| Literature DB >> 22412609 |
Abstract
In the title compound, C(13)H(17)NO(3)·0.5H(2)O, a new caffeic acid amide derivative, the solvent water mol-ecule lies on a twofold axis and the terminal ethyl group appears disordered with occupancy factors of 0.525 (6) and 0.475 (6). The benzene ring makes an angle of 17.3 (2)° with the C=C-C-O linker. The presence of an ethyl-enic spacer in the caffeic acid amide mol-ecule allows the formation of a conjugated system, strongly stabilized through π-electron delocalization. The C=C double bond in the linker is trans, similar to those previously reported in caffeic esters. The crystal is stabilized by O-H⋯O, N-H⋯O and C-H⋯O hydrogen bonds. The mol-ecules of the caffeic acid amide form a supermolecular planar structure through O-H⋯O hydrogen bonds between a hy-droxy group of one caffeic acid mol-ecule and a carbonyl O atom of another. These planes inter-act via C-H⋯O, O-H⋯O and N-H⋯O hydrogen bonds to form a three-dimensional network.Entities:
Year: 2012 PMID: 22412609 PMCID: PMC3295498 DOI: 10.1107/S1600536812005570
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H17NO3·0.5H2O | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 2581 reflections |
| θ = 2.2–26.0° | |
| µ = 0.09 mm−1 | |
| β = 113.967 (6)° | Block, yellow |
| 0.28 × 0.22 × 0.19 mm | |
| Bruker SMART APEX CCD diffractometer | 2581 independent reflections |
| Radiation source: fine-focus sealed tube | 1895 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 26.0°, θmin = 2.2° |
| Absorption correction: multi-scan ( | |
| 7822 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2581 reflections | (Δ/σ)max < 0.001 |
| 180 parameters | Δρmax = 0.18 e Å−3 |
| 0 restraints | Δρmin = −0.21 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| O4 | 0.5000 | 0.79934 (9) | 0.7500 | 0.0471 (4) | |
| H4A | 0.5047 | 0.7659 | 0.7973 | 0.057* | 0.50 |
| H4B | 0.4953 | 0.7659 | 0.7027 | 0.057* | 0.50 |
| N1 | 0.63571 (12) | 0.56741 (9) | −0.01730 (9) | 0.0517 (4) | |
| H1B | 0.6878 | 0.5587 | 0.0401 | 0.062* | |
| O1 | 0.83466 (10) | 0.95089 (8) | 0.33417 (8) | 0.0653 (4) | |
| H1A | 0.8785 | 0.9099 | 0.3375 | 0.098* | |
| O2 | 0.67900 (9) | 1.07499 (8) | 0.30337 (8) | 0.0558 (3) | |
| H2A | 0.6254 | 1.1101 | 0.2869 | 0.084* | |
| O3 | 0.51295 (9) | 0.66595 (7) | −0.12054 (7) | 0.0493 (3) | |
| C1 | 0.53067 (15) | 0.93015 (13) | 0.09233 (13) | 0.0656 (6) | |
| H1 | 0.4611 | 0.9268 | 0.0388 | 0.079* | |
| C2 | 0.55145 (15) | 1.00043 (13) | 0.15684 (13) | 0.0638 (5) | |
| H2 | 0.4962 | 1.0443 | 0.1459 | 0.077* | |
| C3 | 0.65313 (13) | 1.00632 (11) | 0.23735 (11) | 0.0491 (4) | |
| C4 | 0.73642 (13) | 0.94036 (11) | 0.25296 (11) | 0.0479 (4) | |
| C5 | 0.71557 (13) | 0.87094 (11) | 0.18753 (11) | 0.0498 (4) | |
| H5 | 0.7713 | 0.8277 | 0.1977 | 0.060* | |
| C6 | 0.61164 (14) | 0.86440 (12) | 0.10578 (11) | 0.0522 (4) | |
| C7 | 0.58305 (13) | 0.79218 (12) | 0.03400 (12) | 0.0520 (4) | |
| H7 | 0.5189 | 0.8017 | −0.0233 | 0.062* | |
| C8 | 0.63569 (13) | 0.71565 (11) | 0.03940 (11) | 0.0483 (4) | |
| H8 | 0.7026 | 0.7038 | 0.0935 | 0.058* | |
| C9 | 0.59066 (12) | 0.64825 (10) | −0.03873 (10) | 0.0410 (4) | |
| C10 | 0.60274 (16) | 0.49214 (12) | −0.08466 (13) | 0.0608 (5) | |
| H10A | 0.5750 | 0.5145 | −0.1509 | 0.073* | |
| H10B | 0.5411 | 0.4598 | −0.0776 | 0.073* | |
| C11 | 0.69973 (18) | 0.42951 (12) | −0.06711 (14) | 0.0678 (5) | |
| H11A | 0.7326 | 0.4095 | 0.0002 | 0.081* | |
| H11B | 0.7585 | 0.4582 | −0.0819 | 0.081* | |
| C12 | 0.6467 (8) | 0.3505 (6) | −0.1365 (8) | 0.077 (2) | 0.525 (6) |
| H12A | 0.5909 | 0.3206 | −0.1188 | 0.093* | 0.525 (6) |
| H12B | 0.6088 | 0.3720 | −0.2029 | 0.093* | 0.525 (6) |
| C13 | 0.7411 (5) | 0.2857 (3) | −0.1286 (4) | 0.097 (2) | 0.525 (6) |
| H13A | 0.7933 | 0.3148 | −0.1503 | 0.146* | 0.525 (6) |
| H13B | 0.7089 | 0.2342 | −0.1686 | 0.146* | 0.525 (6) |
| H13C | 0.7808 | 0.2673 | −0.0620 | 0.146* | 0.525 (6) |
| C12' | 0.6881 (7) | 0.3529 (8) | −0.1425 (9) | 0.073 (2) | 0.475 (6) |
| H12C | 0.6553 | 0.3766 | −0.2083 | 0.088* | 0.475 (6) |
| H12D | 0.7624 | 0.3283 | −0.1305 | 0.088* | 0.475 (6) |
| C13' | 0.6133 (5) | 0.2818 (4) | −0.1313 (4) | 0.098 (2) | 0.475 (6) |
| H13D | 0.6453 | 0.2599 | −0.0655 | 0.147* | 0.475 (6) |
| H13E | 0.6074 | 0.2334 | −0.1752 | 0.147* | 0.475 (6) |
| H13F | 0.5391 | 0.3061 | −0.1458 | 0.147* | 0.475 (6) |
| O4 | 0.0635 (10) | 0.0324 (8) | 0.0410 (8) | 0.000 | 0.0166 (7) | 0.000 |
| N1 | 0.0572 (8) | 0.0449 (8) | 0.0358 (7) | 0.0049 (6) | 0.0011 (6) | 0.0003 (6) |
| O1 | 0.0455 (6) | 0.0695 (9) | 0.0532 (7) | 0.0148 (6) | −0.0085 (5) | −0.0213 (6) |
| O2 | 0.0493 (6) | 0.0568 (7) | 0.0478 (7) | 0.0099 (5) | 0.0059 (5) | −0.0159 (5) |
| O3 | 0.0523 (6) | 0.0427 (7) | 0.0359 (6) | −0.0050 (5) | 0.0005 (5) | 0.0034 (5) |
| C1 | 0.0442 (9) | 0.0799 (14) | 0.0484 (10) | 0.0186 (9) | −0.0062 (8) | −0.0193 (9) |
| C2 | 0.0478 (9) | 0.0726 (13) | 0.0521 (10) | 0.0236 (9) | 0.0006 (8) | −0.0175 (9) |
| C3 | 0.0446 (8) | 0.0536 (10) | 0.0400 (8) | 0.0058 (7) | 0.0079 (7) | −0.0120 (7) |
| C4 | 0.0378 (8) | 0.0562 (10) | 0.0373 (8) | 0.0061 (7) | 0.0024 (6) | −0.0053 (7) |
| C5 | 0.0412 (8) | 0.0523 (10) | 0.0447 (9) | 0.0120 (7) | 0.0060 (7) | −0.0071 (7) |
| C6 | 0.0457 (9) | 0.0580 (11) | 0.0399 (9) | 0.0090 (7) | 0.0042 (7) | −0.0110 (8) |
| C7 | 0.0413 (8) | 0.0614 (11) | 0.0389 (8) | 0.0057 (7) | 0.0015 (7) | −0.0087 (7) |
| C8 | 0.0424 (8) | 0.0521 (10) | 0.0372 (8) | 0.0028 (7) | 0.0025 (7) | −0.0036 (7) |
| C9 | 0.0393 (7) | 0.0435 (9) | 0.0344 (8) | −0.0038 (6) | 0.0092 (6) | 0.0020 (6) |
| C10 | 0.0609 (11) | 0.0474 (11) | 0.0547 (10) | −0.0030 (8) | 0.0033 (9) | −0.0042 (8) |
| C11 | 0.0828 (14) | 0.0510 (11) | 0.0556 (11) | 0.0111 (10) | 0.0138 (10) | 0.0000 (9) |
| C12 | 0.096 (6) | 0.048 (4) | 0.090 (4) | −0.003 (4) | 0.040 (4) | −0.018 (3) |
| C13 | 0.141 (5) | 0.061 (3) | 0.106 (4) | 0.029 (3) | 0.067 (3) | −0.009 (2) |
| C12' | 0.076 (5) | 0.066 (5) | 0.089 (4) | −0.003 (4) | 0.044 (4) | −0.008 (3) |
| C13' | 0.113 (5) | 0.074 (4) | 0.109 (4) | −0.002 (3) | 0.046 (4) | 0.001 (3) |
| O4—H4A | 0.8501 | C8—C9 | 1.474 (2) |
| O4—H4B | 0.8501 | C8—H8 | 0.9300 |
| N1—C9 | 1.321 (2) | C10—C11 | 1.494 (3) |
| N1—C10 | 1.455 (2) | C10—H10A | 0.9700 |
| N1—H1B | 0.8600 | C10—H10B | 0.9700 |
| O1—C4 | 1.3624 (19) | C11—C12 | 1.537 (9) |
| O1—H1A | 0.8200 | C11—C12' | 1.574 (11) |
| O2—C3 | 1.3699 (19) | C11—H11A | 0.9700 |
| O2—H2A | 0.8200 | C11—H11B | 0.9700 |
| O3—C9 | 1.2571 (18) | C12—C13 | 1.519 (10) |
| C1—C2 | 1.378 (2) | C12—H12A | 0.9700 |
| C1—C6 | 1.385 (2) | C12—H12B | 0.9700 |
| C1—H1 | 0.9300 | C13—H13A | 0.9600 |
| C2—C3 | 1.377 (2) | C13—H13B | 0.9600 |
| C2—H2 | 0.9300 | C13—H13C | 0.9600 |
| C3—C4 | 1.403 (2) | C12'—C13' | 1.487 (11) |
| C4—C5 | 1.377 (2) | C12'—H12C | 0.9700 |
| C5—C6 | 1.403 (2) | C12'—H12D | 0.9700 |
| C5—H5 | 0.9300 | C13'—H13D | 0.9600 |
| C6—C7 | 1.462 (2) | C13'—H13E | 0.9600 |
| C7—C8 | 1.314 (2) | C13'—H13F | 0.9600 |
| C7—H7 | 0.9300 | ||
| H4A—O4—H4B | 108.0 | N1—C10—C11 | 111.97 (15) |
| C9—N1—C10 | 124.15 (14) | N1—C10—H10A | 109.2 |
| C9—N1—H1B | 117.9 | C11—C10—H10A | 109.2 |
| C10—N1—H1B | 117.9 | N1—C10—H10B | 109.2 |
| C4—O1—H1A | 109.5 | C11—C10—H10B | 109.2 |
| C3—O2—H2A | 109.5 | H10A—C10—H10B | 107.9 |
| C2—C1—C6 | 121.15 (15) | C10—C11—C12 | 104.6 (4) |
| C2—C1—H1 | 119.4 | C10—C11—C12' | 120.0 (4) |
| C6—C1—H1 | 119.4 | C10—C11—H11A | 110.8 |
| C3—C2—C1 | 120.63 (15) | C12—C11—H11A | 110.8 |
| C3—C2—H2 | 119.7 | C12'—C11—H11A | 113.6 |
| C1—C2—H2 | 119.7 | C10—C11—H11B | 110.8 |
| O2—C3—C2 | 123.23 (14) | C12—C11—H11B | 110.8 |
| O2—C3—C4 | 117.38 (14) | C12'—C11—H11B | 90.6 |
| C2—C3—C4 | 119.37 (15) | H11A—C11—H11B | 108.9 |
| O1—C4—C5 | 124.49 (14) | C13—C12—C11 | 108.4 (6) |
| O1—C4—C3 | 115.86 (14) | C13—C12—H12A | 110.0 |
| C5—C4—C3 | 119.65 (14) | C11—C12—H12A | 110.0 |
| C4—C5—C6 | 121.09 (14) | C13—C12—H12B | 110.0 |
| C4—C5—H5 | 119.5 | C11—C12—H12B | 110.0 |
| C6—C5—H5 | 119.5 | H12A—C12—H12B | 108.4 |
| C1—C6—C5 | 118.09 (15) | C13'—C12'—C11 | 108.3 (6) |
| C1—C6—C7 | 117.78 (15) | C13'—C12'—H12C | 110.0 |
| C5—C6—C7 | 124.13 (15) | C11—C12'—H12C | 110.0 |
| C8—C7—C6 | 128.82 (15) | C13'—C12'—H12D | 110.0 |
| C8—C7—H7 | 115.6 | C11—C12'—H12D | 110.0 |
| C6—C7—H7 | 115.6 | H12C—C12'—H12D | 108.4 |
| C7—C8—C9 | 121.24 (15) | C12'—C13'—H13D | 109.5 |
| C7—C8—H8 | 119.4 | C12'—C13'—H13E | 109.5 |
| C9—C8—H8 | 119.4 | H13D—C13'—H13E | 109.5 |
| O3—C9—N1 | 121.73 (14) | C12'—C13'—H13F | 109.5 |
| O3—C9—C8 | 122.27 (14) | H13D—C13'—H13F | 109.5 |
| N1—C9—C8 | 116.00 (13) | H13E—C13'—H13F | 109.5 |
| C6—C1—C2—C3 | −0.9 (3) | C5—C6—C7—C8 | 12.7 (3) |
| C1—C2—C3—O2 | 179.32 (18) | C6—C7—C8—C9 | 176.70 (16) |
| C1—C2—C3—C4 | 0.6 (3) | C10—N1—C9—O3 | 1.0 (2) |
| O2—C3—C4—O1 | 1.2 (2) | C10—N1—C9—C8 | −179.89 (15) |
| C2—C3—C4—O1 | 179.99 (17) | C7—C8—C9—O3 | 12.8 (2) |
| O2—C3—C4—C5 | −178.59 (15) | C7—C8—C9—N1 | −166.28 (16) |
| C2—C3—C4—C5 | 0.2 (3) | C9—N1—C10—C11 | 148.87 (17) |
| O1—C4—C5—C6 | 179.54 (17) | N1—C10—C11—C12 | 174.2 (4) |
| C3—C4—C5—C6 | −0.7 (3) | N1—C10—C11—C12' | −169.8 (4) |
| C2—C1—C6—C5 | 0.4 (3) | C10—C11—C12—C13 | 176.3 (5) |
| C2—C1—C6—C7 | −179.91 (18) | C12'—C11—C12—C13 | 37.4 (19) |
| C4—C5—C6—C1 | 0.4 (3) | C10—C11—C12'—C13' | −74.3 (8) |
| C4—C5—C6—C7 | −179.25 (17) | C12—C11—C12'—C13' | −27.1 (17) |
| C1—C6—C7—C8 | −166.91 (19) |
| H··· | ||||
| O4—H4 | 0.85 | 1.91 | 2.7402 (19) | 165 |
| O4—H4 | 0.85 | 1.91 | 2.7402 (19) | 165 |
| N1—H1 | 0.86 | 2.29 | 3.129 (2) | 165 |
| N1—H1 | 0.86 | 2.58 | 3.143 (3) | 124 |
| O1—H1 | 0.82 | 1.94 | 2.7378 (19) | 162 |
| O2—H2 | 0.82 | 2.00 | 2.8217 (18) | 177 |
| C7—H7···O3 | 0.93 | 2.48 | 2.837 (2) | 103 |
| C8—H8···O2iii | 0.93 | 2.55 | 3.330 (2) | 142 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O4—H4 | 0.85 | 1.91 | 2.7402 (19) | 165 |
| O4—H4 | 0.85 | 1.91 | 2.7402 (19) | 165 |
| N1—H1 | 0.86 | 2.29 | 3.129 (2) | 165 |
| N1—H1 | 0.86 | 2.58 | 3.143 (3) | 124 |
| O1—H1 | 0.82 | 1.94 | 2.7378 (19) | 162 |
| O2—H2 | 0.82 | 2.00 | 2.8217 (18) | 177 |
| C7—H7⋯O3 | 0.93 | 2.48 | 2.837 (2) | 103 |
| C8—H8⋯O2iii | 0.93 | 2.55 | 3.330 (2) | 142 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .