Literature DB >> 22412706

3,3'-[1,4-Phenyl-enebis(methyl-ene)]-bis-(1-propyl-benzimidazolium) dichloride dihydrate.

Rosenani A Haque, Muhammad Adnan Iqbal, Safaa A Ahmad, Tze Shyang Chia, Hoong-Kun Fun.   

Abstract

The asymmetric unit of the title compound, C(28)H(32)N(4) (2+)·2Cl(-)·2H(2)O, contains half of a 3,3'-[1,4-phenyl-enebis(methyl-ene)]bis-(1-propyl-benzimidazolium) cation, one chloride anion and one water mol-ecule. The complete cation is generated by a crystallographic inversion center. The central benzene ring forms a dihedral angle of 66.06 (11)° with its adjacent benzimidazolium ring system. In the crystal, the cations, anions and water mol-ecules are linked by O-H⋯Cl, C-H⋯O and C-H⋯Cl hydrogen bonds into a three-dimensional network. The crystal packing is further stabilized by π-π inter-actions, with centroid-centroid distances of 3.5561 (15) and 3.6708 (15) Å.

Entities:  

Year:  2012        PMID: 22412706      PMCID: PMC3297903          DOI: 10.1107/S1600536812007738

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details and applications of benzimidazole derivatives, see: Narasimhan et al. (2012 ▶). For related structures, see: Haque et al. (2011 ▶, 2012 ▶); Iqbal et al. (2012 ▶). For reference bond lengths, see: Allen et al. (1987 ▶). For the stability of the temperature controller used for data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C28H32N4 2+·2Cl−·2H2O M = 531.51 Monoclinic, a = 8.1177 (5) Å b = 9.1042 (5) Å c = 18.3548 (11) Å β = 94.323 (2)° V = 1352.66 (14) Å3 Z = 2 Mo Kα radiation μ = 0.27 mm−1 T = 100 K 0.47 × 0.23 × 0.14 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.882, T max = 0.962 11942 measured reflections 3085 independent reflections 2660 reflections with I > 2σ(I) R int = 0.053

Refinement

R[F 2 > 2σ(F 2)] = 0.061 wR(F 2) = 0.196 S = 1.08 3085 reflections 172 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.86 e Å−3 Δρmin = −0.48 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812007738/is5076sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812007738/is5076Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812007738/is5076Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C28H32N42+·2Cl·2H2OF(000) = 564
Mr = 531.51Dx = 1.305 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5809 reflections
a = 8.1177 (5) Åθ = 2.5–32.5°
b = 9.1042 (5) ŵ = 0.27 mm1
c = 18.3548 (11) ÅT = 100 K
β = 94.323 (2)°Block, colourless
V = 1352.66 (14) Å30.47 × 0.23 × 0.14 mm
Z = 2
Bruker SMART APEXII CCD area-detector diffractometer3085 independent reflections
Radiation source: fine-focus sealed tube2660 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.053
φ and ω scansθmax = 27.5°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −10→10
Tmin = 0.882, Tmax = 0.962k = −11→11
11942 measured reflectionsl = −22→23
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.061Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.196H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.1065P)2 + 2.1866P] where P = (Fo2 + 2Fc2)/3
3085 reflections(Δ/σ)max < 0.001
172 parametersΔρmax = 0.86 e Å3
0 restraintsΔρmin = −0.48 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.45230 (8)0.59270 (7)0.33489 (4)0.0240 (2)
O1W0.3206 (3)0.8654 (3)0.23712 (12)0.0269 (5)
N10.2941 (3)0.6933 (2)0.04689 (12)0.0175 (5)
N20.2605 (3)0.4951 (2)0.11124 (12)0.0179 (5)
C10.0921 (3)0.9600 (3)−0.05784 (15)0.0201 (5)
H1A0.15490.9329−0.09740.024*
C20.1507 (3)0.9274 (3)0.01358 (15)0.0175 (5)
C30.0581 (3)0.9677 (3)0.07154 (15)0.0201 (5)
H3A0.09770.94580.12030.024*
C40.3152 (3)0.8500 (3)0.02876 (15)0.0206 (5)
H4A0.37960.8579−0.01480.025*
H4B0.37860.89940.06990.025*
C50.2927 (3)0.5759 (3)−0.00194 (15)0.0170 (5)
C60.3152 (3)0.5696 (3)−0.07626 (15)0.0194 (5)
H6A0.33060.6557−0.10420.023*
C70.3140 (3)0.4312 (3)−0.10732 (15)0.0199 (5)
H7A0.32850.4223−0.15800.024*
C80.2918 (3)0.3032 (3)−0.06619 (15)0.0206 (5)
H8A0.29170.2104−0.08980.025*
C90.2701 (3)0.3095 (3)0.00817 (15)0.0199 (5)
H9A0.25530.22350.03620.024*
C100.2715 (3)0.4492 (3)0.03924 (14)0.0172 (5)
C110.2750 (3)0.6401 (3)0.11360 (15)0.0197 (5)
H11A0.27220.69790.15660.024*
C120.2412 (3)0.3977 (3)0.17406 (14)0.0197 (5)
H12A0.27310.45150.21980.024*
H12B0.31640.31250.17130.024*
C130.0641 (3)0.3427 (3)0.17592 (14)0.0208 (5)
H13A0.02670.30060.12780.025*
H13B−0.00930.42620.18560.025*
C140.0517 (4)0.2262 (3)0.23502 (16)0.0276 (6)
H14A−0.06070.18650.23240.041*
H14B0.07790.27050.28320.041*
H14C0.13010.14680.22740.041*
H1W10.377 (6)0.792 (5)0.264 (2)0.050 (12)*
H2W10.392 (6)0.920 (5)0.220 (2)0.046 (12)*
U11U22U33U12U13U23
Cl10.0237 (4)0.0186 (4)0.0300 (4)−0.0012 (2)0.0043 (3)−0.0029 (2)
O1W0.0269 (11)0.0265 (12)0.0276 (11)−0.0050 (9)0.0037 (8)−0.0007 (9)
N10.0159 (10)0.0109 (10)0.0254 (11)0.0014 (8)0.0009 (8)−0.0022 (8)
N20.0163 (10)0.0152 (11)0.0219 (11)0.0002 (8)0.0001 (8)−0.0025 (8)
C10.0189 (12)0.0129 (12)0.0289 (14)−0.0010 (9)0.0052 (10)−0.0004 (10)
C20.0162 (11)0.0066 (11)0.0300 (14)−0.0004 (8)0.0041 (9)−0.0003 (9)
C30.0210 (12)0.0111 (12)0.0281 (13)−0.0007 (9)0.0024 (10)−0.0003 (10)
C40.0173 (12)0.0119 (12)0.0328 (14)0.0002 (9)0.0032 (10)0.0003 (10)
C50.0116 (11)0.0110 (12)0.0280 (13)0.0000 (8)−0.0012 (9)−0.0017 (9)
C60.0154 (12)0.0143 (12)0.0281 (14)−0.0004 (9)−0.0010 (9)0.0032 (10)
C70.0184 (12)0.0169 (13)0.0242 (13)−0.0016 (9)−0.0004 (9)−0.0020 (10)
C80.0204 (12)0.0159 (13)0.0251 (13)−0.0017 (10)−0.0010 (9)−0.0038 (10)
C90.0171 (11)0.0124 (12)0.0301 (14)−0.0004 (9)0.0013 (9)0.0013 (10)
C100.0122 (11)0.0168 (13)0.0224 (13)0.0013 (9)−0.0010 (9)−0.0009 (10)
C110.0142 (11)0.0191 (13)0.0257 (13)0.0028 (9)0.0001 (9)−0.0029 (10)
C120.0186 (12)0.0179 (13)0.0223 (13)0.0027 (9)−0.0013 (9)0.0042 (10)
C130.0175 (12)0.0221 (14)0.0227 (13)0.0023 (10)0.0017 (9)−0.0001 (10)
C140.0257 (14)0.0284 (16)0.0291 (15)0.0031 (11)0.0054 (11)0.0054 (12)
O1W—H1W10.93 (5)C6—C71.382 (4)
O1W—H2W10.84 (5)C6—H6A0.9500
N1—C111.337 (3)C7—C81.407 (4)
N1—C51.395 (3)C7—H7A0.9500
N1—C41.478 (3)C8—C91.390 (4)
N2—C111.326 (4)C8—H8A0.9500
N2—C101.395 (3)C9—C101.393 (4)
N2—C121.472 (3)C9—H9A0.9500
C1—C3i1.392 (4)C11—H11A0.9500
C1—C21.393 (4)C12—C131.526 (4)
C1—H1A0.9500C12—H12A0.9900
C2—C31.397 (4)C12—H12B0.9900
C2—C41.517 (3)C13—C141.526 (4)
C3—C1i1.392 (4)C13—H13A0.9900
C3—H3A0.9500C13—H13B0.9900
C4—H4A0.9900C14—H14A0.9800
C4—H4B0.9900C14—H14B0.9800
C5—C61.391 (4)C14—H14C0.9800
C5—C101.397 (4)
H1W1—O1W—H2W1107 (4)C9—C8—C7121.6 (2)
C11—N1—C5108.4 (2)C9—C8—H8A119.2
C11—N1—C4125.4 (2)C7—C8—H8A119.2
C5—N1—C4126.2 (2)C8—C9—C10116.2 (2)
C11—N2—C10108.5 (2)C8—C9—H9A121.9
C11—N2—C12126.1 (2)C10—C9—H9A121.9
C10—N2—C12125.4 (2)C9—C10—N2131.5 (2)
C3i—C1—C2120.2 (2)C9—C10—C5122.0 (2)
C3i—C1—H1A119.9N2—C10—C5106.5 (2)
C2—C1—H1A119.9N2—C11—N1110.3 (2)
C1—C2—C3119.7 (2)N2—C11—H11A124.8
C1—C2—C4120.4 (2)N1—C11—H11A124.8
C3—C2—C4119.9 (2)N2—C12—C13111.8 (2)
C1i—C3—C2120.1 (3)N2—C12—H12A109.3
C1i—C3—H3A120.0C13—C12—H12A109.3
C2—C3—H3A120.0N2—C12—H12B109.3
N1—C4—C2112.0 (2)C13—C12—H12B109.3
N1—C4—H4A109.2H12A—C12—H12B107.9
C2—C4—H4A109.2C12—C13—C14110.9 (2)
N1—C4—H4B109.2C12—C13—H13A109.5
C2—C4—H4B109.2C14—C13—H13A109.5
H4A—C4—H4B107.9C12—C13—H13B109.5
C6—C5—N1131.8 (2)C14—C13—H13B109.5
C6—C5—C10121.8 (2)H13A—C13—H13B108.1
N1—C5—C10106.3 (2)C13—C14—H14A109.5
C7—C6—C5116.4 (2)C13—C14—H14B109.5
C7—C6—H6A121.8H14A—C14—H14B109.5
C5—C6—H6A121.8C13—C14—H14C109.5
C6—C7—C8122.0 (2)H14A—C14—H14C109.5
C6—C7—H7A119.0H14B—C14—H14C109.5
C8—C7—H7A119.0
C3i—C1—C2—C3−0.1 (4)C8—C9—C10—N2−177.0 (2)
C3i—C1—C2—C4−179.4 (2)C8—C9—C10—C50.2 (4)
C1—C2—C3—C1i0.1 (4)C11—N2—C10—C9177.2 (3)
C4—C2—C3—C1i179.4 (2)C12—N2—C10—C9−1.1 (4)
C11—N1—C4—C2−86.9 (3)C11—N2—C10—C5−0.3 (3)
C5—N1—C4—C294.0 (3)C12—N2—C10—C5−178.6 (2)
C1—C2—C4—N1−103.9 (3)C6—C5—C10—C9−0.6 (4)
C3—C2—C4—N176.9 (3)N1—C5—C10—C9−177.7 (2)
C11—N1—C5—C6−176.6 (3)C6—C5—C10—N2177.2 (2)
C4—N1—C5—C62.6 (4)N1—C5—C10—N20.1 (3)
C11—N1—C5—C100.1 (3)C10—N2—C11—N10.3 (3)
C4—N1—C5—C10179.3 (2)C12—N2—C11—N1178.6 (2)
N1—C5—C6—C7176.8 (2)C5—N1—C11—N2−0.3 (3)
C10—C5—C6—C70.6 (4)C4—N1—C11—N2−179.5 (2)
C5—C6—C7—C8−0.2 (4)C11—N2—C12—C13104.6 (3)
C6—C7—C8—C9−0.1 (4)C10—N2—C12—C13−77.4 (3)
C7—C8—C9—C100.1 (4)N2—C12—C13—C14172.3 (2)
D—H···AD—HH···AD···AD—H···A
O1W—H1W1···Cl10.93 (4)2.29 (4)3.200 (3)166 (4)
O1W—H2W1···Cl1ii0.84 (5)2.30 (4)3.130 (3)170 (4)
C1—H1A···Cl1iii0.952.813.677 (3)153
C4—H4B···Cl1ii0.992.773.741 (3)167
C6—H6A···Cl1iii0.952.763.691 (3)165
C11—H11A···O1W0.952.143.059 (4)163
C12—H12A···Cl10.992.793.747 (3)164
C12—H12B···Cl1iv0.992.753.740 (3)175
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1W1⋯Cl10.93 (4)2.29 (4)3.200 (3)166 (4)
O1W—H2W1⋯Cl1i0.84 (5)2.30 (4)3.130 (3)170 (4)
C1—H1A⋯Cl1ii0.952.813.677 (3)153
C4—H4B⋯Cl1i0.992.773.741 (3)167
C6—H6A⋯Cl1ii0.952.763.691 (3)165
C11—H11A⋯O1W0.952.143.059 (4)163
C12—H12A⋯Cl10.992.793.747 (3)164
C12—H12B⋯Cl1iii0.992.753.740 (3)175

Symmetry codes: (i) ; (ii) ; (iii) .

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-21

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