Literature DB >> 22412643

5-({[(E)-Benzyl-idene-amino]-oxy}meth-yl)-1,3,4-thia-diazol-2-amine.

Weiyan Yin1, Zhi Wang, Zi-Wen Yang.   

Abstract

In the mol-ecule of the title compound, C(10)H(10)N(4)OS, the configuration about the C=N double bond is E. The dihedral angle between the thia-diazole and benzene rings is 81.1 (1)°. In the crystal, mol-ecules are linked by N-H⋯N and C-H⋯O hydrogen bonds to form a two-dimensional network parallel with the bc plane.

Entities:  

Year:  2012        PMID: 22412643      PMCID: PMC3295532          DOI: 10.1107/S1600536812003893

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of thia­diazol compounds, see: Cressier et al. (2009 ▶); Ferrari et al. (2011 ▶). For a related structure, see: Boechat et al. (2006 ▶). For reference structural data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C10H10N4OS M = 234.28 Monoclinic, a = 14.504 (4) Å b = 9.272 (3) Å c = 8.361 (3) Å β = 106.75 (1)° V = 1076.7 (6) Å3 Z = 4 Mo Kα radiation μ = 0.28 mm−1 T = 100 K 0.16 × 0.12 × 0.12 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.956, T max = 0.967 5840 measured reflections 1808 independent reflections 1707 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.110 S = 1.09 1808 reflections 145 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.61 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812003893/fy2038sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812003893/fy2038Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812003893/fy2038Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H10N4OSF(000) = 488
Mr = 234.28Dx = 1.445 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 7867 reflections
a = 14.504 (4) Åθ = 2.2–31.8°
b = 9.272 (3) ŵ = 0.28 mm1
c = 8.361 (3) ÅT = 100 K
β = 106.75 (1)°Block, colorless
V = 1076.7 (6) Å30.16 × 0.12 × 0.12 mm
Z = 4
Bruker SMART APEX CCD diffractometer1808 independent reflections
Radiation source: fine-focus sealed tube1707 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.034
φ and ω scansθmax = 25.0°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −17→15
Tmin = 0.956, Tmax = 0.967k = −11→10
5840 measured reflectionsl = −9→9
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.110H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.0274P)2 + 2.2787P] where P = (Fo2 + 2Fc2)/3
1808 reflections(Δ/σ)max = 0.001
145 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.61 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C1−0.01298 (17)0.3905 (3)0.3290 (3)0.0184 (5)
C2−0.03790 (18)0.4774 (3)0.1867 (3)0.0215 (6)
H20.01100.52340.15020.026*
C3−0.13385 (19)0.4967 (3)0.0985 (4)0.0252 (6)
H3−0.15070.55480.00070.030*
C4−0.20545 (19)0.4310 (3)0.1531 (4)0.0264 (6)
H4−0.27120.44410.09250.032*
C5−0.18121 (18)0.3468 (3)0.2954 (4)0.0253 (6)
H5−0.23040.30180.33200.030*
C6−0.08548 (18)0.3276 (3)0.3849 (3)0.0215 (6)
H6−0.06920.27160.48430.026*
C70.08712 (17)0.3580 (3)0.4188 (3)0.0196 (5)
H70.10400.33200.53350.024*
C80.30958 (17)0.3047 (3)0.3626 (3)0.0209 (6)
H8A0.27710.26310.25170.025*
H8B0.36070.23700.42220.025*
C90.35421 (16)0.4469 (3)0.3404 (3)0.0178 (5)
C120.42588 (16)0.6806 (3)0.3667 (3)0.0171 (5)
N10.15225 (14)0.3645 (2)0.3424 (3)0.0208 (5)
N20.39251 (14)0.4743 (2)0.2222 (3)0.0196 (5)
N30.43442 (15)0.6105 (2)0.2357 (3)0.0201 (5)
N40.45809 (15)0.8148 (2)0.4095 (3)0.0213 (5)
H4A0.48760.86240.34750.026*
H4B0.44980.85520.49950.026*
O10.24135 (12)0.3211 (2)0.4548 (2)0.0230 (4)
S10.36427 (4)0.58523 (7)0.48329 (8)0.0189 (2)
U11U22U33U12U13U23
C10.0195 (12)0.0160 (12)0.0206 (14)−0.0003 (9)0.0072 (10)−0.0032 (10)
C20.0232 (13)0.0183 (13)0.0249 (14)−0.0024 (10)0.0100 (11)−0.0010 (10)
C30.0291 (14)0.0167 (13)0.0267 (15)0.0039 (10)0.0029 (11)0.0012 (11)
C40.0184 (12)0.0258 (14)0.0328 (16)0.0029 (10)0.0040 (11)−0.0073 (12)
C50.0193 (12)0.0270 (14)0.0325 (16)−0.0021 (11)0.0122 (11)−0.0026 (12)
C60.0224 (12)0.0194 (13)0.0243 (14)0.0006 (10)0.0095 (11)0.0000 (10)
C70.0206 (12)0.0162 (12)0.0222 (14)−0.0008 (10)0.0064 (10)0.0007 (10)
C80.0168 (11)0.0216 (13)0.0260 (15)0.0008 (10)0.0090 (10)−0.0007 (10)
C90.0144 (11)0.0186 (12)0.0202 (13)0.0033 (9)0.0049 (10)0.0010 (10)
C120.0119 (10)0.0237 (13)0.0163 (13)0.0037 (9)0.0051 (9)0.0027 (10)
N10.0165 (10)0.0211 (11)0.0218 (12)−0.0007 (8)0.0007 (9)0.0007 (9)
N20.0180 (10)0.0227 (11)0.0190 (11)0.0005 (8)0.0067 (8)−0.0010 (9)
N30.0200 (10)0.0203 (11)0.0212 (12)0.0026 (8)0.0079 (9)0.0001 (9)
N40.0257 (11)0.0207 (11)0.0210 (12)−0.0044 (9)0.0122 (9)−0.0029 (9)
O10.0157 (8)0.0283 (10)0.0239 (10)0.0009 (7)0.0038 (7)0.0023 (8)
S10.0204 (3)0.0219 (3)0.0177 (4)−0.0020 (2)0.0106 (2)−0.0010 (2)
C1—C21.396 (4)C8—O11.426 (3)
C1—C61.396 (4)C8—C91.503 (3)
C1—C71.461 (3)C8—H8A0.9900
C2—C31.386 (4)C8—H8B0.9900
C2—H20.9500C9—N21.291 (3)
C3—C41.390 (4)C9—S11.730 (3)
C3—H30.9500C12—N31.309 (3)
C4—C51.381 (4)C12—N41.341 (3)
C4—H40.9500C12—S11.742 (2)
C5—C61.386 (4)N1—O11.419 (3)
C5—H50.9500N2—N31.392 (3)
C6—H60.9500N4—H4A0.8800
C7—N11.285 (3)N4—H4B0.8800
C7—H70.9500
C2—C1—C6119.5 (2)O1—C8—C9111.4 (2)
C2—C1—C7122.2 (2)O1—C8—H8A109.4
C6—C1—C7118.3 (2)C9—C8—H8A109.4
C3—C2—C1120.1 (2)O1—C8—H8B109.4
C3—C2—H2119.9C9—C8—H8B109.4
C1—C2—H2119.9H8A—C8—H8B108.0
C2—C3—C4120.0 (3)N2—C9—C8124.3 (2)
C2—C3—H3120.0N2—C9—S1114.39 (19)
C4—C3—H3120.0C8—C9—S1121.23 (19)
C5—C4—C3120.1 (2)N3—C12—N4125.0 (2)
C5—C4—H4119.9N3—C12—S1113.79 (19)
C3—C4—H4119.9N4—C12—S1121.15 (19)
C4—C5—C6120.3 (2)C7—N1—O1108.5 (2)
C4—C5—H5119.9C9—N2—N3113.0 (2)
C6—C5—H5119.9C12—N3—N2112.0 (2)
C5—C6—C1120.0 (3)C12—N4—H4A120.0
C5—C6—H6120.0C12—N4—H4B120.0
C1—C6—H6120.0H4A—N4—H4B120.0
N1—C7—C1119.9 (2)N1—O1—C8108.28 (19)
N1—C7—H7120.0C9—S1—C1286.84 (12)
C1—C7—H7120.0
C6—C1—C2—C3−2.3 (4)C1—C7—N1—O1−177.0 (2)
C7—C1—C2—C3175.2 (2)C8—C9—N2—N3−176.0 (2)
C1—C2—C3—C40.9 (4)S1—C9—N2—N30.3 (3)
C2—C3—C4—C50.1 (4)N4—C12—N3—N2−178.9 (2)
C3—C4—C5—C60.2 (4)S1—C12—N3—N2−0.6 (3)
C4—C5—C6—C1−1.6 (4)C9—N2—N3—C120.2 (3)
C2—C1—C6—C52.6 (4)C7—N1—O1—C8170.3 (2)
C7—C1—C6—C5−175.0 (2)C9—C8—O1—N183.4 (2)
C2—C1—C7—N1−24.1 (4)N2—C9—S1—C12−0.50 (19)
C6—C1—C7—N1153.4 (2)C8—C9—S1—C12175.9 (2)
O1—C8—C9—N2−156.5 (2)N3—C12—S1—C90.63 (19)
O1—C8—C9—S127.5 (3)N4—C12—S1—C9179.0 (2)
D—H···AD—HH···AD···AD—H···A
N4—H4A···N2i0.882.243.077 (3)159
N4—H4B···N3ii0.882.072.929 (3)164
C8—H8A···O1iii0.992.513.468 (3)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4A⋯N2i0.882.243.077 (3)159
N4—H4B⋯N3ii0.882.072.929 (3)164
C8—H8A⋯O1iii0.992.513.468 (3)163

Symmetry codes: (i) ; (ii) ; (iii) .

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Authors:  Damien Cressier; Caroline Prouillac; Pierre Hernandez; Christine Amourette; Michel Diserbo; Claude Lion; Ghassoub Rima
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4.  Virtual screening identification of nonfolate compounds, including a CNS drug, as antiparasitic agents inhibiting pteridine reductase.

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