Literature DB >> 22428594

Fisher and Shannon information in finite neural populations.

Stuart Yarrow1, Edward Challis, Peggy Seriès.   

Abstract

The precision of the neural code is commonly investigated using two families of statistical measures: Shannon mutual information and derived quantities when investigating very small populations of neurons and Fisher information when studying large populations. These statistical tools are no longer the preserve of theorists and are being applied by experimental research groups in the analysis of empirical data. Although the relationship between information-theoretic and Fisher-based measures in the limit of infinite populations is relatively well understood, how these measures compare in finite-size populations has not yet been systematically explored. We aim to close this gap. We are particularly interested in understanding which stimuli are best encoded by a given neuron within a population and how this depends on the chosen measure. We use a novel Monte Carlo approach to compute a stimulus-specific decomposition of the mutual information (the SSI) for populations of up to 256 neurons and show that Fisher information can be used to accurately estimate both mutual information and SSI for populations of the order of 100 neurons, even in the presence of biologically realistic variability, noise correlations, and experimentally relevant integration times. According to both measures, the stimuli that are best encoded are those falling at the flanks of the neuron's tuning curve. In populations of fewer than around 50 neurons, however, Fisher information can be misleading.

Mesh:

Year:  2012        PMID: 22428594     DOI: 10.1162/NECO_a_00292

Source DB:  PubMed          Journal:  Neural Comput        ISSN: 0899-7667            Impact factor:   2.026


  11 in total

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Journal:  Elife       Date:  2022-08-04       Impact factor: 8.713

4.  Detecting and quantifying topography in neural maps.

Authors:  Stuart Yarrow; Khaleel A Razak; Aaron R Seitz; Peggy Seriès
Journal:  PLoS One       Date:  2014-02-05       Impact factor: 3.240

5.  The role of thalamic population synchrony in the emergence of cortical feature selectivity.

Authors:  Sean T Kelly; Jens Kremkow; Jianzhong Jin; Yushi Wang; Qi Wang; Jose-Manuel Alonso; Garrett B Stanley
Journal:  PLoS Comput Biol       Date:  2014-01-09       Impact factor: 4.475

6.  The influence of population size, noise strength and behavioral task on best-encoded stimulus for neurons with unimodal or monotonic tuning curves.

Authors:  Stuart Yarrow; Peggy Seriès
Journal:  Front Comput Neurosci       Date:  2015-02-17       Impact factor: 2.380

7.  Coding accuracy on the psychophysical scale.

Authors:  Lubomir Kostal; Petr Lansky
Journal:  Sci Rep       Date:  2016-03-29       Impact factor: 4.379

8.  Matched Behavioral and Neural Adaptations for Low Sound Level Echolocation in a Gleaning Bat, Antrozous pallidus.

Authors:  Kevin R Measor; Brian C Leavell; Dustin H Brewton; Jeffrey Rumschlag; Jesse R Barber; Khaleel A Razak
Journal:  eNeuro       Date:  2017-03-02

9.  Moth olfactory receptor neurons adjust their encoding efficiency to temporal statistics of pheromone fluctuations.

Authors:  Marie Levakova; Lubomir Kostal; Christelle Monsempès; Vincent Jacob; Philippe Lucas
Journal:  PLoS Comput Biol       Date:  2018-11-13       Impact factor: 4.475

Review 10.  Adaptive stimulus optimization for sensory systems neuroscience.

Authors:  Christopher DiMattina; Kechen Zhang
Journal:  Front Neural Circuits       Date:  2013-06-06       Impact factor: 3.492

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