR-knock-down (siRNA/PR FC i.e fold change), and further increased by PR-knock-down in the presence of IL1b (siRNA/PR + IL1b FC i.e fold change). (In each case n = 4, P < 0.0005, Adjusted P < 0.05)
| ID | Gene Symbol | Gene name | Fold increase IL1β | Fold increase siPR | Fold increase siPR + IL1β v IL1β alone |
|---|---|---|---|---|---|
| 205680_at | MMP10 | Matrix metallopeptidase 10 | 48.9 | 7.6 | 8 |
| 204475_at | MMP1 | Matrix metallopeptidase 1 | 16 | 5.8 | 6.4 |
| 218330_s_at | NAV2 | Neuron navigator 2 | 2.2 | 3.4 | 2.5 |
| 209960_at | HGF | Hepatocyte growth factor | 6.2 | 2.6 | 2.8 |
| 213562_s_at | SQLE | Squalene epoxidase | 2.7 | 2.2 | 1.8 |
| 223395_at | ABI3BP | ABI family, 3 (NESH) binding protein | 1.6 | 2.2 | 2.3 |
| 213725_x_at | XYLT1 | Xylosyltransferase I | 1.6 | 2.1 | 1.9 |
Significant for single but not multiple testing.