Literature DB >> 22412609

(E)-N-Butyl-3-(3,4-dihy-droxy-phen-yl)acryl-amide hemihydrate.

Yan Han1, Mi-Hua Hao.   

Abstract

In the title compound, C(13)H(17)NO(3)·0.5H(2)O, a new caffeic acid amide derivative, the solvent water mol-ecule lies on a twofold axis and the terminal ethyl group appears disordered with occupancy factors of 0.525 (6) and 0.475 (6). The benzene ring makes an angle of 17.3 (2)° with the C=C-C-O linker. The presence of an ethyl-enic spacer in the caffeic acid amide mol-ecule allows the formation of a conjugated system, strongly stabilized through π-electron delocalization. The C=C double bond in the linker is trans, similar to those previously reported in caffeic esters. The crystal is stabilized by O-H⋯O, N-H⋯O and C-H⋯O hydrogen bonds. The mol-ecules of the caffeic acid amide form a supermolecular planar structure through O-H⋯O hydrogen bonds between a hy-droxy group of one caffeic acid mol-ecule and a carbonyl O atom of another. These planes inter-act via C-H⋯O, O-H⋯O and N-H⋯O hydrogen bonds to form a three-dimensional network.

Entities:  

Year:  2012        PMID: 22412609      PMCID: PMC3295498          DOI: 10.1107/S1600536812005570

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For phenolic acid compounds used in biology and medicine, see: Altuğ et al. (2008 ▶). For synthetic work on the similar compounds, see: Bylov et al. (1999 ▶). For compounds with similar properties, see: Son & Lewis (2002 ▶); Menezes et al. (2001 ▶); Lee et al. (2005 ▶). For the structure analysis of a similar compound, see: Xia et al. (2008 ▶).

Experimental

Crystal data

C13H17NO3·0.5H2O M = 244.29 Monoclinic, a = 12.860 (7) Å b = 14.928 (8) Å c = 15.015 (11) Å β = 113.967 (6)° V = 2634 (3) Å3 Z = 8 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.28 × 0.22 × 0.19 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2008 ▶) T min = 0.977, T max = 0.983 7822 measured reflections 2581 independent reflections 1895 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.120 S = 1.04 2581 reflections 180 parameters H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812005570/bg2440sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812005570/bg2440Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812005570/bg2440Isup3.cdx Supplementary material file. DOI: 10.1107/S1600536812005570/bg2440Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H17NO3·0.5H2OF(000) = 1048
Mr = 244.29Dx = 1.232 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 2581 reflections
a = 12.860 (7) Åθ = 2.2–26.0°
b = 14.928 (8) ŵ = 0.09 mm1
c = 15.015 (11) ÅT = 296 K
β = 113.967 (6)°Block, yellow
V = 2634 (3) Å30.28 × 0.22 × 0.19 mm
Z = 8
Bruker SMART APEX CCD diffractometer2581 independent reflections
Radiation source: fine-focus sealed tube1895 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.025
φ and ω scansθmax = 26.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 2008)h = −15→15
Tmin = 0.977, Tmax = 0.983k = −18→15
7822 measured reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.120H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0532P)2 + 1.0544P] where P = (Fo2 + 2Fc2)/3
2581 reflections(Δ/σ)max < 0.001
180 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. The terminal C13 and methylene C12 have been treated disorderd.
xyzUiso*/UeqOcc. (<1)
O40.50000.79934 (9)0.75000.0471 (4)
H4A0.50470.76590.79730.057*0.50
H4B0.49530.76590.70270.057*0.50
N10.63571 (12)0.56741 (9)−0.01730 (9)0.0517 (4)
H1B0.68780.55870.04010.062*
O10.83466 (10)0.95089 (8)0.33417 (8)0.0653 (4)
H1A0.87850.90990.33750.098*
O20.67900 (9)1.07499 (8)0.30337 (8)0.0558 (3)
H2A0.62541.11010.28690.084*
O30.51295 (9)0.66595 (7)−0.12054 (7)0.0493 (3)
C10.53067 (15)0.93015 (13)0.09233 (13)0.0656 (6)
H10.46110.92680.03880.079*
C20.55145 (15)1.00043 (13)0.15684 (13)0.0638 (5)
H20.49621.04430.14590.077*
C30.65313 (13)1.00632 (11)0.23735 (11)0.0491 (4)
C40.73642 (13)0.94036 (11)0.25296 (11)0.0479 (4)
C50.71557 (13)0.87094 (11)0.18753 (11)0.0498 (4)
H50.77130.82770.19770.060*
C60.61164 (14)0.86440 (12)0.10578 (11)0.0522 (4)
C70.58305 (13)0.79218 (12)0.03400 (12)0.0520 (4)
H70.51890.8017−0.02330.062*
C80.63569 (13)0.71565 (11)0.03940 (11)0.0483 (4)
H80.70260.70380.09350.058*
C90.59066 (12)0.64825 (10)−0.03873 (10)0.0410 (4)
C100.60274 (16)0.49214 (12)−0.08466 (13)0.0608 (5)
H10A0.57500.5145−0.15090.073*
H10B0.54110.4598−0.07760.073*
C110.69973 (18)0.42951 (12)−0.06711 (14)0.0678 (5)
H11A0.73260.40950.00020.081*
H11B0.75850.4582−0.08190.081*
C120.6467 (8)0.3505 (6)−0.1365 (8)0.077 (2)0.525 (6)
H12A0.59090.3206−0.11880.093*0.525 (6)
H12B0.60880.3720−0.20290.093*0.525 (6)
C130.7411 (5)0.2857 (3)−0.1286 (4)0.097 (2)0.525 (6)
H13A0.79330.3148−0.15030.146*0.525 (6)
H13B0.70890.2342−0.16860.146*0.525 (6)
H13C0.78080.2673−0.06200.146*0.525 (6)
C12'0.6881 (7)0.3529 (8)−0.1425 (9)0.073 (2)0.475 (6)
H12C0.65530.3766−0.20830.088*0.475 (6)
H12D0.76240.3283−0.13050.088*0.475 (6)
C13'0.6133 (5)0.2818 (4)−0.1313 (4)0.098 (2)0.475 (6)
H13D0.64530.2599−0.06550.147*0.475 (6)
H13E0.60740.2334−0.17520.147*0.475 (6)
H13F0.53910.3061−0.14580.147*0.475 (6)
U11U22U33U12U13U23
O40.0635 (10)0.0324 (8)0.0410 (8)0.0000.0166 (7)0.000
N10.0572 (8)0.0449 (8)0.0358 (7)0.0049 (6)0.0011 (6)0.0003 (6)
O10.0455 (6)0.0695 (9)0.0532 (7)0.0148 (6)−0.0085 (5)−0.0213 (6)
O20.0493 (6)0.0568 (7)0.0478 (7)0.0099 (5)0.0059 (5)−0.0159 (5)
O30.0523 (6)0.0427 (7)0.0359 (6)−0.0050 (5)0.0005 (5)0.0034 (5)
C10.0442 (9)0.0799 (14)0.0484 (10)0.0186 (9)−0.0062 (8)−0.0193 (9)
C20.0478 (9)0.0726 (13)0.0521 (10)0.0236 (9)0.0006 (8)−0.0175 (9)
C30.0446 (8)0.0536 (10)0.0400 (8)0.0058 (7)0.0079 (7)−0.0120 (7)
C40.0378 (8)0.0562 (10)0.0373 (8)0.0061 (7)0.0024 (6)−0.0053 (7)
C50.0412 (8)0.0523 (10)0.0447 (9)0.0120 (7)0.0060 (7)−0.0071 (7)
C60.0457 (9)0.0580 (11)0.0399 (9)0.0090 (7)0.0042 (7)−0.0110 (8)
C70.0413 (8)0.0614 (11)0.0389 (8)0.0057 (7)0.0015 (7)−0.0087 (7)
C80.0424 (8)0.0521 (10)0.0372 (8)0.0028 (7)0.0025 (7)−0.0036 (7)
C90.0393 (7)0.0435 (9)0.0344 (8)−0.0038 (6)0.0092 (6)0.0020 (6)
C100.0609 (11)0.0474 (11)0.0547 (10)−0.0030 (8)0.0033 (9)−0.0042 (8)
C110.0828 (14)0.0510 (11)0.0556 (11)0.0111 (10)0.0138 (10)0.0000 (9)
C120.096 (6)0.048 (4)0.090 (4)−0.003 (4)0.040 (4)−0.018 (3)
C130.141 (5)0.061 (3)0.106 (4)0.029 (3)0.067 (3)−0.009 (2)
C12'0.076 (5)0.066 (5)0.089 (4)−0.003 (4)0.044 (4)−0.008 (3)
C13'0.113 (5)0.074 (4)0.109 (4)−0.002 (3)0.046 (4)0.001 (3)
O4—H4A0.8501C8—C91.474 (2)
O4—H4B0.8501C8—H80.9300
N1—C91.321 (2)C10—C111.494 (3)
N1—C101.455 (2)C10—H10A0.9700
N1—H1B0.8600C10—H10B0.9700
O1—C41.3624 (19)C11—C121.537 (9)
O1—H1A0.8200C11—C12'1.574 (11)
O2—C31.3699 (19)C11—H11A0.9700
O2—H2A0.8200C11—H11B0.9700
O3—C91.2571 (18)C12—C131.519 (10)
C1—C21.378 (2)C12—H12A0.9700
C1—C61.385 (2)C12—H12B0.9700
C1—H10.9300C13—H13A0.9600
C2—C31.377 (2)C13—H13B0.9600
C2—H20.9300C13—H13C0.9600
C3—C41.403 (2)C12'—C13'1.487 (11)
C4—C51.377 (2)C12'—H12C0.9700
C5—C61.403 (2)C12'—H12D0.9700
C5—H50.9300C13'—H13D0.9600
C6—C71.462 (2)C13'—H13E0.9600
C7—C81.314 (2)C13'—H13F0.9600
C7—H70.9300
H4A—O4—H4B108.0N1—C10—C11111.97 (15)
C9—N1—C10124.15 (14)N1—C10—H10A109.2
C9—N1—H1B117.9C11—C10—H10A109.2
C10—N1—H1B117.9N1—C10—H10B109.2
C4—O1—H1A109.5C11—C10—H10B109.2
C3—O2—H2A109.5H10A—C10—H10B107.9
C2—C1—C6121.15 (15)C10—C11—C12104.6 (4)
C2—C1—H1119.4C10—C11—C12'120.0 (4)
C6—C1—H1119.4C10—C11—H11A110.8
C3—C2—C1120.63 (15)C12—C11—H11A110.8
C3—C2—H2119.7C12'—C11—H11A113.6
C1—C2—H2119.7C10—C11—H11B110.8
O2—C3—C2123.23 (14)C12—C11—H11B110.8
O2—C3—C4117.38 (14)C12'—C11—H11B90.6
C2—C3—C4119.37 (15)H11A—C11—H11B108.9
O1—C4—C5124.49 (14)C13—C12—C11108.4 (6)
O1—C4—C3115.86 (14)C13—C12—H12A110.0
C5—C4—C3119.65 (14)C11—C12—H12A110.0
C4—C5—C6121.09 (14)C13—C12—H12B110.0
C4—C5—H5119.5C11—C12—H12B110.0
C6—C5—H5119.5H12A—C12—H12B108.4
C1—C6—C5118.09 (15)C13'—C12'—C11108.3 (6)
C1—C6—C7117.78 (15)C13'—C12'—H12C110.0
C5—C6—C7124.13 (15)C11—C12'—H12C110.0
C8—C7—C6128.82 (15)C13'—C12'—H12D110.0
C8—C7—H7115.6C11—C12'—H12D110.0
C6—C7—H7115.6H12C—C12'—H12D108.4
C7—C8—C9121.24 (15)C12'—C13'—H13D109.5
C7—C8—H8119.4C12'—C13'—H13E109.5
C9—C8—H8119.4H13D—C13'—H13E109.5
O3—C9—N1121.73 (14)C12'—C13'—H13F109.5
O3—C9—C8122.27 (14)H13D—C13'—H13F109.5
N1—C9—C8116.00 (13)H13E—C13'—H13F109.5
C6—C1—C2—C3−0.9 (3)C5—C6—C7—C812.7 (3)
C1—C2—C3—O2179.32 (18)C6—C7—C8—C9176.70 (16)
C1—C2—C3—C40.6 (3)C10—N1—C9—O31.0 (2)
O2—C3—C4—O11.2 (2)C10—N1—C9—C8−179.89 (15)
C2—C3—C4—O1179.99 (17)C7—C8—C9—O312.8 (2)
O2—C3—C4—C5−178.59 (15)C7—C8—C9—N1−166.28 (16)
C2—C3—C4—C50.2 (3)C9—N1—C10—C11148.87 (17)
O1—C4—C5—C6179.54 (17)N1—C10—C11—C12174.2 (4)
C3—C4—C5—C6−0.7 (3)N1—C10—C11—C12'−169.8 (4)
C2—C1—C6—C50.4 (3)C10—C11—C12—C13176.3 (5)
C2—C1—C6—C7−179.91 (18)C12'—C11—C12—C1337.4 (19)
C4—C5—C6—C10.4 (3)C10—C11—C12'—C13'−74.3 (8)
C4—C5—C6—C7−179.25 (17)C12—C11—C12'—C13'−27.1 (17)
C1—C6—C7—C8−166.91 (19)
D—H···AD—HH···AD···AD—H···A
O4—H4A···O3i0.851.912.7402 (19)165
O4—H4B···O3ii0.851.912.7402 (19)165
N1—H1B···O2iii0.862.293.129 (2)165
N1—H1B···O1iii0.862.583.143 (3)124
O1—H1A···O3iv0.821.942.7378 (19)162
O2—H2A···O4v0.822.002.8217 (18)177
C7—H7···O30.932.482.837 (2)103
C8—H8···O2iii0.932.553.330 (2)142
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H4A⋯O3i0.851.912.7402 (19)165
O4—H4B⋯O3ii0.851.912.7402 (19)165
N1—H1B⋯O2iii0.862.293.129 (2)165
N1—H1B⋯O1iii0.862.583.143 (3)124
O1—H1A⋯O3iv0.821.942.7378 (19)162
O2—H2A⋯O4v0.822.002.8217 (18)177
C7—H7⋯O30.932.482.837 (2)103
C8—H8⋯O2iii0.932.553.330 (2)142

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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