Literature DB >> 22418096

Phase retrieval from single biomolecule diffraction pattern.

Shiro Ikeda1, Hidetoshi Kono.   

Abstract

In this paper, we propose the SPR (sparse phase retrieval) method, which is a new phase retrieval method for coherent x-ray diffraction imaging (CXDI). Conventional phase retrieval methods effectively solve the problem for high signal-to-noise ratio measurements, but would not be sufficient for single biomolecular imaging which is expected to be realized with femto-second x-ray free electron laser pulses. The SPR method is based on the Bayesian statistics. It does not need to set the object boundary constraint that is required by the commonly used hybrid input-output (HIO) method, instead a prior distribution is defined with an exponential distribution and used for the estimation. Simulation results demonstrate that the proposed method reconstructs the electron density under a noisy condition even some central pixels are masked.

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Year:  2012        PMID: 22418096     DOI: 10.1364/OE.20.003375

Source DB:  PubMed          Journal:  Opt Express        ISSN: 1094-4087            Impact factor:   3.894


  2 in total

1.  Perspectives for imaging single protein molecules with the present design of the European XFEL.

Authors:  Kartik Ayyer; Gianluca Geloni; Vitali Kocharyan; Evgeni Saldin; Svitozar Serkez; Oleksandr Yefanov; Igor Zagorodnov
Journal:  Struct Dyn       Date:  2015-04-27       Impact factor: 2.920

2.  Refinement for single-nanoparticle structure determination from low-quality single-shot coherent diffraction data.

Authors:  Toshiyuki Nishiyama; Akinobu Niozu; Christoph Bostedt; Ken R Ferguson; Yuhiro Sato; Christopher Hutchison; Kiyonobu Nagaya; Hironobu Fukuzawa; Koji Motomura; Shin-Ichi Wada; Tsukasa Sakai; Kenji Matsunami; Kazuhiro Matsuda; Tetsuya Tachibana; Yuta Ito; Weiqing Xu; Subhendu Mondal; Takayuki Umemoto; Christophe Nicolas; Catalin Miron; Takashi Kameshima; Yasumasa Joti; Kensuke Tono; Takaki Hatsui; Makina Yabashi; Kiyoshi Ueda
Journal:  IUCrJ       Date:  2020-01-01       Impact factor: 4.769

  2 in total

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