Literature DB >> 22412625

1,3,5-Tris(pyridin-3-yl)-2,4-diaza-penta-1,4-diene.

Claudia M Quiroa-Montalván1, Gerardo Aguirre, Miguel Parra-Hake.   

Abstract

In the solid state, the structure of the title compound, C(18)H(15)N(5), is stabilized by weak C-H⋯N interactions. Mol-ecules are arranged in layers parallel to the bc plane forming an inter-esting supra-molecular structure.

Entities:  

Year:  2012        PMID: 22412625      PMCID: PMC3295514          DOI: 10.1107/S1600536812005909

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For coordination polymers and supra­molecular structures, see: Itoh et al. (2005 ▶); Albrechet (2001 ▶); Leininger et al. (2000 ▶). For potential applications in catalysis, gas storage, chirality, optics, magnetism, nanotechnology and luminescence, see: James (2003 ▶); Kitagawa et al. (2004 ▶); Masaoka et al. (2001 ▶); Rarig et al. (2002 ▶); Yaghi et al. (2003 ▶); Wang et al. (2009 ▶). For the preparation of this class of compound, see: Larter et al. (1998 ▶); Lozinskaya et al. (2003 ▶); Bessonov et al. (2005 ▶); Fernandes et al. (2007 ▶).

Experimental

Crystal data

C18H15N5 M = 301.35 Monoclinic, a = 5.7174 (11) Å b = 8.0934 (10) Å c = 16.972 (4) Å β = 99.690 (18)° V = 774.1 (3) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 298 K 0.42 × 0.18 × 0.12 mm

Data collection

Bruker P4 diffractometer 3235 measured reflections 2874 independent reflections 1159 reflections with I > 2σ(I) R int = 0.061 3 standard reflections every 97 reflections intensity decay: 11.5%

Refinement

R[F 2 > 2σ(F 2)] = 0.070 wR(F 2) = 0.135 S = 0.98 2874 reflections 209 parameters 2 restraints H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.17 e Å−3 Data collection: XSCANS (Siemens, 1996 ▶); cell refinement: XSCANS; data reduction: XSCANS; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXS97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812005909/rk2325sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812005909/rk2325Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812005909/rk2325Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H15N5F(000) = 316
Mr = 301.35Dx = 1.293 Mg m3
Monoclinic, PcMelting point = 388–390 K
Hall symbol: P -2ycMo Kα radiation, λ = 0.71073 Å
a = 5.7174 (11) ÅCell parameters from 33 reflections
b = 8.0934 (10) Åθ = 4.7–11.6°
c = 16.972 (4) ŵ = 0.08 mm1
β = 99.690 (18)°T = 298 K
V = 774.1 (3) Å3Neele, colourless
Z = 20.42 × 0.18 × 0.12 mm
Bruker P4 diffractometerRint = 0.061
Radiation source: fine-focus sealed tubeθmax = 30.0°, θmin = 2.4°
Graphite monochromatorh = −1→8
2θ/ω–scansk = −1→11
3235 measured reflectionsl = −23→23
2874 independent reflections3 standard reflections every 97 reflections
1159 reflections with I > 2σ(I) intensity decay: 11.5%
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.070w = 1/[σ2(Fo2) + (0.0352P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.135(Δ/σ)max < 0.001
S = 0.98Δρmax = 0.17 e Å3
2874 reflectionsΔρmin = −0.17 e Å3
209 parametersExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
2 restraintsExtinction coefficient: 0.019 (2)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983)
Secondary atom site location: difference Fourier map
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
N30.3294 (7)0.4546 (5)0.0999 (2)0.0434 (11)
C41.0463 (12)0.2145 (8)0.4651 (3)0.0578 (18)
H4A1.09470.16660.51500.069*
N20.6027 (8)0.4678 (5)0.2201 (2)0.0408 (11)
C31.1993 (11)0.2058 (7)0.4105 (3)0.0588 (18)
H3B1.34740.15610.42350.071*
C70.5371 (9)0.5446 (6)0.1421 (3)0.0413 (14)
H7A0.66890.53670.11200.050*
C80.3369 (10)0.4143 (6)0.0281 (3)0.0436 (14)
H8A0.46840.44400.00570.052*
C160.2483 (11)0.9366 (7)0.1982 (3)0.0486 (15)
H16A0.12650.97140.22430.058*
N4−0.0186 (9)0.2211 (7)−0.1527 (2)0.0604 (15)
C21.1242 (10)0.2739 (7)0.3358 (3)0.0481 (15)
H2B1.22220.27150.29730.058*
C130.1481 (10)0.2988 (7)−0.1022 (3)0.0497 (16)
H13A0.27750.3410−0.12230.060*
C140.4741 (10)0.7230 (6)0.1524 (3)0.0402 (13)
C10.9022 (9)0.3453 (7)0.3190 (3)0.0404 (14)
C12−0.1994 (11)0.1565 (7)−0.1222 (3)0.0587 (18)
H12A−0.31740.1006−0.15640.070*
C60.8136 (10)0.4183 (7)0.2402 (3)0.0443 (15)
H6A0.91720.42830.20370.053*
N10.8360 (8)0.2859 (7)0.4515 (2)0.0638 (16)
C90.1421 (10)0.3216 (7)−0.0208 (3)0.0411 (14)
C11−0.2194 (10)0.1688 (7)−0.0427 (3)0.0555 (17)
H11A−0.34650.1201−0.02380.067*
C10−0.0493 (10)0.2540 (7)0.0083 (3)0.0476 (15)
H10A−0.06250.26620.06190.057*
C150.2938 (10)0.7702 (7)0.1923 (3)0.0482 (15)
H15A0.20520.69190.21450.058*
C180.5982 (12)0.8483 (7)0.1210 (3)0.0558 (16)
H18A0.71960.81740.09380.067*
C50.7697 (10)0.3477 (7)0.3793 (3)0.0495 (15)
H5A0.62070.39690.36830.059*
C170.3808 (11)1.0503 (8)0.1661 (3)0.0627 (18)
H17A0.34741.16170.17180.075*
N50.5548 (11)1.0099 (6)0.1272 (3)0.0731 (18)
U11U22U33U12U13U23
N30.051 (3)0.040 (3)0.039 (2)0.001 (3)0.008 (2)−0.001 (2)
C40.063 (5)0.062 (5)0.042 (3)−0.010 (4)−0.008 (3)0.019 (3)
N20.050 (3)0.039 (3)0.033 (2)0.000 (3)0.005 (2)0.001 (2)
C30.046 (4)0.055 (4)0.069 (4)0.001 (4)−0.008 (3)0.007 (3)
C70.043 (4)0.044 (3)0.038 (3)0.002 (3)0.010 (3)0.002 (3)
C80.049 (4)0.041 (3)0.041 (3)−0.001 (3)0.010 (3)0.003 (3)
C160.060 (4)0.041 (4)0.049 (3)0.002 (4)0.019 (3)−0.006 (3)
N40.061 (4)0.073 (4)0.044 (3)0.011 (4)0.000 (3)−0.013 (3)
C20.042 (4)0.057 (4)0.046 (3)0.002 (4)0.010 (3)−0.006 (3)
C130.050 (4)0.060 (4)0.038 (3)0.014 (4)0.006 (3)0.000 (3)
C140.048 (4)0.040 (3)0.032 (3)0.006 (4)0.004 (3)0.004 (3)
C10.039 (4)0.043 (3)0.037 (3)−0.003 (3)0.002 (3)0.001 (3)
C120.059 (5)0.054 (4)0.057 (4)0.006 (4)−0.006 (3)−0.016 (3)
C60.050 (4)0.042 (3)0.043 (3)0.002 (3)0.012 (3)−0.005 (3)
N10.050 (4)0.089 (4)0.049 (3)−0.004 (4)−0.001 (3)0.015 (3)
C90.048 (4)0.037 (3)0.038 (3)0.009 (3)0.007 (3)−0.001 (3)
C110.051 (4)0.057 (4)0.058 (4)0.002 (4)0.009 (3)−0.009 (3)
C100.057 (4)0.047 (4)0.039 (3)0.008 (4)0.007 (3)−0.003 (3)
C150.056 (4)0.048 (4)0.042 (3)−0.017 (4)0.014 (3)−0.002 (3)
C180.058 (4)0.054 (4)0.061 (3)−0.001 (4)0.028 (3)−0.005 (3)
C50.041 (4)0.059 (4)0.048 (3)0.000 (4)0.007 (3)0.004 (3)
C170.089 (6)0.043 (4)0.061 (3)−0.001 (4)0.026 (4)−0.002 (3)
N50.101 (5)0.050 (4)0.080 (3)−0.001 (4)0.051 (4)0.010 (3)
N3—C81.269 (5)C13—C91.401 (6)
N3—C71.472 (6)C13—H13A0.9300
C4—N11.319 (7)C14—C151.378 (7)
C4—C31.380 (8)C14—C181.394 (7)
C4—H4A0.9300C1—C51.372 (7)
N2—C61.262 (6)C1—C61.473 (7)
N2—C71.454 (6)C12—C111.376 (7)
C3—C21.383 (7)C12—H12A0.9300
C3—H3B0.9300C6—H6A0.9300
C7—C141.506 (6)N1—C51.319 (6)
C7—H7A0.9800C9—C101.387 (7)
C8—C91.476 (7)C11—C101.374 (7)
C8—H8A0.9300C11—H11A0.9300
C16—C171.363 (7)C10—H10A0.9300
C16—C151.378 (7)C15—H15A0.9300
C16—H16A0.9300C18—N51.339 (7)
N4—C131.327 (7)C18—H18A0.9300
N4—C121.338 (8)C5—H5A0.9300
C2—C11.380 (7)C17—N51.324 (7)
C2—H2B0.9300C17—H17A0.9300
C8—N3—C7116.0 (4)C5—C1—C6121.5 (5)
N1—C4—C3124.5 (5)C2—C1—C6121.3 (5)
N1—C4—H4A117.7N4—C12—C11123.2 (6)
C3—C4—H4A117.7N4—C12—H12A118.4
C6—N2—C7118.0 (4)C11—C12—H12A118.4
C4—C3—C2117.5 (6)N2—C6—C1122.6 (5)
C4—C3—H3B121.2N2—C6—H6A118.7
C2—C3—H3B121.2C1—C6—H6A118.7
N2—C7—N3107.1 (4)C5—N1—C4116.1 (5)
N2—C7—C14109.5 (4)C10—C9—C13116.8 (5)
N3—C7—C14110.0 (4)C10—C9—C8124.5 (5)
N2—C7—H7A110.1C13—C9—C8118.7 (5)
N3—C7—H7A110.1C12—C11—C10119.2 (6)
C14—C7—H7A110.1C12—C11—H11A120.4
N3—C8—C9121.7 (5)C10—C11—H11A120.4
N3—C8—H8A119.1C11—C10—C9119.4 (5)
C9—C8—H8A119.1C11—C10—H10A120.3
C17—C16—C15120.4 (6)C9—C10—H10A120.3
C17—C16—H16A119.8C16—C15—C14118.2 (5)
C15—C16—H16A119.8C16—C15—H15A120.9
C13—N4—C12117.0 (5)C14—C15—H15A120.9
C1—C2—C3119.2 (5)N5—C18—C14124.5 (6)
C1—C2—H2B120.4N5—C18—H18A117.7
C3—C2—H2B120.4C14—C18—H18A117.7
N4—C13—C9124.4 (5)N1—C5—C1125.4 (6)
N4—C13—H13A117.8N1—C5—H5A117.3
C9—C13—H13A117.8C1—C5—H5A117.3
C15—C14—C18117.2 (5)N5—C17—C16123.2 (6)
C15—C14—C7122.4 (5)N5—C17—H17A118.4
C18—C14—C7120.3 (5)C16—C17—H17A118.4
C5—C1—C2117.2 (5)C17—N5—C18116.4 (6)
N1—C4—C3—C2−1.4 (9)N4—C13—C9—C101.6 (8)
C6—N2—C7—N3125.7 (5)N4—C13—C9—C8−178.4 (5)
C6—N2—C7—C14−115.1 (5)N3—C8—C9—C10−7.8 (8)
C8—N3—C7—N2−133.5 (5)N3—C8—C9—C13172.3 (5)
C8—N3—C7—C14107.6 (5)N4—C12—C11—C101.3 (9)
C7—N3—C8—C9179.1 (4)C12—C11—C10—C9−1.8 (8)
C4—C3—C2—C1−0.5 (8)C13—C9—C10—C110.4 (7)
C12—N4—C13—C9−2.2 (8)C8—C9—C10—C11−179.5 (5)
N2—C7—C14—C15−59.2 (6)C17—C16—C15—C14−0.7 (8)
N3—C7—C14—C1558.3 (6)C18—C14—C15—C160.1 (7)
N2—C7—C14—C18121.2 (5)C7—C14—C15—C16−179.6 (5)
N3—C7—C14—C18−121.4 (5)C15—C14—C18—N50.3 (9)
C3—C2—C1—C51.5 (8)C7—C14—C18—N5180.0 (6)
C3—C2—C1—C6−179.6 (5)C4—N1—C5—C1−1.1 (9)
C13—N4—C12—C110.6 (9)C2—C1—C5—N1−0.7 (9)
C7—N2—C6—C1177.3 (4)C6—C1—C5—N1−179.7 (6)
C5—C1—C6—N2−9.1 (8)C15—C16—C17—N50.9 (9)
C2—C1—C6—N2171.9 (6)C16—C17—N5—C18−0.5 (9)
C3—C4—N1—C52.2 (9)C14—C18—N5—C17−0.1 (9)
D—H···AD—HH···AD···AD—H···A
C18—H18A···N1i0.932.743.552 (7)146
C17—H17A···N3ii0.932.663.456 (7)144
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C18—H18A⋯N1i0.932.743.552 (7)146
C17—H17A⋯N3ii0.932.663.456 (7)144

Symmetry codes: (i) ; (ii) .

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