Literature DB >> 22422677

Mouse genetic and phenotypic resources for human genetics.

Paul N Schofield1, Robert Hoehndorf, Georgios V Gkoutos.   

Abstract

The use of model organisms to provide information on gene function has proved to be a powerful approach to our understanding of both human disease and fundamental mammalian biology. Large-scale community projects using mice, based on forward and reverse genetics, and now the pan-genomic phenotyping efforts of the International Mouse Phenotyping Consortium, are generating resources on an unprecedented scale, which will be extremely valuable to human genetics and medicine. We discuss the nature and availability of data, mice and embryonic stem cells from these large-scale programmes, the use of these resources to help prioritize and validate candidate genes in human genetic association studies, and how they can improve our understanding of the underlying pathobiology of human disease.
© 2012 Wiley Periodicals, Inc.

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Year:  2012        PMID: 22422677      PMCID: PMC3473354          DOI: 10.1002/humu.22077

Source DB:  PubMed          Journal:  Hum Mutat        ISSN: 1059-7794            Impact factor:   4.878


  91 in total

1.  Large scale comparison of global gene expression patterns in human and mouse.

Authors:  Xiangqun Zheng-Bradley; Johan Rung; Helen Parkinson; Alvis Brazma
Journal:  Genome Biol       Date:  2010-12-23       Impact factor: 13.583

2.  FIMRe: Federation of International Mouse Resources: global networking of resource centers.

Authors:  Muriel Davisson
Journal:  Mamm Genome       Date:  2006-05       Impact factor: 2.957

3.  Potential etiologic and functional implications of genome-wide association loci for human diseases and traits.

Authors:  Lucia A Hindorff; Praveen Sethupathy; Heather A Junkins; Erin M Ramos; Jayashri P Mehta; Francis S Collins; Teri A Manolio
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-27       Impact factor: 11.205

4.  Reliability, robustness, and reproducibility in mouse behavioral phenotyping: a cross-laboratory study.

Authors:  Silvia Mandillo; Valter Tucci; Sabine M Hölter; Hamid Meziane; Mumna Al Banchaabouchi; Magdalena Kallnik; Heena V Lad; Patrick M Nolan; Abdel-Mouttalib Ouagazzal; Emma L Coghill; Karin Gale; Elisabetta Golini; Sylvie Jacquot; Wojtek Krezel; Andy Parker; Fabrice Riet; Ilka Schneider; Daniela Marazziti; Johan Auwerx; Steve D M Brown; Pierre Chambon; Nadia Rosenthal; Glauco Tocchini-Valentini; Wolfgang Wurst
Journal:  Physiol Genomics       Date:  2008-05-27       Impact factor: 3.107

5.  A common layer of interoperability for biomedical ontologies based on OWL EL.

Authors:  Robert Hoehndorf; Michel Dumontier; Anika Oellrich; Sarala Wimalaratne; Dietrich Rebholz-Schuhmann; Paul Schofield; Georgios V Gkoutos
Journal:  Bioinformatics       Date:  2011-02-21       Impact factor: 6.937

Review 6.  The mammalian phenotype ontology: enabling robust annotation and comparative analysis.

Authors:  Cynthia L Smith; Janan T Eppig
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2009 Nov-Dec

7.  Systemic first-line phenotyping.

Authors:  Valérie Gailus-Durner; Helmut Fuchs; Thure Adler; Antonio Aguilar Pimentel; Lore Becker; Ines Bolle; Julia Calzada-Wack; Claudia Dalke; Nicole Ehrhardt; Barbara Ferwagner; Wolfgang Hans; Sabine M Hölter; Gabriele Hölzlwimmer; Marion Horsch; Anahita Javaheri; Magdalena Kallnik; Eva Kling; Christoph Lengger; Corinna Mörth; Ilona Mossbrugger; Beatrix Naton; Cornelia Prehn; Oliver Puk; Birgit Rathkolb; Jan Rozman; Anja Schrewe; Frank Thiele; Jerzy Adamski; Bernhard Aigner; Heidrun Behrendt; Dirk H Busch; Jack Favor; Jochen Graw; Gerhard Heldmaier; Boris Ivandic; Hugo Katus; Martin Klingenspor; Thomas Klopstock; Elisabeth Kremmer; Markus Ollert; Leticia Quintanilla-Martinez; Holger Schulz; Eckhard Wolf; Wolfgang Wurst; Martin Hrabé de Angelis
Journal:  Methods Mol Biol       Date:  2009

Review 8.  ENU mutagenesis, a way forward to understand gene function.

Authors:  Abraham Acevedo-Arozena; Sara Wells; Paul Potter; Michelle Kelly; Roger D Cox; Steve D M Brown
Journal:  Annu Rev Genomics Hum Genet       Date:  2008       Impact factor: 8.929

9.  A systematic survey of loss-of-function variants in human protein-coding genes.

Authors:  Daniel G MacArthur; Suganthi Balasubramanian; Adam Frankish; Ni Huang; James Morris; Klaudia Walter; Luke Jostins; Lukas Habegger; Joseph K Pickrell; Stephen B Montgomery; Cornelis A Albers; Zhengdong D Zhang; Donald F Conrad; Gerton Lunter; Hancheng Zheng; Qasim Ayub; Mark A DePristo; Eric Banks; Min Hu; Robert E Handsaker; Jeffrey A Rosenfeld; Menachem Fromer; Mike Jin; Xinmeng Jasmine Mu; Ekta Khurana; Kai Ye; Mike Kay; Gary Ian Saunders; Marie-Marthe Suner; Toby Hunt; If H A Barnes; Clara Amid; Denise R Carvalho-Silva; Alexandra H Bignell; Catherine Snow; Bryndis Yngvadottir; Suzannah Bumpstead; David N Cooper; Yali Xue; Irene Gallego Romero; Jun Wang; Yingrui Li; Richard A Gibbs; Steven A McCarroll; Emmanouil T Dermitzakis; Jonathan K Pritchard; Jeffrey C Barrett; Jennifer Harrow; Matthew E Hurles; Mark B Gerstein; Chris Tyler-Smith
Journal:  Science       Date:  2012-02-17       Impact factor: 47.728

10.  EuroPhenome and EMPReSS: online mouse phenotyping resource.

Authors:  Ann-Marie Mallon; Andrew Blake; John M Hancock
Journal:  Nucleic Acids Res       Date:  2007-09-28       Impact factor: 16.971

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  35 in total

1.  Rationally optimized cryopreservation of multiple mouse embryonic stem cell lines: I--Comparative fundamental cryobiology of multiple mouse embryonic stem cell lines and the implications for embryonic stem cell cryopreservation protocols.

Authors:  Corinna M Kashuba; James D Benson; John K Critser
Journal:  Cryobiology       Date:  2013-12-30       Impact factor: 2.487

Review 2.  Computational tools for comparative phenomics: the role and promise of ontologies.

Authors:  Georgios V Gkoutos; Paul N Schofield; Robert Hoehndorf
Journal:  Mamm Genome       Date:  2012-07-20       Impact factor: 2.957

3.  The need for mouse models in osteoporosis genetics research.

Authors:  Cheryl L Ackert-Bicknell; Matthew A Hibbs
Journal:  Bonekey Rep       Date:  2012-06-13

Review 4.  Using genetic mouse models to gain insight into glaucoma: Past results and future possibilities.

Authors:  Kimberly A Fernandes; Jeffrey M Harder; Pete A Williams; Rebecca L Rausch; Amy E Kiernan; K Saidas Nair; Michael G Anderson; Simon W M John; Gareth R Howell; Richard T Libby
Journal:  Exp Eye Res       Date:  2015-06-24       Impact factor: 3.467

Review 5.  In vivo metabolite profiling as a means to identify uncharacterized lipase function: recent success stories within the alpha beta hydrolase domain (ABHD) enzyme family.

Authors:  Gwynneth Thomas; Amanda L Brown; J Mark Brown
Journal:  Biochim Biophys Acta       Date:  2014-01-12

6.  Phenotypic overlap in the contribution of individual genes to CNV pathogenicity revealed by cross-species computational analysis of single-gene mutations in humans, mice and zebrafish.

Authors:  Sandra C Doelken; Sebastian Köhler; Christopher J Mungall; Georgios V Gkoutos; Barbara J Ruef; Cynthia Smith; Damian Smedley; Sebastian Bauer; Eva Klopocki; Paul N Schofield; Monte Westerfield; Peter N Robinson; Suzanna E Lewis
Journal:  Dis Model Mech       Date:  2012-10-25       Impact factor: 5.758

Review 7.  Post-genomic behavioral genetics: From revolution to routine.

Authors:  D G Ashbrook; M K Mulligan; R W Williams
Journal:  Genes Brain Behav       Date:  2017-12-21       Impact factor: 3.449

8.  Mitochondrial calcium uniporter is essential for hearing and hair cell preservation in congenic FVB/NJ mice.

Authors:  Mayakannan Manikandan; Steven Walker; Aditi R Deshmukh; Elizabeth Perea; Danqi Wang; Kumar N Alagramam; Ruben Stepanyan
Journal:  Sci Rep       Date:  2021-05-06       Impact factor: 4.379

9.  Improvement of short straws for sperm cryopreservation: installing an air-permeable filter facilitates handling.

Authors:  Ryosuke Kaneko; Toshie Kakinuma; Sachiko Sato; Atsushi Jinno-Oue
Journal:  J Reprod Dev       Date:  2021-04-14       Impact factor: 2.214

Review 10.  Pluripotent stem cell-derived hepatocyte-like cells.

Authors:  R E Schwartz; H E Fleming; S R Khetani; S N Bhatia
Journal:  Biotechnol Adv       Date:  2014-01-16       Impact factor: 14.227

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