Literature DB >> 22412705

3-Hy-droxy-2,2-bis-(1H-pyrazol-1-yl)-cyclo-penta-none.

Victor B Rybakov1, Anastasia A Utkina, Alexander V Kurkin, Marina A Yurovskaya.   

Abstract

The title compound, C(11)H(12)N(4)O(2), was unexpectedly obtained in the reaction of α,α'-disubstituted cyclo-penta-none with 1,1,3,3-tetra-meth-oxy-propane in the presence of dioxane saturated with HCl. It belongs to a previously unknown class of gem-bihetaryl ketones which may be useful for screening of new substances with biological activity. In the studied structure, the cyclo-penta-none moiety adopts an envelope conformation, with the hy-droxy-bearing C atom as the flap [deviation from basal plane = 0.643 (3) Å]. The dihedral angle between the two pyrazole rings is 80.02 (8)°. In the crystal, inversion dimers are formed via a pair of O-H⋯N hydrogen bonds.

Entities:  

Year:  2012        PMID: 22412705      PMCID: PMC3297902          DOI: 10.1107/S1600536812007659

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the medicinal chemistry of chiral carbo- and heterocyclic substituents of pyrazole, see: Bennani et al. (2007 ▶); Srivastava et al. (2007 ▶). For the α-amination of carbonyl compounds, see: List (2002 ▶). For standard values of bond lengths in organic compounds, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C11H12N4O2 M = 232.25 Monoclinic, a = 11.4360 (11) Å b = 9.5925 (9) Å c = 11.5968 (11) Å β = 117.25 (2)° V = 1131.0 (3) Å3 Z = 4 Ag Kα radiation λ = 0.56085 Å μ = 0.06 mm−1 T = 295 K 0.20 × 0.20 × 0.20 mm

Data collection

Enraf–Nonius CAD-4 diffractometer 2709 measured reflections 2458 independent reflections 1723 reflections with I > 2σ(I) R int = 0.026 1 standard reflections every 60 min intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.124 S = 1.04 2458 reflections 158 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.18 e Å−3 Δρmin = −0.22 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812007659/yk2045sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812007659/yk2045Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812007659/yk2045Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H12N4O2F(000) = 488
Mr = 232.25Dx = 1.364 Mg m3
Monoclinic, P21/cMelting point = 385–386 K
Hall symbol: -P 2ybcAg Kα radiation, λ = 0.56085 Å
a = 11.4360 (11) ÅCell parameters from 25 reflections
b = 9.5925 (9) Åθ = 10.0–12.0°
c = 11.5968 (11) ŵ = 0.06 mm1
β = 117.25 (2)°T = 295 K
V = 1131.0 (3) Å3Prism, light yellow
Z = 40.20 × 0.20 × 0.20 mm
Enraf–Nonius CAD-4 diffractometerRint = 0.026
Radiation source: fine-focus sealed tubeθmax = 21.0°, θmin = 1.6°
Graphite monochromatorh = −14→12
non–profiled ω scansk = 0→12
2709 measured reflectionsl = 0→14
2458 independent reflections1 standard reflections every 60 min
1723 reflections with I > 2σ(I) intensity decay: none
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.124H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0634P)2 + 0.119P] where P = (Fo2 + 2Fc2)/3
2458 reflections(Δ/σ)max < 0.001
158 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.8285 (2)0.02907 (18)0.22875 (18)0.0442 (5)
O10.74464 (17)−0.04122 (16)0.23414 (15)0.0664 (5)
C20.81692 (16)0.09021 (17)0.09920 (15)0.0334 (4)
C30.96176 (17)0.10037 (18)0.12975 (15)0.0366 (4)
H30.99440.00690.12590.044*
O30.97820 (14)0.18725 (14)0.04063 (13)0.0470 (4)
H3a1.054 (3)0.162 (2)0.040 (2)0.074 (7)*
C41.02716 (19)0.1504 (2)0.26969 (17)0.0479 (5)
H4a1.01110.24900.27480.058*
H4b1.12130.13430.30990.058*
C50.9623 (2)0.0629 (2)0.33416 (17)0.0540 (5)
H5a1.0122−0.02160.37060.065*
H5b0.95630.11500.40290.065*
N21a0.75682 (14)0.22639 (14)0.08142 (13)0.0355 (3)
N22a0.72893 (16)0.27771 (16)0.17473 (15)0.0467 (4)
C23a0.6800 (2)0.4024 (2)0.1306 (2)0.0574 (6)
H23a0.65140.46390.17440.069*
C24a0.6759 (2)0.4315 (2)0.0121 (2)0.0547 (5)
H24a0.64520.5123−0.03690.066*
C25a0.72630 (18)0.31694 (19)−0.01749 (18)0.0442 (4)
H25a0.73760.3034−0.09120.053*
N21b0.73500 (14)0.00404 (14)−0.01115 (13)0.0368 (3)
N22b0.78713 (15)−0.10826 (15)−0.04212 (15)0.0428 (4)
C23b0.6833 (2)−0.1781 (2)−0.1270 (2)0.0532 (5)
H23b0.6885−0.2604−0.16680.064*
C24b0.5666 (2)−0.1145 (2)−0.1493 (2)0.0550 (5)
H24b0.4817−0.1443−0.20440.066*
C25b0.60277 (18)0.0009 (2)−0.07340 (18)0.0481 (5)
H25b0.54640.0660−0.06580.058*
U11U22U33U12U13U23
C10.0694 (12)0.0345 (9)0.0456 (10)0.0067 (9)0.0409 (10)0.0039 (8)
O10.0940 (12)0.0587 (9)0.0741 (10)−0.0051 (8)0.0623 (10)0.0126 (8)
C20.0427 (9)0.0331 (8)0.0326 (8)0.0013 (7)0.0242 (7)−0.0004 (7)
C30.0436 (9)0.0355 (9)0.0368 (9)0.0037 (7)0.0238 (8)0.0013 (7)
O30.0464 (7)0.0543 (8)0.0542 (8)0.0036 (6)0.0350 (7)0.0106 (6)
C40.0529 (12)0.0481 (11)0.0393 (10)0.0043 (9)0.0180 (9)−0.0022 (8)
C50.0798 (15)0.0514 (12)0.0347 (10)0.0157 (11)0.0297 (10)0.0068 (9)
N21a0.0444 (8)0.0353 (8)0.0371 (7)0.0049 (6)0.0275 (6)0.0014 (6)
N22a0.0625 (10)0.0443 (9)0.0483 (9)0.0085 (7)0.0385 (8)−0.0037 (7)
C23a0.0696 (14)0.0443 (11)0.0681 (14)0.0122 (10)0.0400 (12)−0.0082 (10)
C24a0.0587 (13)0.0420 (11)0.0646 (13)0.0100 (9)0.0292 (11)0.0103 (10)
C25a0.0496 (10)0.0450 (10)0.0440 (10)0.0053 (8)0.0266 (9)0.0084 (8)
N21b0.0420 (8)0.0385 (8)0.0399 (8)0.0002 (6)0.0273 (7)−0.0042 (6)
N22b0.0503 (9)0.0394 (8)0.0510 (9)0.0012 (7)0.0338 (8)−0.0067 (7)
C23b0.0663 (13)0.0465 (11)0.0574 (12)−0.0122 (10)0.0373 (11)−0.0137 (9)
C24b0.0500 (11)0.0651 (13)0.0543 (11)−0.0165 (10)0.0279 (10)−0.0114 (10)
C25b0.0417 (10)0.0581 (12)0.0534 (11)−0.0016 (9)0.0293 (9)−0.0052 (10)
N21a—C25a1.351 (2)C4—C51.523 (3)
N21a—N22a1.3531 (19)C4—H4a0.9700
N21a—C21.446 (2)C4—H4b0.9700
N22a—C23a1.321 (2)C5—C11.493 (3)
C23a—C24a1.382 (3)C5—H5a0.9700
C23a—H23a0.9300C5—H5b0.9700
C24a—C25a1.356 (3)C1—O11.197 (2)
C24a—H24a0.9300N21b—C25b1.345 (2)
C25a—H25a0.9300N21b—N22b1.3568 (18)
C2—N21b1.449 (2)N22b—C23b1.325 (2)
C2—C31.530 (2)C23b—C24b1.380 (3)
C2—C11.561 (2)C23b—H23b0.9300
C3—O31.406 (2)C24b—C25b1.356 (3)
C3—C41.521 (2)C24b—H24b0.9300
C3—H30.9800C25b—H25b0.9300
O3—H3a0.90 (3)
C25a—N21a—N22a112.41 (14)C3—C4—H4a111.0
C25a—N21a—C2128.53 (14)C5—C4—H4a111.0
N22a—N21a—C2119.03 (13)C3—C4—H4b111.0
C23a—N22a—N21a103.46 (15)C5—C4—H4b111.0
N22a—C23a—C24a112.56 (17)H4a—C4—H4b109.0
N22a—C23a—H23a123.7C1—C5—C4105.35 (14)
C24a—C23a—H23a123.7C1—C5—H5a110.7
C25a—C24a—C23a105.26 (17)C4—C5—H5a110.7
C25a—C24a—H24a127.4C1—C5—H5b110.7
C23a—C24a—H24a127.4C4—C5—H5b110.7
N21a—C25a—C24a106.31 (16)H5a—C5—H5b108.8
N21a—C25a—H25a126.8O1—C1—C5128.69 (18)
C24a—C25a—H25a126.8O1—C1—C2123.02 (18)
N21a—C2—N21b108.45 (13)C5—C1—C2108.04 (15)
N21a—C2—C3111.65 (13)C25b—N21b—N22b111.25 (14)
N21b—C2—C3115.74 (13)C25b—N21b—C2126.87 (14)
N21a—C2—C1107.57 (12)N22b—N21b—C2120.12 (14)
N21b—C2—C1111.79 (14)C23b—N22b—N21b104.18 (15)
C3—C2—C1101.26 (13)N22b—C23b—C24b112.13 (18)
O3—C3—C4115.56 (15)N22b—C23b—H23b123.9
O3—C3—C2111.26 (14)C24b—C23b—H23b123.9
C4—C3—C2102.63 (13)C25b—C24b—C23b104.93 (18)
O3—C3—H3109.0C25b—C24b—H24b127.5
C4—C3—H3109.0C23b—C24b—H24b127.5
C2—C3—H3109.0N21b—C25b—C24b107.48 (17)
C3—O3—H3a107.6 (15)N21b—C25b—H25b126.3
C3—C4—C5103.75 (15)C24b—C25b—H25b126.3
C25a—N21a—N22a—C23a0.1 (2)C4—C5—C1—O1177.50 (19)
C2—N21a—N22a—C23a178.13 (16)C4—C5—C1—C23.11 (19)
N21a—N22a—C23a—C24a0.1 (2)N21a—C2—C1—O190.9 (2)
N22a—C23a—C24a—C25a−0.3 (3)N21b—C2—C1—O1−28.1 (2)
N22a—N21a—C25a—C24a−0.3 (2)C3—C2—C1—O1−151.91 (18)
C2—N21a—C25a—C24a−178.07 (16)N21a—C2—C1—C5−94.37 (16)
C23a—C24a—C25a—N21a0.4 (2)N21b—C2—C1—C5146.68 (15)
C25a—N21a—C2—N21b−58.2 (2)C3—C2—C1—C522.86 (17)
N22a—N21a—C2—N21b124.20 (15)N21a—C2—N21b—C25b−38.9 (2)
C25a—N21a—C2—C370.5 (2)C3—C2—N21b—C25b−165.28 (16)
N22a—N21a—C2—C3−107.11 (16)C1—C2—N21b—C25b79.5 (2)
C25a—N21a—C2—C1−179.25 (17)N21a—C2—N21b—N22b157.55 (13)
N22a—N21a—C2—C13.1 (2)C3—C2—N21b—N22b31.2 (2)
N21a—C2—C3—O3−49.79 (17)C1—C2—N21b—N22b−84.02 (17)
N21b—C2—C3—O374.91 (18)C25b—N21b—N22b—C23b1.36 (19)
C1—C2—C3—O3−164.01 (13)C2—N21b—N22b—C23b167.26 (15)
N21a—C2—C3—C474.37 (16)N21b—N22b—C23b—C24b−0.9 (2)
N21b—C2—C3—C4−160.92 (14)N22b—C23b—C24b—C25b0.2 (2)
C1—C2—C3—C4−39.84 (16)N22b—N21b—C25b—C24b−1.3 (2)
O3—C3—C4—C5164.39 (15)C2—N21b—C25b—C24b−166.00 (16)
C2—C3—C4—C543.13 (18)C23b—C24b—C25b—N21b0.6 (2)
C3—C4—C5—C1−28.36 (19)
D—H···AD—HH···AD···AD—H···A
O3—H3a···N22bi0.90 (3)1.88 (3)2.781 (2)179 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3a⋯N22bi0.90 (3)1.88 (3)2.781 (2)179 (2)

Symmetry code: (i) .

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