Literature DB >> 22422964

Comment on "Widespread RNA and DNA sequence differences in the human transcriptome".

Wei Lin1, Robert Piskol, Meng How Tan, Jin Billy Li.   

Abstract

Li et al. (Research Articles, 1 July 2011, p. 53; published online 19 May 2011) reported widespread differences between the RNA and DNA sequences of the same human cells, including all 12 possible mismatch types. Before accepting such a fundamental claim, a deeper analysis of the sequencing data is required to discern true differences between RNA and DNA from potential artifacts.

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Year:  2012        PMID： 22422964     DOI： 10.1126/science.1210624

Source DB:  PubMed          Journal:  Science        ISSN： 0036-8075            Impact factor:   47.728


  93 in total

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Journal:  Bioinformatics       Date:  2015-08-30       Impact factor: 6.937

2.  RNA Sequencing and Analysis.

Authors:  Kimberly R Kukurba; Stephen B Montgomery
Journal:  Cold Spring Harb Protoc       Date:  2015-04-13

3.  Characterization and comparison of human nuclear and cytosolic editomes.

Authors:  Liang Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-01       Impact factor: 11.205

4.  Reliable identification of genomic variants from RNA-seq data.

Authors:  Robert Piskol; Gokul Ramaswami; Jin Billy Li
Journal:  Am J Hum Genet       Date:  2013-09-26       Impact factor: 11.025

5.  New insights from existing sequence data: generating breakthroughs without a pipette.

Authors:  Alex M Plocik; Brenton R Graveley
Journal:  Mol Cell       Date:  2013-02-21       Impact factor: 17.970

6.  Human coding RNA editing is generally nonadaptive.

Authors:  Guixia Xu; Jianzhi Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-24       Impact factor: 11.205

Review 7.  Single-nucleotide variants in human RNA: RNA editing and beyond.

Authors:  Yan Guo; Hui Yu; David C Samuels; Wei Yue; Scott Ness; Ying-Yong Zhao
Journal:  Brief Funct Genomics       Date:  2019-02-14       Impact factor: 4.241

8.  The difficult calls in RNA editing. Interviewed by H Craig Mak.

Authors:  Brenda Bass; Heather Hundley; Jin Billy Li; Zhiyu Peng; Joe Pickrell; Xinshu Grace Xiao; Li Yang
Journal:  Nat Biotechnol       Date:  2012-12       Impact factor: 54.908

9.  Assessing the validity and reproducibility of genome-scale predictions.

Authors:  Lauren A Sugden; Michael R Tackett; Yiannis A Savva; William A Thompson; Charles E Lawrence
Journal:  Bioinformatics       Date:  2013-09-17       Impact factor: 6.937

10.  Inconsistency and features of single nucleotide variants detected in whole exome sequencing versus transcriptome sequencing: A case study in lung cancer.

Authors:  Timothy D O'Brien; Peilin Jia; Junfeng Xia; Uma Saxena; Hailing Jin; Huy Vuong; Pora Kim; Qingguo Wang; Martin J Aryee; Mari Mino-Kenudson; Jeffrey A Engelman; Long P Le; A John Iafrate; Rebecca S Heist; William Pao; Zhongming Zhao
Journal:  Methods       Date:  2015-04-23       Impact factor: 3.608
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