| Literature DB >> 22412673 |
Michaela Pojarová, Michal Dušek, Zdeňka Sedláková, Emanuel Makrlík.
Abstract
In the title compound, C(25)H(22)Cl(2)N(2)O(4)·CH(3)OH, the macrocyclic mol-ecule adopts a slightly distorted C(2)-symmetric conformation. The macrocyclic mol-ecules are linked via N-H⋯O hydrogen bonds between the amide groups into chains extending along the [010] direction. The methanol mol-ecules bridge these chains via N-H⋯O and O-H⋯O hydrogen bonds with the formation of a two-dimensional polymeric structure parallel to (001). The methanol mol-ecule is disordered over two positions with the occupancy ratio of 9:1. The disorder of the solvent molecule is caused by weak intermolecular C-H⋯Cl hydrogen bonding.Entities:
Year: 2012 PMID: 22412673 PMCID: PMC3297870 DOI: 10.1107/S1600536812007052
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C25H22Cl2N2O4·CH4O | |
| Melting point = 316–318 K | |
| Orthorhombic, | Cu |
| Hall symbol: -P 2ac 2ab | Cell parameters from 6415 reflections |
| θ = 3.3–67.1° | |
| µ = 2.78 mm−1 | |
| Prism, colourless | |
| 0.30 × 0.11 × 0.08 mm | |
| Oxford Diffraction Xcalibur A Gemini Ultra diffractometer | 4099 independent reflections |
| Radiation source: Enhance Ultra (Cu) X-ray Source | 3364 reflections with |
| Mirror monochromator | |
| Detector resolution: 10.3784 pixels mm-1 | θmax = 65.1°, θmin = 3.3° |
| ω scan | |
| Absorption correction: multi-scan ( | |
| 42959 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 4099 reflections | (Δ/σ)max = 0.002 |
| 326 parameters | Δρmax = 0.20 e Å−3 |
| 4 restraints | Δρmin = −0.21 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| Cl1 | 1.11069 (2) | 0.02416 (7) | 0.213524 (18) | 0.03911 (14) | |
| Cl2 | 0.84287 (2) | −0.21013 (7) | 0.147714 (18) | 0.03856 (14) | |
| O1 | 0.70542 (6) | 0.38705 (18) | 0.40933 (5) | 0.0367 (3) | |
| O2 | 0.80594 (5) | 0.19883 (17) | 0.32491 (5) | 0.0305 (3) | |
| O3 | 0.96571 (6) | −0.16498 (18) | 0.38954 (5) | 0.0322 (3) | |
| O4 | 0.98144 (6) | −0.1787 (2) | 0.52219 (5) | 0.0406 (4) | |
| N1 | 0.80833 (7) | 0.38887 (19) | 0.40351 (6) | 0.0277 (3) | |
| H1N2 | 0.8870 | −0.1436 | 0.4391 | 0.033* | |
| N2 | 0.89913 (7) | −0.14110 (19) | 0.47251 (5) | 0.0262 (3) | |
| H1N1 | 0.8439 | 0.3425 | 0.3862 | 0.031* | |
| C1 | 0.81828 (9) | 0.4614 (2) | 0.45255 (7) | 0.0315 (4) | |
| H1A | 0.7853 | 0.5366 | 0.4597 | 0.038* | |
| H1B | 0.8557 | 0.5239 | 0.4517 | 0.038* | |
| C2 | 0.75257 (8) | 0.3497 (2) | 0.38745 (7) | 0.0266 (4) | |
| C3 | 0.74788 (8) | 0.2590 (2) | 0.33841 (7) | 0.0265 (4) | |
| H3A | 0.7195 | 0.1690 | 0.3417 | 0.032* | |
| H3B | 0.7329 | 0.3318 | 0.3125 | 0.032* | |
| C4 | 0.81162 (8) | 0.1097 (2) | 0.28177 (6) | 0.0240 (4) | |
| C5 | 0.76696 (8) | 0.0977 (2) | 0.24538 (7) | 0.0267 (4) | |
| H5 | 0.7306 | 0.1547 | 0.2489 | 0.032* | |
| C6 | 0.77682 (8) | 0.0000 (2) | 0.20357 (7) | 0.0289 (4) | |
| H6 | 0.7472 | −0.0093 | 0.1788 | 0.035* | |
| C7 | 0.83113 (8) | −0.0828 (2) | 0.19935 (7) | 0.0276 (4) | |
| C8 | 0.87611 (8) | −0.0703 (2) | 0.23554 (7) | 0.0255 (4) | |
| H8 | 0.9124 | −0.1273 | 0.2317 | 0.031* | |
| C9 | 0.86718 (8) | 0.0266 (2) | 0.27735 (7) | 0.0242 (4) | |
| C10 | 0.91217 (8) | 0.0476 (3) | 0.31990 (7) | 0.0338 (5) | |
| H10A | 0.9167 | 0.1636 | 0.3263 | 0.041* | |
| H10B | 0.8947 | −0.0011 | 0.3498 | 0.041* | |
| C11 | 0.97467 (8) | −0.0239 (2) | 0.31231 (7) | 0.0283 (4) | |
| C12 | 1.00962 (8) | 0.0216 (2) | 0.27119 (7) | 0.0296 (4) | |
| H12 | 0.9936 | 0.0927 | 0.2474 | 0.035* | |
| C13 | 1.06813 (8) | −0.0383 (2) | 0.26540 (7) | 0.0298 (4) | |
| C14 | 1.09288 (8) | −0.1440 (3) | 0.29985 (7) | 0.0317 (4) | |
| H14 | 1.1320 | −0.1849 | 0.2953 | 0.038* | |
| C15 | 1.05893 (9) | −0.1890 (3) | 0.34134 (7) | 0.0313 (4) | |
| H15 | 1.0753 | −0.2604 | 0.3649 | 0.038* | |
| C16 | 1.00041 (8) | −0.1277 (2) | 0.34793 (7) | 0.0275 (4) | |
| C17 | 0.99810 (9) | −0.1964 (3) | 0.43499 (7) | 0.0345 (5) | |
| H17A | 1.0330 | −0.1243 | 0.4370 | 0.041* | |
| H17B | 1.0128 | −0.3081 | 0.4348 | 0.041* | |
| C18 | 0.95804 (9) | −0.1705 (2) | 0.48030 (7) | 0.0291 (4) | |
| C19 | 0.85686 (9) | −0.1157 (2) | 0.51386 (7) | 0.0287 (4) | |
| H19A | 0.8741 | −0.1632 | 0.5440 | 0.034* | |
| H19B | 0.8194 | −0.1736 | 0.5066 | 0.034* | |
| C20 | 0.84194 (8) | 0.0621 (2) | 0.52404 (7) | 0.0261 (4) | |
| C21 | 0.82821 (8) | 0.1118 (3) | 0.57256 (7) | 0.0307 (4) | |
| H21 | 0.8297 | 0.0368 | 0.5987 | 0.037* | |
| C22 | 0.81235 (9) | 0.2726 (3) | 0.58206 (7) | 0.0350 (5) | |
| H22 | 0.8037 | 0.3052 | 0.6147 | 0.042* | |
| C23 | 0.80922 (8) | 0.3850 (3) | 0.54350 (8) | 0.0321 (4) | |
| H23 | 0.7985 | 0.4927 | 0.5503 | 0.039* | |
| C24 | 0.82213 (8) | 0.3373 (2) | 0.49450 (7) | 0.0271 (4) | |
| C25 | 0.83856 (8) | 0.1760 (2) | 0.48543 (7) | 0.0264 (4) | |
| H25 | 0.8475 | 0.1435 | 0.4528 | 0.032* | |
| O5 | 0.94522 (11) | 0.3414 (4) | 0.40875 (11) | 0.0418 (7) | 0.90 |
| H1O5 | 0.9545 | 0.2931 | 0.4346 | 0.050* | 0.90 |
| C26 | 0.99892 (15) | 0.3791 (5) | 0.38117 (9) | 0.0415 (7) | 0.90 |
| H26A | 0.9904 | 0.4652 | 0.3578 | 0.050* | 0.90 |
| H26B | 1.0123 | 0.2838 | 0.3633 | 0.050* | 0.90 |
| H26C | 1.0303 | 0.4138 | 0.4039 | 0.050* | 0.90 |
| O5A | 0.9587 (14) | 0.374 (5) | 0.4090 (12) | 0.0418 (7) | 0.10 |
| H2O5 | 0.9634 | 0.2905 | 0.4254 | 0.050* | 0.10 |
| C26A | 0.9961 (18) | 0.367 (6) | 0.3651 (11) | 0.0415 (7) | 0.10 |
| H26D | 0.9888 | 0.4625 | 0.3449 | 0.050* | 0.10 |
| H26E | 0.9863 | 0.2711 | 0.3462 | 0.050* | 0.10 |
| H26F | 1.0381 | 0.3642 | 0.3748 | 0.050* | 0.10 |
| Cl1 | 0.0270 (2) | 0.0524 (3) | 0.0380 (3) | −0.0081 (2) | 0.00832 (19) | −0.0091 (2) |
| Cl2 | 0.0337 (3) | 0.0480 (3) | 0.0339 (3) | −0.0041 (2) | 0.00026 (19) | −0.0116 (2) |
| O1 | 0.0250 (7) | 0.0434 (9) | 0.0417 (8) | 0.0047 (6) | 0.0079 (6) | −0.0067 (7) |
| O2 | 0.0183 (6) | 0.0437 (8) | 0.0294 (7) | 0.0064 (6) | 0.0010 (5) | −0.0059 (6) |
| O3 | 0.0221 (6) | 0.0499 (9) | 0.0245 (6) | 0.0021 (6) | −0.0020 (5) | −0.0013 (6) |
| O4 | 0.0343 (8) | 0.0595 (10) | 0.0279 (7) | 0.0096 (7) | −0.0066 (6) | 0.0019 (7) |
| N1 | 0.0236 (8) | 0.0284 (8) | 0.0311 (8) | 0.0029 (7) | 0.0014 (6) | 0.0015 (7) |
| N2 | 0.0254 (8) | 0.0302 (9) | 0.0230 (7) | 0.0009 (7) | −0.0009 (6) | −0.0013 (6) |
| C1 | 0.0290 (10) | 0.0283 (10) | 0.0372 (11) | 0.0017 (8) | −0.0014 (8) | −0.0044 (8) |
| C2 | 0.0242 (9) | 0.0240 (10) | 0.0315 (9) | 0.0042 (8) | 0.0035 (8) | 0.0059 (8) |
| C3 | 0.0185 (8) | 0.0298 (10) | 0.0313 (9) | 0.0057 (8) | 0.0024 (7) | 0.0050 (8) |
| C4 | 0.0216 (9) | 0.0264 (9) | 0.0241 (9) | −0.0010 (8) | 0.0028 (7) | 0.0051 (7) |
| C5 | 0.0184 (9) | 0.0314 (10) | 0.0302 (10) | 0.0002 (8) | 0.0002 (7) | 0.0092 (8) |
| C6 | 0.0232 (9) | 0.0359 (11) | 0.0276 (10) | −0.0049 (8) | −0.0033 (7) | 0.0064 (8) |
| C7 | 0.0261 (9) | 0.0306 (10) | 0.0260 (9) | −0.0053 (8) | 0.0020 (7) | 0.0013 (8) |
| C8 | 0.0208 (9) | 0.0279 (10) | 0.0277 (9) | −0.0002 (8) | 0.0029 (7) | 0.0043 (8) |
| C9 | 0.0194 (8) | 0.0284 (10) | 0.0247 (9) | −0.0012 (8) | 0.0021 (7) | 0.0058 (7) |
| C10 | 0.0218 (9) | 0.0515 (13) | 0.0280 (10) | 0.0097 (9) | −0.0010 (8) | −0.0040 (9) |
| C11 | 0.0196 (9) | 0.0398 (11) | 0.0256 (9) | 0.0026 (8) | −0.0024 (7) | −0.0082 (8) |
| C12 | 0.0233 (9) | 0.0364 (11) | 0.0290 (9) | 0.0024 (8) | −0.0018 (8) | −0.0056 (8) |
| C13 | 0.0212 (9) | 0.0383 (11) | 0.0300 (10) | −0.0042 (8) | 0.0019 (7) | −0.0109 (8) |
| C14 | 0.0186 (9) | 0.0406 (12) | 0.0359 (10) | 0.0022 (8) | −0.0019 (8) | −0.0131 (9) |
| C15 | 0.0248 (10) | 0.0374 (11) | 0.0317 (10) | 0.0055 (8) | −0.0048 (8) | −0.0076 (8) |
| C16 | 0.0207 (9) | 0.0356 (11) | 0.0262 (9) | −0.0002 (8) | −0.0017 (7) | −0.0074 (8) |
| C17 | 0.0294 (10) | 0.0463 (13) | 0.0278 (10) | 0.0091 (9) | −0.0037 (8) | −0.0014 (9) |
| C18 | 0.0291 (10) | 0.0313 (11) | 0.0271 (10) | 0.0028 (8) | −0.0027 (8) | 0.0004 (8) |
| C19 | 0.0264 (9) | 0.0326 (11) | 0.0270 (9) | −0.0017 (8) | 0.0027 (7) | 0.0020 (8) |
| C20 | 0.0177 (8) | 0.0335 (10) | 0.0271 (9) | −0.0020 (8) | −0.0015 (7) | −0.0035 (8) |
| C21 | 0.0236 (9) | 0.0434 (12) | 0.0251 (9) | −0.0008 (9) | −0.0002 (7) | 0.0004 (8) |
| C22 | 0.0286 (10) | 0.0494 (13) | 0.0271 (10) | 0.0025 (9) | 0.0009 (8) | −0.0109 (9) |
| C23 | 0.0235 (9) | 0.0346 (11) | 0.0383 (11) | 0.0034 (9) | −0.0017 (8) | −0.0098 (9) |
| C24 | 0.0176 (9) | 0.0334 (11) | 0.0301 (10) | −0.0008 (8) | −0.0022 (7) | −0.0048 (8) |
| C25 | 0.0215 (9) | 0.0334 (11) | 0.0245 (9) | −0.0007 (8) | 0.0011 (7) | −0.0047 (8) |
| O5 | 0.0243 (15) | 0.0620 (19) | 0.0390 (8) | 0.0036 (10) | −0.0010 (10) | 0.0116 (10) |
| C26 | 0.0367 (13) | 0.0549 (17) | 0.0330 (17) | −0.0057 (12) | −0.0024 (16) | 0.0023 (19) |
| O5A | 0.0243 (15) | 0.0620 (19) | 0.0390 (8) | 0.0036 (10) | −0.0010 (10) | 0.0116 (10) |
| C26A | 0.0367 (13) | 0.0549 (17) | 0.0330 (17) | −0.0057 (12) | −0.0024 (16) | 0.0023 (19) |
| Cl1—C13 | 1.7470 (19) | C11—C16 | 1.395 (3) |
| Cl2—C7 | 1.7466 (19) | C12—C13 | 1.386 (3) |
| O1—C2 | 1.229 (2) | C12—H12 | 0.9300 |
| O2—C4 | 1.368 (2) | C13—C14 | 1.375 (3) |
| O2—C3 | 1.415 (2) | C14—C15 | 1.385 (3) |
| O3—C16 | 1.381 (2) | C14—H14 | 0.9300 |
| O3—C17 | 1.430 (2) | C15—C16 | 1.392 (3) |
| O4—C18 | 1.232 (2) | C15—H15 | 0.9300 |
| N1—C2 | 1.338 (2) | C17—C18 | 1.511 (3) |
| N1—C1 | 1.453 (2) | C17—H17A | 0.9700 |
| N1—H1N1 | 0.9840 | C17—H17B | 0.9700 |
| N2—C18 | 1.334 (2) | C19—C20 | 1.517 (3) |
| N2—C19 | 1.458 (2) | C19—H19A | 0.9700 |
| N2—H1N2 | 0.9295 | C19—H19B | 0.9700 |
| C1—C24 | 1.514 (3) | C20—C21 | 1.390 (3) |
| C1—H1A | 0.9700 | C20—C25 | 1.391 (3) |
| C1—H1B | 0.9700 | C21—C22 | 1.385 (3) |
| C2—C3 | 1.507 (3) | C21—H21 | 0.9300 |
| C3—H3A | 0.9700 | C22—C23 | 1.382 (3) |
| C3—H3B | 0.9700 | C22—H22 | 0.9300 |
| C4—C5 | 1.384 (3) | C23—C24 | 1.394 (3) |
| C4—C9 | 1.404 (3) | C23—H23 | 0.9300 |
| C5—C6 | 1.389 (3) | C24—C25 | 1.391 (3) |
| C5—H5 | 0.9300 | C25—H25 | 0.9300 |
| C6—C7 | 1.378 (3) | O5—C26 | 1.425 (3) |
| C6—H6 | 0.9300 | O5—H1O5 | 0.8200 |
| C7—C8 | 1.386 (3) | C26—H26A | 0.9600 |
| C8—C9 | 1.383 (3) | C26—H26B | 0.9600 |
| C8—H8 | 0.9300 | C26—H26C | 0.9600 |
| C9—C10 | 1.516 (3) | O5A—C26A | 1.430 (19) |
| C10—C11 | 1.508 (3) | O5A—H2O5 | 0.8200 |
| C10—H10A | 0.9700 | C26A—H26D | 0.9600 |
| C10—H10B | 0.9700 | C26A—H26E | 0.9600 |
| C11—C12 | 1.390 (3) | C26A—H26F | 0.9600 |
| C4—O2—C3 | 118.82 (14) | C14—C13—C12 | 121.06 (18) |
| C16—O3—C17 | 116.49 (14) | C14—C13—Cl1 | 120.10 (14) |
| C2—N1—C1 | 121.63 (16) | C12—C13—Cl1 | 118.83 (16) |
| C2—N1—H1N1 | 119.0 | C13—C14—C15 | 119.22 (17) |
| C1—N1—H1N1 | 117.4 | C13—C14—H14 | 120.4 |
| C18—N2—C19 | 121.82 (15) | C15—C14—H14 | 120.4 |
| C18—N2—H1N2 | 115.1 | C14—C15—C16 | 120.21 (19) |
| C19—N2—H1N2 | 123.0 | C14—C15—H15 | 119.9 |
| N1—C1—C24 | 113.56 (16) | C16—C15—H15 | 119.9 |
| N1—C1—H1A | 108.9 | O3—C16—C15 | 122.18 (17) |
| C24—C1—H1A | 108.9 | O3—C16—C11 | 117.25 (16) |
| N1—C1—H1B | 108.9 | C15—C16—C11 | 120.58 (18) |
| C24—C1—H1B | 108.9 | O3—C17—C18 | 111.27 (15) |
| H1A—C1—H1B | 107.7 | O3—C17—H17A | 109.4 |
| O1—C2—N1 | 124.17 (18) | C18—C17—H17A | 109.4 |
| O1—C2—C3 | 118.49 (17) | O3—C17—H17B | 109.4 |
| N1—C2—C3 | 117.30 (16) | C18—C17—H17B | 109.4 |
| O2—C3—C2 | 109.29 (15) | H17A—C17—H17B | 108.0 |
| O2—C3—H3A | 109.8 | O4—C18—N2 | 123.83 (18) |
| C2—C3—H3A | 109.8 | O4—C18—C17 | 118.33 (17) |
| O2—C3—H3B | 109.8 | N2—C18—C17 | 117.84 (16) |
| C2—C3—H3B | 109.8 | N2—C19—C20 | 114.22 (15) |
| H3A—C3—H3B | 108.3 | N2—C19—H19A | 108.7 |
| O2—C4—C5 | 124.25 (16) | C20—C19—H19A | 108.7 |
| O2—C4—C9 | 114.12 (15) | N2—C19—H19B | 108.7 |
| C5—C4—C9 | 121.62 (17) | C20—C19—H19B | 108.7 |
| C4—C5—C6 | 119.53 (17) | H19A—C19—H19B | 107.6 |
| C4—C5—H5 | 120.2 | C21—C20—C25 | 118.80 (18) |
| C6—C5—H5 | 120.2 | C21—C20—C19 | 119.64 (17) |
| C7—C6—C5 | 118.96 (17) | C25—C20—C19 | 121.47 (16) |
| C7—C6—H6 | 120.5 | C22—C21—C20 | 120.21 (19) |
| C5—C6—H6 | 120.5 | C22—C21—H21 | 119.9 |
| C6—C7—C8 | 121.69 (18) | C20—C21—H21 | 119.9 |
| C6—C7—Cl2 | 119.10 (14) | C23—C22—C21 | 120.62 (18) |
| C8—C7—Cl2 | 119.19 (15) | C23—C22—H22 | 119.7 |
| C9—C8—C7 | 120.19 (17) | C21—C22—H22 | 119.7 |
| C9—C8—H8 | 119.9 | C22—C23—C24 | 120.08 (19) |
| C7—C8—H8 | 119.9 | C22—C23—H23 | 120.0 |
| C8—C9—C4 | 118.01 (16) | C24—C23—H23 | 120.0 |
| C8—C9—C10 | 125.23 (16) | C25—C24—C23 | 118.84 (18) |
| C4—C9—C10 | 116.75 (16) | C25—C24—C1 | 121.56 (17) |
| C11—C10—C9 | 116.76 (16) | C23—C24—C1 | 119.60 (18) |
| C11—C10—H10A | 108.1 | C24—C25—C20 | 121.43 (17) |
| C9—C10—H10A | 108.1 | C24—C25—H25 | 119.3 |
| C11—C10—H10B | 108.1 | C20—C25—H25 | 119.3 |
| C9—C10—H10B | 108.1 | C26—O5—H1O5 | 109.5 |
| H10A—C10—H10B | 107.3 | C26A—O5A—H2O5 | 109.5 |
| C12—C11—C16 | 118.45 (17) | O5A—C26A—H26D | 109.5 |
| C12—C11—C10 | 120.39 (18) | O5A—C26A—H26E | 109.5 |
| C16—C11—C10 | 121.00 (17) | H26D—C26A—H26E | 109.5 |
| C13—C12—C11 | 120.43 (19) | O5A—C26A—H26F | 109.5 |
| C13—C12—H12 | 119.8 | H26D—C26A—H26F | 109.5 |
| C11—C12—H12 | 119.8 | H26E—C26A—H26F | 109.5 |
| H··· | ||||
| N1—H1 | 0.98 | 2.31 | 3.039 (3) | 130 |
| N2—H1 | 0.93 | 2.20 | 2.860 (2) | 128 |
| O5—H1 | 0.82 | 2.05 | 2.789 (3) | 150 |
| C26 | 0.96 | 2.74 | 3.616 (3) | 149 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1N1⋯O5 | 0.98 | 2.31 | 3.039 (3) | 130 |
| N2—H1N2⋯O1i | 0.93 | 2.20 | 2.860 (2) | 128 |
| O5—H1O5⋯O4ii | 0.82 | 2.05 | 2.789 (3) | 150 |
| C26 | 0.96 | 2.74 | 3.616 (3) | 149 |
Symmetry codes: (i) ; (ii) ; (iii) .