Literature DB >> 22412742

Diethyl 2,6-dimethyl-4-(5-phenyl-1H-pyrazol-4-yl)-1,4-dihydro-pyridine-3,5-dicarboxyl-ate.

Hoong-Kun Fun, Chin Wei Ooi, Shridhar Malladi, K N Shivananda, Arun M Isloor.   

Abstract

In the title compound, C(22)H(25)N(3)O(4), the dihydro-pyridine ring adopts a flattened boat conformation. The pyrazole ring makes a dihedral angle of 29.04 (5)° with the benzene ring. The mol-ecular structure is stabilized by an intra-molecular C-H⋯O hydrogen bond which generates an S(9) ring motif. In the crystal, mol-ecules are linked via N-H⋯O and C-H⋯N hydrogen bonds into a two-dimensional network parallel to the ab plane. The crystal structure is further consolidated by weak C-H⋯π inter-actions.

Entities:  

Year:  2012        PMID: 22412742      PMCID: PMC3297939          DOI: 10.1107/S1600536812008173

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details and applications of dihydro­pyridine, see: Stout & Meyers (1982 ▶); Böcker & Guengerich (1986 ▶); Vo et al. (1995 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For ring conformation, see: Cremer & Pople (1975 ▶). For a related structure, see: Fun et al. (2011 ▶). For bond-length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used for data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C22H25N3O4 M = 395.45 Monoclinic, a = 9.7700 (4) Å b = 8.6431 (4) Å c = 24.8878 (9) Å β = 105.646 (2)° V = 2023.73 (14) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.32 × 0.32 × 0.20 mm

Data collection

Bruker APEX DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.972, T max = 0.982 27563 measured reflections 7361 independent reflections 5987 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.118 S = 1.04 7361 reflections 266 parameters H-atom parameters constrained Δρmax = 0.47 e Å−3 Δρmin = −0.19 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812008173/is5081sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812008173/is5081Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812008173/is5081Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H25N3O4F(000) = 840
Mr = 395.45Dx = 1.298 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 8661 reflections
a = 9.7700 (4) Åθ = 3.3–32.7°
b = 8.6431 (4) ŵ = 0.09 mm1
c = 24.8878 (9) ÅT = 100 K
β = 105.646 (2)°Block, colourless
V = 2023.73 (14) Å30.32 × 0.32 × 0.20 mm
Z = 4
Bruker APEX DUO CCD area-detector diffractometer7361 independent reflections
Radiation source: fine-focus sealed tube5987 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.031
φ and ω scansθmax = 32.7°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −14→14
Tmin = 0.972, Tmax = 0.982k = −13→12
27563 measured reflectionsl = −37→37
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.118H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0611P)2 + 0.510P] where P = (Fo2 + 2Fc2)/3
7361 reflections(Δ/σ)max < 0.001
266 parametersΔρmax = 0.47 e Å3
0 restraintsΔρmin = −0.19 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.58615 (8)0.77001 (8)0.04877 (3)0.01973 (14)
O20.46241 (7)0.57230 (8)0.07072 (3)0.01770 (14)
O30.81230 (7)0.30340 (9)0.29673 (3)0.02111 (15)
O40.59607 (7)0.39878 (9)0.25573 (3)0.01732 (14)
N10.64943 (8)0.08372 (9)0.08152 (3)0.01486 (14)
H20.6195−0.01210.06950.018*
N20.78581 (8)0.12321 (10)0.08546 (3)0.01612 (15)
N30.93751 (8)0.59581 (10)0.17656 (3)0.01588 (15)
H11.02050.64460.18540.019*
C10.34348 (10)0.08036 (11)0.05798 (4)0.01656 (16)
H1A0.38230.04150.03050.020*
C20.20104 (10)0.05325 (12)0.05454 (4)0.01944 (18)
H2A0.1454−0.00360.02490.023*
C30.14161 (10)0.11085 (13)0.09525 (4)0.02181 (19)
H3A0.04630.09300.09300.026*
C40.22583 (10)0.19531 (13)0.13937 (4)0.02233 (19)
H4A0.18630.23430.16670.027*
C50.36860 (10)0.22241 (12)0.14327 (4)0.01838 (17)
H5A0.42390.27860.17320.022*
C60.42916 (9)0.16544 (10)0.10232 (4)0.01384 (15)
C70.58005 (9)0.18941 (10)0.10518 (3)0.01267 (15)
C80.80244 (9)0.25795 (11)0.11222 (4)0.01455 (15)
H8A0.88660.31430.12080.017*
C90.67828 (9)0.30610 (10)0.12621 (3)0.01221 (15)
C100.66775 (8)0.45725 (10)0.15560 (3)0.01229 (14)
H10A0.57150.46850.15990.015*
C110.77430 (9)0.45646 (10)0.21308 (3)0.01313 (15)
C120.90530 (9)0.51818 (11)0.22054 (4)0.01474 (16)
C130.83443 (9)0.64531 (10)0.13003 (4)0.01427 (15)
C140.69904 (9)0.59162 (10)0.12121 (3)0.01304 (15)
C150.58227 (9)0.65490 (10)0.07696 (4)0.01430 (15)
C160.33872 (10)0.62787 (13)0.02848 (4)0.02195 (19)
H16A0.35220.6144−0.00840.026*
H16B0.32350.73690.03410.026*
C170.21408 (12)0.53514 (17)0.03417 (6)0.0380 (3)
H17A0.13100.56470.00540.057*
H17B0.19850.55420.07010.057*
H17C0.23270.42710.03060.057*
C180.73457 (9)0.37847 (11)0.25931 (4)0.01416 (15)
C190.54490 (10)0.33281 (13)0.30055 (4)0.02049 (18)
H19A0.60290.36770.33650.025*
H19B0.54820.22070.29950.025*
C200.39406 (10)0.38793 (14)0.29101 (4)0.0240 (2)
H20A0.35710.35250.32090.036*
H20B0.33690.34750.25630.036*
H20C0.39190.49890.28980.036*
C210.88930 (10)0.75484 (12)0.09397 (4)0.01890 (17)
H21A0.83780.73980.05560.028*
H21B0.98850.73540.09840.028*
H21C0.87670.85940.10480.028*
C221.02486 (10)0.51553 (13)0.27302 (4)0.02183 (19)
H22A0.98700.50490.30460.033*
H22B1.07780.61020.27610.033*
H22C1.08640.42970.27190.033*
U11U22U33U12U13U23
O10.0228 (3)0.0136 (3)0.0205 (3)−0.0022 (3)0.0019 (3)0.0027 (2)
O20.0125 (3)0.0169 (3)0.0205 (3)−0.0013 (2)−0.0009 (2)0.0040 (2)
O30.0191 (3)0.0240 (4)0.0201 (3)0.0072 (3)0.0052 (2)0.0062 (3)
O40.0129 (3)0.0244 (4)0.0156 (3)0.0005 (2)0.0055 (2)0.0038 (2)
N10.0135 (3)0.0128 (3)0.0189 (3)−0.0013 (3)0.0055 (3)−0.0025 (3)
N20.0128 (3)0.0155 (4)0.0205 (3)−0.0002 (3)0.0053 (3)−0.0011 (3)
N30.0111 (3)0.0180 (4)0.0180 (3)−0.0029 (3)0.0031 (3)0.0005 (3)
C10.0158 (4)0.0175 (4)0.0166 (4)−0.0030 (3)0.0046 (3)−0.0020 (3)
C20.0148 (4)0.0208 (4)0.0214 (4)−0.0044 (3)0.0027 (3)−0.0024 (3)
C30.0139 (4)0.0231 (5)0.0293 (5)−0.0038 (3)0.0073 (3)−0.0022 (4)
C40.0173 (4)0.0260 (5)0.0268 (5)−0.0043 (4)0.0112 (3)−0.0063 (4)
C50.0155 (4)0.0208 (4)0.0202 (4)−0.0044 (3)0.0071 (3)−0.0052 (3)
C60.0128 (3)0.0135 (4)0.0157 (3)−0.0022 (3)0.0046 (3)0.0000 (3)
C70.0124 (3)0.0126 (4)0.0134 (3)−0.0010 (3)0.0041 (3)−0.0007 (3)
C80.0117 (3)0.0141 (4)0.0176 (4)−0.0001 (3)0.0035 (3)0.0000 (3)
C90.0112 (3)0.0120 (4)0.0131 (3)−0.0006 (3)0.0028 (3)0.0001 (3)
C100.0109 (3)0.0125 (4)0.0132 (3)−0.0003 (3)0.0027 (3)−0.0006 (3)
C110.0114 (3)0.0145 (4)0.0132 (3)0.0002 (3)0.0028 (3)−0.0007 (3)
C120.0122 (3)0.0157 (4)0.0158 (4)−0.0008 (3)0.0028 (3)−0.0020 (3)
C130.0140 (3)0.0127 (4)0.0163 (3)−0.0007 (3)0.0043 (3)−0.0010 (3)
C140.0129 (3)0.0115 (4)0.0144 (3)−0.0002 (3)0.0031 (3)−0.0004 (3)
C150.0147 (3)0.0120 (4)0.0157 (3)−0.0006 (3)0.0033 (3)−0.0017 (3)
C160.0156 (4)0.0219 (5)0.0234 (4)0.0011 (3)−0.0033 (3)0.0044 (4)
C170.0173 (5)0.0401 (7)0.0481 (7)−0.0053 (5)−0.0058 (5)0.0133 (6)
C180.0129 (3)0.0144 (4)0.0150 (3)0.0007 (3)0.0035 (3)−0.0015 (3)
C190.0205 (4)0.0250 (5)0.0185 (4)−0.0006 (4)0.0096 (3)0.0046 (3)
C200.0181 (4)0.0350 (6)0.0214 (4)−0.0031 (4)0.0098 (3)−0.0007 (4)
C210.0171 (4)0.0170 (4)0.0237 (4)−0.0021 (3)0.0074 (3)0.0034 (3)
C220.0147 (4)0.0285 (5)0.0192 (4)−0.0039 (4)−0.0009 (3)0.0004 (4)
O1—C151.2239 (11)C9—C101.5141 (12)
O2—C151.3442 (11)C10—C141.5219 (12)
O2—C161.4529 (11)C10—C111.5254 (11)
O3—C181.2181 (11)C10—H10A0.9800
O4—C181.3434 (10)C11—C121.3524 (12)
O4—C191.4560 (11)C11—C181.4730 (12)
N1—N21.3531 (10)C12—C221.4993 (12)
N1—C71.3623 (11)C13—C141.3626 (12)
N1—H20.9024C13—C211.4995 (13)
N2—C81.3296 (12)C14—C151.4613 (12)
N3—C131.3817 (11)C16—C171.4961 (16)
N3—C121.3905 (11)C16—H16A0.9700
N3—H10.8870C16—H16B0.9700
C1—C21.3910 (12)C17—H17A0.9600
C1—C61.4002 (12)C17—H17B0.9600
C1—H1A0.9300C17—H17C0.9600
C2—C31.3887 (14)C19—C201.5055 (14)
C2—H2A0.9300C19—H19A0.9700
C3—C41.3886 (14)C19—H19B0.9700
C3—H3A0.9300C20—H20A0.9600
C4—C51.3918 (13)C20—H20B0.9600
C4—H4A0.9300C20—H20C0.9600
C5—C61.3987 (12)C21—H21A0.9600
C5—H5A0.9300C21—H21B0.9600
C6—C71.4713 (11)C21—H21C0.9600
C7—C91.3933 (12)C22—H22A0.9600
C8—C91.4120 (12)C22—H22B0.9600
C8—H8A0.9300C22—H22C0.9600
C15—O2—C16115.90 (7)C14—C13—N3119.09 (8)
C18—O4—C19116.48 (7)C14—C13—C21127.35 (8)
N2—N1—C7113.24 (7)N3—C13—C21113.56 (7)
N2—N1—H2118.7C13—C14—C15121.38 (8)
C7—N1—H2127.2C13—C14—C10120.18 (8)
C8—N2—N1104.02 (7)C15—C14—C10118.36 (7)
C13—N3—C12122.73 (7)O1—C15—O2121.75 (8)
C13—N3—H1118.1O1—C15—C14126.70 (8)
C12—N3—H1114.8O2—C15—C14111.53 (8)
C2—C1—C6120.83 (8)O2—C16—C17107.09 (9)
C2—C1—H1A119.6O2—C16—H16A110.3
C6—C1—H1A119.6C17—C16—H16A110.3
C3—C2—C1120.19 (9)O2—C16—H16B110.3
C3—C2—H2A119.9C17—C16—H16B110.3
C1—C2—H2A119.9H16A—C16—H16B108.6
C4—C3—C2119.35 (8)C16—C17—H17A109.5
C4—C3—H3A120.3C16—C17—H17B109.5
C2—C3—H3A120.3H17A—C17—H17B109.5
C3—C4—C5120.83 (9)C16—C17—H17C109.5
C3—C4—H4A119.6H17A—C17—H17C109.5
C5—C4—H4A119.6H17B—C17—H17C109.5
C4—C5—C6120.19 (9)O3—C18—O4121.96 (8)
C4—C5—H5A119.9O3—C18—C11126.86 (8)
C6—C5—H5A119.9O4—C18—C11111.18 (7)
C5—C6—C1118.60 (8)O4—C19—C20106.20 (8)
C5—C6—C7122.03 (8)O4—C19—H19A110.5
C1—C6—C7119.36 (8)C20—C19—H19A110.5
N1—C7—C9105.97 (7)O4—C19—H19B110.5
N1—C7—C6119.57 (8)C20—C19—H19B110.5
C9—C7—C6134.41 (8)H19A—C19—H19B108.7
N2—C8—C9112.62 (8)C19—C20—H20A109.5
N2—C8—H8A123.7C19—C20—H20B109.5
C9—C8—H8A123.7H20A—C20—H20B109.5
C7—C9—C8104.15 (7)C19—C20—H20C109.5
C7—C9—C10132.57 (7)H20A—C20—H20C109.5
C8—C9—C10123.24 (7)H20B—C20—H20C109.5
C9—C10—C14109.67 (7)C13—C21—H21A109.5
C9—C10—C11109.33 (7)C13—C21—H21B109.5
C14—C10—C11109.94 (7)H21A—C21—H21B109.5
C9—C10—H10A109.3C13—C21—H21C109.5
C14—C10—H10A109.3H21A—C21—H21C109.5
C11—C10—H10A109.3H21B—C21—H21C109.5
C12—C11—C18120.81 (8)C12—C22—H22A109.5
C12—C11—C10120.55 (8)C12—C22—H22B109.5
C18—C11—C10118.53 (7)H22A—C22—H22B109.5
C11—C12—N3119.27 (8)C12—C22—H22C109.5
C11—C12—C22126.85 (8)H22A—C22—H22C109.5
N3—C12—C22113.87 (8)H22B—C22—H22C109.5
C7—N1—N2—C8−0.22 (10)C18—C11—C12—N3−177.72 (8)
C6—C1—C2—C30.12 (15)C10—C11—C12—N36.18 (13)
C1—C2—C3—C4−0.14 (16)C18—C11—C12—C221.13 (15)
C2—C3—C4—C5−0.14 (17)C10—C11—C12—C22−174.97 (9)
C3—C4—C5—C60.44 (16)C13—N3—C12—C1115.77 (13)
C4—C5—C6—C1−0.45 (15)C13—N3—C12—C22−163.22 (9)
C4—C5—C6—C7−179.10 (9)C12—N3—C13—C14−13.03 (13)
C2—C1—C6—C50.17 (14)C12—N3—C13—C21167.59 (8)
C2—C1—C6—C7178.86 (9)N3—C13—C14—C15171.93 (8)
N2—N1—C7—C9−0.16 (10)C21—C13—C14—C15−8.78 (14)
N2—N1—C7—C6177.68 (7)N3—C13—C14—C10−11.41 (13)
C5—C6—C7—N1151.31 (9)C21—C13—C14—C10167.88 (8)
C1—C6—C7—N1−27.33 (12)C9—C10—C14—C13−90.92 (9)
C5—C6—C7—C9−31.60 (15)C11—C10—C14—C1329.33 (11)
C1—C6—C7—C9149.76 (10)C9—C10—C14—C1585.84 (9)
N1—N2—C8—C90.52 (10)C11—C10—C14—C15−153.91 (7)
N1—C7—C9—C80.44 (9)C16—O2—C15—O10.21 (13)
C6—C7—C9—C8−176.93 (9)C16—O2—C15—C14178.67 (8)
N1—C7—C9—C10178.03 (9)C13—C14—C15—O1−9.87 (14)
C6—C7—C9—C100.66 (17)C10—C14—C15—O1173.41 (9)
N2—C8—C9—C7−0.62 (10)C13—C14—C15—O2171.76 (8)
N2—C8—C9—C10−178.49 (8)C10—C14—C15—O2−4.96 (11)
C7—C9—C10—C14−118.96 (10)C15—O2—C16—C17−171.85 (9)
C8—C9—C10—C1458.24 (10)C19—O4—C18—O32.98 (13)
C7—C9—C10—C11120.42 (10)C19—O4—C18—C11−177.36 (8)
C8—C9—C10—C11−62.38 (10)C12—C11—C18—O3−33.38 (14)
C9—C10—C11—C1293.77 (10)C10—C11—C18—O3142.81 (9)
C14—C10—C11—C12−26.69 (11)C12—C11—C18—O4146.98 (9)
C9—C10—C11—C18−82.43 (9)C10—C11—C18—O4−36.83 (11)
C14—C10—C11—C18157.11 (7)C18—O4—C19—C20172.95 (8)
D—H···AD—HH···AD···AD—H···A
N3—H1···O3i0.892.092.9597 (12)167
N1—H2···O1ii0.901.962.8506 (10)171
C3—H3A···N2iii0.932.513.4202 (13)164
C5—H5A···O40.932.503.4266 (12)172
C21—H21C···N2iv0.962.453.3300 (14)153
C16—H16A···Cg1v0.972.803.5318 (11)133
C17—H17C···Cg20.962.993.7750 (15)140
C19—H19A···Cg2vi0.972.883.7079 (11)144
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the N1/N2/C7–C9 and C1–C6 rings.

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H1⋯O3i0.892.092.9597 (12)167
N1—H2⋯O1ii0.901.962.8506 (10)171
C3—H3A⋯N2iii0.932.513.4202 (13)164
C5—H5A⋯O40.932.503.4266 (12)172
C21—H21C⋯N2iv0.962.453.3300 (14)153
C16—H16ACg1v0.972.803.5318 (11)133
C17—H17CCg20.962.993.7750 (15)140
C19—H19ACg2vi0.972.883.7079 (11)144

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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3.  Oxidation of 4-aryl- and 4-alkyl-substituted 2,6-dimethyl-3,5-bis(alkoxycarbonyl)-1,4-dihydropyridines by human liver microsomes and immunochemical evidence for the involvement of a form of cytochrome P-450.

Authors:  R H Böcker; F P Guengerich
Journal:  J Med Chem       Date:  1986-09       Impact factor: 7.446

4.  Diethyl 4-[2-(4-meth-oxy-phen-yl)-1H-pyrazol-3-yl]-2,6-dimethyl-1,4-dihydro-pyridine-3,5-dicarboxyl-ate.

Authors:  Hoong-Kun Fun; Madhukar Hemamalini; A M Vijesh; A M Isloor; Shridhar Malladi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-14

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  1 in total

1.  Dimethyl 4-[3-(4-meth-oxy-phen-yl)-1-phenyl-1H-pyrazol-4-yl]-2,6-dimethyl-1,4-dihydro-pyridine-3,5-dicarboxyl-ate dihydrate.

Authors:  Hoong-Kun Fun; Chin Wei Ooi; B Garudachari; Kammasandra Nanjunda Shivananda; Arun M Isloor
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-27
  1 in total

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