Literature DB >> 22412673

10,16-Dichloro-6,20-dioxa-3,23-diaza-tetra-cyclo-[23.3.1.0.0]nona-cosa-1(29),7,9,11,14(19),15,17,25,27-nona-ene-4,22-dione methanol monosolvate.

Michaela Pojarová, Michal Dušek, Zdeňka Sedláková, Emanuel Makrlík.   

Abstract

In the title compound, C(25)H(22)Cl(2)N(2)O(4)·CH(3)OH, the macrocyclic mol-ecule adopts a slightly distorted C(2)-symmetric conformation. The macrocyclic mol-ecules are linked via N-H⋯O hydrogen bonds between the n class="Chemical">amide groups into chains extending along the [010] direction. The methanol mol-ecules bridge these chains via N-H⋯O and O-H⋯O hydrogen bonds with the formation of a two-dimensional polymeric structure parallel to (001). The methanol mol-ecule is disordered over two positions with the occupancy ratio of 9:1. The disorder of the solvent molecule is caused by weak intermolecular C-H⋯Cl hydrogen bonding.

Entities:  

Year:  2012        PMID: 22412673      PMCID: PMC3297870          DOI: 10.1107/S1600536812007052

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For application of macrocycles, see: Hayvali & Hayvali (2005 ▶); Kleinpeter et al. (1997 ▶); Jaiyu et al. (2007 ▶); Christensen et al. (1997 ▶); Alexander (1995 ▶). For the synthetic procedure, see: Ertul et al. (2009 ▶).

Experimental

Crystal data

C25H22Cl2N2O4·CH4O M = 517.39 Orthorhombic, a = 21.9905 (3) Å b = 8.1864 (1) Å c = 26.6760 (3) Å V = 4802.29 (10) Å3 Z = 8 Cu Kα radiation μ = 2.78 mm−1 T = 120 K 0.30 × 0.11 × 0.08 mm

Data collection

Oxford Diffraction Xcalibur A Gemini Ultra diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.826, T max = 1.000 42959 measured reflections 4099 independent reflections 3364 reflections with I > 2σ(I) R int = 0.070

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.082 S = 1.03 4099 reflections 326 parameters 4 restraints H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.21 e Å−3 Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶) and ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812007052/gk2457sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812007052/gk2457Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812007052/gk2457Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H22Cl2N2O4·CH4ODx = 1.431 Mg m3
Mr = 517.39Melting point = 316–318 K
Orthorhombic, PbcaCu Kα radiation, λ = 1.5418 Å
Hall symbol: -P 2ac 2abCell parameters from 6415 reflections
a = 21.9905 (3) Åθ = 3.3–67.1°
b = 8.1864 (1) ŵ = 2.78 mm1
c = 26.6760 (3) ÅT = 120 K
V = 4802.29 (10) Å3Prism, colourless
Z = 80.30 × 0.11 × 0.08 mm
F(000) = 2160
Oxford Diffraction Xcalibur A Gemini Ultra diffractometer4099 independent reflections
Radiation source: Enhance Ultra (Cu) X-ray Source3364 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.070
Detector resolution: 10.3784 pixels mm-1θmax = 65.1°, θmin = 3.3°
ω scanh = −22→25
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010)k = −9→9
Tmin = 0.826, Tmax = 1.000l = −29→31
42959 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.082H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0358P)2 + 2.1383P] where P = (Fo2 + 2Fc2)/3
4099 reflections(Δ/σ)max = 0.002
326 parametersΔρmax = 0.20 e Å3
4 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. Positions of disordered groups were found from electron density maps. The disordered fragments were then placed in appropriate positions, and all distances between neighbouring atoms were fixed. Site occupancies were refined for the different parts with the same thermal parameters for same atoms in various fragments. At the end of the refinement, site occupancies were fixed at values 0.90 and 0.10 and hydrogen atoms were placed into calculated positions. All hydrogen atoms could be found from maps of difference electron density, but those, attached to carbon atoms, were placed into calculated positions. The distance between N and H atoms were restrained to 1.00 Å with σ=0.02. The isotropic temperature parameters of hydrogen atoms were calculated as 1.2*Ueq of the parent atom.
xyzUiso*/UeqOcc. (<1)
Cl11.11069 (2)0.02416 (7)0.213524 (18)0.03911 (14)
Cl20.84287 (2)−0.21013 (7)0.147714 (18)0.03856 (14)
O10.70542 (6)0.38705 (18)0.40933 (5)0.0367 (3)
O20.80594 (5)0.19883 (17)0.32491 (5)0.0305 (3)
O30.96571 (6)−0.16498 (18)0.38954 (5)0.0322 (3)
O40.98144 (6)−0.1787 (2)0.52219 (5)0.0406 (4)
N10.80833 (7)0.38887 (19)0.40351 (6)0.0277 (3)
H1N20.8870−0.14360.43910.033*
N20.89913 (7)−0.14110 (19)0.47251 (5)0.0262 (3)
H1N10.84390.34250.38620.031*
C10.81828 (9)0.4614 (2)0.45255 (7)0.0315 (4)
H1A0.78530.53660.45970.038*
H1B0.85570.52390.45170.038*
C20.75257 (8)0.3497 (2)0.38745 (7)0.0266 (4)
C30.74788 (8)0.2590 (2)0.33841 (7)0.0265 (4)
H3A0.71950.16900.34170.032*
H3B0.73290.33180.31250.032*
C40.81162 (8)0.1097 (2)0.28177 (6)0.0240 (4)
C50.76696 (8)0.0977 (2)0.24538 (7)0.0267 (4)
H50.73060.15470.24890.032*
C60.77682 (8)0.0000 (2)0.20357 (7)0.0289 (4)
H60.7472−0.00930.17880.035*
C70.83113 (8)−0.0828 (2)0.19935 (7)0.0276 (4)
C80.87611 (8)−0.0703 (2)0.23554 (7)0.0255 (4)
H80.9124−0.12730.23170.031*
C90.86718 (8)0.0266 (2)0.27735 (7)0.0242 (4)
C100.91217 (8)0.0476 (3)0.31990 (7)0.0338 (5)
H10A0.91670.16360.32630.041*
H10B0.8947−0.00110.34980.041*
C110.97467 (8)−0.0239 (2)0.31231 (7)0.0283 (4)
C121.00962 (8)0.0216 (2)0.27119 (7)0.0296 (4)
H120.99360.09270.24740.035*
C131.06813 (8)−0.0383 (2)0.26540 (7)0.0298 (4)
C141.09288 (8)−0.1440 (3)0.29985 (7)0.0317 (4)
H141.1320−0.18490.29530.038*
C151.05893 (9)−0.1890 (3)0.34134 (7)0.0313 (4)
H151.0753−0.26040.36490.038*
C161.00041 (8)−0.1277 (2)0.34793 (7)0.0275 (4)
C170.99810 (9)−0.1964 (3)0.43499 (7)0.0345 (5)
H17A1.0330−0.12430.43700.041*
H17B1.0128−0.30810.43480.041*
C180.95804 (9)−0.1705 (2)0.48030 (7)0.0291 (4)
C190.85686 (9)−0.1157 (2)0.51386 (7)0.0287 (4)
H19A0.8741−0.16320.54400.034*
H19B0.8194−0.17360.50660.034*
C200.84194 (8)0.0621 (2)0.52404 (7)0.0261 (4)
C210.82821 (8)0.1118 (3)0.57256 (7)0.0307 (4)
H210.82970.03680.59870.037*
C220.81235 (9)0.2726 (3)0.58206 (7)0.0350 (5)
H220.80370.30520.61470.042*
C230.80922 (8)0.3850 (3)0.54350 (8)0.0321 (4)
H230.79850.49270.55030.039*
C240.82213 (8)0.3373 (2)0.49450 (7)0.0271 (4)
C250.83856 (8)0.1760 (2)0.48543 (7)0.0264 (4)
H250.84750.14350.45280.032*
O50.94522 (11)0.3414 (4)0.40875 (11)0.0418 (7)0.90
H1O50.95450.29310.43460.050*0.90
C260.99892 (15)0.3791 (5)0.38117 (9)0.0415 (7)0.90
H26A0.99040.46520.35780.050*0.90
H26B1.01230.28380.36330.050*0.90
H26C1.03030.41380.40390.050*0.90
O5A0.9587 (14)0.374 (5)0.4090 (12)0.0418 (7)0.10
H2O50.96340.29050.42540.050*0.10
C26A0.9961 (18)0.367 (6)0.3651 (11)0.0415 (7)0.10
H26D0.98880.46250.34490.050*0.10
H26E0.98630.27110.34620.050*0.10
H26F1.03810.36420.37480.050*0.10
U11U22U33U12U13U23
Cl10.0270 (2)0.0524 (3)0.0380 (3)−0.0081 (2)0.00832 (19)−0.0091 (2)
Cl20.0337 (3)0.0480 (3)0.0339 (3)−0.0041 (2)0.00026 (19)−0.0116 (2)
O10.0250 (7)0.0434 (9)0.0417 (8)0.0047 (6)0.0079 (6)−0.0067 (7)
O20.0183 (6)0.0437 (8)0.0294 (7)0.0064 (6)0.0010 (5)−0.0059 (6)
O30.0221 (6)0.0499 (9)0.0245 (6)0.0021 (6)−0.0020 (5)−0.0013 (6)
O40.0343 (8)0.0595 (10)0.0279 (7)0.0096 (7)−0.0066 (6)0.0019 (7)
N10.0236 (8)0.0284 (8)0.0311 (8)0.0029 (7)0.0014 (6)0.0015 (7)
N20.0254 (8)0.0302 (9)0.0230 (7)0.0009 (7)−0.0009 (6)−0.0013 (6)
C10.0290 (10)0.0283 (10)0.0372 (11)0.0017 (8)−0.0014 (8)−0.0044 (8)
C20.0242 (9)0.0240 (10)0.0315 (9)0.0042 (8)0.0035 (8)0.0059 (8)
C30.0185 (8)0.0298 (10)0.0313 (9)0.0057 (8)0.0024 (7)0.0050 (8)
C40.0216 (9)0.0264 (9)0.0241 (9)−0.0010 (8)0.0028 (7)0.0051 (7)
C50.0184 (9)0.0314 (10)0.0302 (10)0.0002 (8)0.0002 (7)0.0092 (8)
C60.0232 (9)0.0359 (11)0.0276 (10)−0.0049 (8)−0.0033 (7)0.0064 (8)
C70.0261 (9)0.0306 (10)0.0260 (9)−0.0053 (8)0.0020 (7)0.0013 (8)
C80.0208 (9)0.0279 (10)0.0277 (9)−0.0002 (8)0.0029 (7)0.0043 (8)
C90.0194 (8)0.0284 (10)0.0247 (9)−0.0012 (8)0.0021 (7)0.0058 (7)
C100.0218 (9)0.0515 (13)0.0280 (10)0.0097 (9)−0.0010 (8)−0.0040 (9)
C110.0196 (9)0.0398 (11)0.0256 (9)0.0026 (8)−0.0024 (7)−0.0082 (8)
C120.0233 (9)0.0364 (11)0.0290 (9)0.0024 (8)−0.0018 (8)−0.0056 (8)
C130.0212 (9)0.0383 (11)0.0300 (10)−0.0042 (8)0.0019 (7)−0.0109 (8)
C140.0186 (9)0.0406 (12)0.0359 (10)0.0022 (8)−0.0019 (8)−0.0131 (9)
C150.0248 (10)0.0374 (11)0.0317 (10)0.0055 (8)−0.0048 (8)−0.0076 (8)
C160.0207 (9)0.0356 (11)0.0262 (9)−0.0002 (8)−0.0017 (7)−0.0074 (8)
C170.0294 (10)0.0463 (13)0.0278 (10)0.0091 (9)−0.0037 (8)−0.0014 (9)
C180.0291 (10)0.0313 (11)0.0271 (10)0.0028 (8)−0.0027 (8)0.0004 (8)
C190.0264 (9)0.0326 (11)0.0270 (9)−0.0017 (8)0.0027 (7)0.0020 (8)
C200.0177 (8)0.0335 (10)0.0271 (9)−0.0020 (8)−0.0015 (7)−0.0035 (8)
C210.0236 (9)0.0434 (12)0.0251 (9)−0.0008 (9)−0.0002 (7)0.0004 (8)
C220.0286 (10)0.0494 (13)0.0271 (10)0.0025 (9)0.0009 (8)−0.0109 (9)
C230.0235 (9)0.0346 (11)0.0383 (11)0.0034 (9)−0.0017 (8)−0.0098 (9)
C240.0176 (9)0.0334 (11)0.0301 (10)−0.0008 (8)−0.0022 (7)−0.0048 (8)
C250.0215 (9)0.0334 (11)0.0245 (9)−0.0007 (8)0.0011 (7)−0.0047 (8)
O50.0243 (15)0.0620 (19)0.0390 (8)0.0036 (10)−0.0010 (10)0.0116 (10)
C260.0367 (13)0.0549 (17)0.0330 (17)−0.0057 (12)−0.0024 (16)0.0023 (19)
O5A0.0243 (15)0.0620 (19)0.0390 (8)0.0036 (10)−0.0010 (10)0.0116 (10)
C26A0.0367 (13)0.0549 (17)0.0330 (17)−0.0057 (12)−0.0024 (16)0.0023 (19)
Cl1—C131.7470 (19)C11—C161.395 (3)
Cl2—C71.7466 (19)C12—C131.386 (3)
O1—C21.229 (2)C12—H120.9300
O2—C41.368 (2)C13—C141.375 (3)
O2—C31.415 (2)C14—C151.385 (3)
O3—C161.381 (2)C14—H140.9300
O3—C171.430 (2)C15—C161.392 (3)
O4—C181.232 (2)C15—H150.9300
N1—C21.338 (2)C17—C181.511 (3)
N1—C11.453 (2)C17—H17A0.9700
N1—H1N10.9840C17—H17B0.9700
N2—C181.334 (2)C19—C201.517 (3)
N2—C191.458 (2)C19—H19A0.9700
N2—H1N20.9295C19—H19B0.9700
C1—C241.514 (3)C20—C211.390 (3)
C1—H1A0.9700C20—C251.391 (3)
C1—H1B0.9700C21—C221.385 (3)
C2—C31.507 (3)C21—H210.9300
C3—H3A0.9700C22—C231.382 (3)
C3—H3B0.9700C22—H220.9300
C4—C51.384 (3)C23—C241.394 (3)
C4—C91.404 (3)C23—H230.9300
C5—C61.389 (3)C24—C251.391 (3)
C5—H50.9300C25—H250.9300
C6—C71.378 (3)O5—C261.425 (3)
C6—H60.9300O5—H1O50.8200
C7—C81.386 (3)C26—H26A0.9600
C8—C91.383 (3)C26—H26B0.9600
C8—H80.9300C26—H26C0.9600
C9—C101.516 (3)O5A—C26A1.430 (19)
C10—C111.508 (3)O5A—H2O50.8200
C10—H10A0.9700C26A—H26D0.9600
C10—H10B0.9700C26A—H26E0.9600
C11—C121.390 (3)C26A—H26F0.9600
C4—O2—C3118.82 (14)C14—C13—C12121.06 (18)
C16—O3—C17116.49 (14)C14—C13—Cl1120.10 (14)
C2—N1—C1121.63 (16)C12—C13—Cl1118.83 (16)
C2—N1—H1N1119.0C13—C14—C15119.22 (17)
C1—N1—H1N1117.4C13—C14—H14120.4
C18—N2—C19121.82 (15)C15—C14—H14120.4
C18—N2—H1N2115.1C14—C15—C16120.21 (19)
C19—N2—H1N2123.0C14—C15—H15119.9
N1—C1—C24113.56 (16)C16—C15—H15119.9
N1—C1—H1A108.9O3—C16—C15122.18 (17)
C24—C1—H1A108.9O3—C16—C11117.25 (16)
N1—C1—H1B108.9C15—C16—C11120.58 (18)
C24—C1—H1B108.9O3—C17—C18111.27 (15)
H1A—C1—H1B107.7O3—C17—H17A109.4
O1—C2—N1124.17 (18)C18—C17—H17A109.4
O1—C2—C3118.49 (17)O3—C17—H17B109.4
N1—C2—C3117.30 (16)C18—C17—H17B109.4
O2—C3—C2109.29 (15)H17A—C17—H17B108.0
O2—C3—H3A109.8O4—C18—N2123.83 (18)
C2—C3—H3A109.8O4—C18—C17118.33 (17)
O2—C3—H3B109.8N2—C18—C17117.84 (16)
C2—C3—H3B109.8N2—C19—C20114.22 (15)
H3A—C3—H3B108.3N2—C19—H19A108.7
O2—C4—C5124.25 (16)C20—C19—H19A108.7
O2—C4—C9114.12 (15)N2—C19—H19B108.7
C5—C4—C9121.62 (17)C20—C19—H19B108.7
C4—C5—C6119.53 (17)H19A—C19—H19B107.6
C4—C5—H5120.2C21—C20—C25118.80 (18)
C6—C5—H5120.2C21—C20—C19119.64 (17)
C7—C6—C5118.96 (17)C25—C20—C19121.47 (16)
C7—C6—H6120.5C22—C21—C20120.21 (19)
C5—C6—H6120.5C22—C21—H21119.9
C6—C7—C8121.69 (18)C20—C21—H21119.9
C6—C7—Cl2119.10 (14)C23—C22—C21120.62 (18)
C8—C7—Cl2119.19 (15)C23—C22—H22119.7
C9—C8—C7120.19 (17)C21—C22—H22119.7
C9—C8—H8119.9C22—C23—C24120.08 (19)
C7—C8—H8119.9C22—C23—H23120.0
C8—C9—C4118.01 (16)C24—C23—H23120.0
C8—C9—C10125.23 (16)C25—C24—C23118.84 (18)
C4—C9—C10116.75 (16)C25—C24—C1121.56 (17)
C11—C10—C9116.76 (16)C23—C24—C1119.60 (18)
C11—C10—H10A108.1C24—C25—C20121.43 (17)
C9—C10—H10A108.1C24—C25—H25119.3
C11—C10—H10B108.1C20—C25—H25119.3
C9—C10—H10B108.1C26—O5—H1O5109.5
H10A—C10—H10B107.3C26A—O5A—H2O5109.5
C12—C11—C16118.45 (17)O5A—C26A—H26D109.5
C12—C11—C10120.39 (18)O5A—C26A—H26E109.5
C16—C11—C10121.00 (17)H26D—C26A—H26E109.5
C13—C12—C11120.43 (19)O5A—C26A—H26F109.5
C13—C12—H12119.8H26D—C26A—H26F109.5
C11—C12—H12119.8H26E—C26A—H26F109.5
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O50.982.313.039 (3)130
N2—H1N2···O1i0.932.202.860 (2)128
O5—H1O5···O4ii0.822.052.789 (3)150
C26A—H26F···Cl2iii0.962.743.616 (3)149
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯O50.982.313.039 (3)130
N2—H1N2⋯O1i0.932.202.860 (2)128
O5—H1O5⋯O4ii0.822.052.789 (3)150
C26A—H26F⋯Cl2iii0.962.743.616 (3)149

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Tsalen- and Tsalpn-Based Nickel Complexes with Two Aldehyde Functionalities as Potential Synthons for Thiophenolate-Containing Di- and Polynucleating Acyclic and Macrocyclic Ligands.

Authors:  Aase Christensen; Holger S. Jensen; Vickie McKee; Christine J. McKenzie; Maria Munch
Journal:  Inorg Chem       Date:  1997-12-17       Impact factor: 5.165

  2 in total
  1 in total

1.  14-Eth-oxy-4,6,9-trimethyl-8,12-dioxa-4,6-diaza-tetra-cyclo-[8.8.0.0(2,7).0(13,18)]octa-deca-2(7),13,15,17-tetra-ene-3,5,11-trione.

Authors:  G Jagadeesan; D Kannan; M Bakthadoss; S Aravindhan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-01-23
  1 in total

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