Literature DB >> 22414027

Modulation of structure and dynamics by disulfide bond formation in unfolded states.

Robert Silvers1, Friederike Sziegat, Hideki Tachibana, Shin-ichi Segawa, Sara Whittaker, Ulrich L Günther, Frank Gabel, Jie-rong Huang, Martin Blackledge, Julia Wirmer-Bartoschek, Harald Schwalbe.   

Abstract

During oxidative folding, the formation of disulfide bonds has profound effects on guiding the protein folding pathway. Until now, comparatively little is known about the changes in the conformational dynamics in folding intermediates of proteins that contain only a subset of their native disulfide bonds. In this comprehensive study, we probe the conformational landscape of non-native states of lysozyme containing a single native disulfide bond utilizing nuclear magnetic resonance (NMR) spectroscopy, small-angle X-ray scattering (SAXS), circular dichroism (CD) data, and modeling approaches. The impact on conformational dynamics varies widely depending on the loop size of the single disulfide variants and deviates significantly from random coil predictions for both NMR and SAXS data. From these experiments, we conclude that the introduction of single disulfides spanning a large portion of the polypeptide chain shifts the structure and dynamics of hydrophobic core residues of the protein so that these regions exhibit levels of order comparable to the native state on the nanosecond time scale.
© 2012 American Chemical Society

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Year:  2012        PMID: 22414027     DOI: 10.1021/ja3009506

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  11 in total

1.  Energetically significant networks of coupled interactions within an unfolded protein.

Authors:  Jae-Hyun Cho; Wenli Meng; Satoshi Sato; Eun Young Kim; Hermann Schindelin; Daniel P Raleigh
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-06       Impact factor: 11.205

Review 2.  The dynamic duo: combining NMR and small angle scattering in structural biology.

Authors:  Janosch Hennig; Michael Sattler
Journal:  Protein Sci       Date:  2014-04-17       Impact factor: 6.725

3.  Comprehensive analysis of contributions from protein conformational stability and major histocompatibility complex class II-peptide binding affinity to CD4+ epitope immunogenicity in HIV-1 envelope glycoprotein.

Authors:  Tingfeng Li; N Kalaya Steede; Hong-Nam P Nguyen; Lucy C Freytag; James B McLachlan; Ramgopal R Mettu; James E Robinson; Samuel J Landry
Journal:  J Virol       Date:  2014-06-11       Impact factor: 5.103

Review 4.  Relating sequence encoded information to form and function of intrinsically disordered proteins.

Authors:  Rahul K Das; Kiersten M Ruff; Rohit V Pappu
Journal:  Curr Opin Struct Biol       Date:  2015-04-02       Impact factor: 6.809

5.  Synthetic Liposomal Mimics of Biological Viruses for the Study of Immune Responses to Infection and Vaccination.

Authors:  Wei-Yun Wholey; James L Mueller; Corey Tan; Jeremy F Brooks; Julie Zikherman; Wei Cheng
Journal:  Bioconjug Chem       Date:  2020-01-23       Impact factor: 4.774

6.  Reinvestigation of the oxidative folding pathways of hen egg white lysozyme: switching of the major pathways by temperature control.

Authors:  Kenta Arai; Wataru Shibagaki; Reina Shinozaki; Michio Iwaoka
Journal:  Int J Mol Sci       Date:  2013-06-26       Impact factor: 5.923

Review 7.  Local order in the unfolded state: conformational biases and nearest neighbor interactions.

Authors:  Siobhan Toal; Reinhard Schweitzer-Stenner
Journal:  Biomolecules       Date:  2014-07-24

8.  Simple MD-based model for oxidative folding of peptides and proteins.

Authors:  Sergei A Izmailov; Ivan S Podkorytov; Nikolai R Skrynnikov
Journal:  Sci Rep       Date:  2017-08-24       Impact factor: 4.379

9.  Multi-state recognition pathway of the intrinsically disordered protein kinase inhibitor by protein kinase A.

Authors:  Cristina Olivieri; Yingjie Wang; Geoffrey C Li; Manu V S; Jonggul Kim; Benjamin R Stultz; Matthew Neibergall; Fernando Porcelli; Joseph M Muretta; David Dt Thomas; Jiali Gao; Donald K Blumenthal; Susan S Taylor; Gianluigi Veglia
Journal:  Elife       Date:  2020-04-27       Impact factor: 8.140

Review 10.  Revisiting the Formation of a Native Disulfide Bond: Consequences for Protein Regeneration and Beyond.

Authors:  Mahesh Narayan
Journal:  Molecules       Date:  2020-11-16       Impact factor: 4.411

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