Literature DB >> 22412594

2-Amino-3-(hy-droxy-meth-yl)pyridinium 2-benzoyl-benzoate monohydrate.

Hakkı Yasin Odabaşoğlu, Orhan Büyükgüngör, Osman Ozan Avinç, Mustafa Odabaşoğlu.   

Abstract

In the title hydrated salt, C(6)H(9)N(2)O(+)·C(14)H(9)O(3) (-)·H(2)O, the dihedral angle between the benzene rings of the 2-benzoyl-benzoate anion is 82.04 (14)°, while the angles between the aromatic ring of the pyridinium cation and each of the benzene rings of the anion are 4.42 (14) and 82.04 (14)°. In the crystal, mol-ecules are linked by N-H⋯O and O-H⋯O hydrogen bonds, generating a three-dimensional network with R(2) (2)(8), R(6) (6)(16) and R(4) (4)(6) motifs. The crystal packing is further stabilized by two π-π inter-actions, one between pyridinium rings, and another between the benzene benzoate and pyridinium rings of neighbouring mol-ecules, with centroid-to-centroid distances of 3.559 (2) and 3.606 (2) Å, respectively.

Entities:  

Year:  2012        PMID: 22412594      PMCID: PMC3295483          DOI: 10.1107/S1600536812005612

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Lehn (1990 ▶); Mrozek & Glowiak (2004 ▶); Yang et al. (1995 ▶); Goswami & Ghosh (1997 ▶); Goswami et al. (1998 ▶); Lah et al. (2001 ▶); Hong & Sun (2008 ▶). For related structures, see: Büyükgüngör & Odabaşoğlu (2002 ▶); Büyükgüngör et al. (2004 ▶); Odabaşoğlu & Büyükgüngör (2007 ▶, 2008 ▶); Odabaşoğlu et al. (2003b ▶,c ▶). For the synthesis of the title compound, see: Odabaşoğlu et al. (2003a ▶). For ring-motif details, see: Bernstein et al. (1995 ▶); Etter (1990 ▶).

Experimental

Crystal data

C6H9N2O+·C14H9O3 −·H2O M = 368.38 Monoclinic, a = 15.9259 (11) Å b = 8.4898 (4) Å c = 27.6362 (19) Å β = 93.468 (5)° V = 3729.8 (4) Å3 Z = 8 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.35 × 0.30 × 0.26 mm

Data collection

Stoe IPDS 2 diffractometer Absorption correction: integration (X-RED32; Stoe & Cie, 2002 ▶) T min = 0.967, T max = 0.976 9399 measured reflections 3523 independent reflections 1792 reflections with I > 2σ(I) R int = 0.117

Refinement

R[F 2 > 2σ(F 2)] = 0.062 wR(F 2) = 0.156 S = 0.95 3503 reflections 254 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.18 e Å−3 Δρmin = −0.21 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812005612/lr2047sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812005612/lr2047Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812005612/lr2047Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H9N2O+·C14H9O3·H2OF(000) = 1552
Mr = 368.38Dx = 1.312 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 8608 reflections
a = 15.9259 (11) Åθ = 1.5–26.1°
b = 8.4898 (4) ŵ = 0.10 mm1
c = 27.6362 (19) ÅT = 296 K
β = 93.468 (5)°Block, colourless
V = 3729.8 (4) Å30.35 × 0.30 × 0.26 mm
Z = 8
Stoe IPDS 2 diffractometer3523 independent reflections
Radiation source: fine-focus sealed tube1792 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.117
Detector resolution: 6.67 pixels mm-1θmax = 25.7°, θmin = 1.5°
ω–scan rotation methodh = −19→15
Absorption correction: integration (X-RED; Stoe & Cie, 2002)k = −9→10
Tmin = 0.967, Tmax = 0.976l = −33→33
9399 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.062H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.156w = 1/[σ2(Fo2) + (0.0625P)2] where P = (Fo2 + 2Fc2)/3
S = 0.95(Δ/σ)max < 0.001
3503 reflectionsΔρmax = 0.18 e Å3
254 parametersΔρmin = −0.21 e Å3
4 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0034 (5)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.40651 (19)0.3876 (3)0.66050 (9)0.0562 (7)
C20.4022 (2)0.2387 (4)0.68081 (10)0.0692 (9)
H20.35100.20010.69020.083*
C30.4738 (3)0.1478 (4)0.68716 (11)0.0788 (10)
H30.47050.04770.70060.095*
C40.5489 (2)0.2034 (4)0.67396 (11)0.0755 (10)
H40.59700.14200.67880.091*
C50.5540 (2)0.3510 (4)0.65331 (10)0.0653 (8)
H50.60580.38810.64430.078*
C60.48330 (18)0.4444 (3)0.64586 (8)0.0542 (7)
C70.4857 (2)0.5976 (4)0.61819 (9)0.0591 (8)
C80.32807 (19)0.4875 (4)0.65745 (9)0.0595 (8)
C90.32802 (18)0.6335 (4)0.68740 (9)0.0553 (7)
C100.27551 (19)0.7577 (4)0.67355 (11)0.0652 (8)
H100.24410.75320.64410.078*
C110.2694 (2)0.8874 (4)0.70280 (13)0.0767 (10)
H110.23420.97050.69310.092*
C120.3152 (2)0.8940 (5)0.74628 (13)0.0819 (10)
H120.31060.98120.76630.098*
C130.3682 (2)0.7722 (5)0.76063 (11)0.0818 (10)
H130.39900.77710.79030.098*
C140.3757 (2)0.6423 (4)0.73080 (10)0.0689 (9)
H140.41260.56130.74000.083*
O10.55266 (16)0.6753 (3)0.61989 (8)0.0810 (7)
O20.41975 (14)0.6353 (2)0.59401 (7)0.0673 (6)
O30.26539 (15)0.4449 (3)0.63399 (8)0.0821 (7)
C150.5523 (2)0.8106 (3)0.45397 (9)0.0591 (8)
C160.5503 (2)0.9647 (4)0.43366 (9)0.0580 (7)
C170.4025 (2)0.9701 (5)0.43705 (11)0.0734 (9)
H170.35231.02450.43070.088*
C180.4010 (2)0.8251 (5)0.45727 (12)0.0778 (10)
H180.35080.77900.46530.093*
C190.4776 (2)0.7474 (4)0.46559 (10)0.0730 (9)
H190.47760.64800.47970.088*
C200.6347 (2)0.7288 (4)0.46227 (11)0.0695 (9)
H20A0.66270.72660.43210.083*
H20B0.66980.78900.48550.083*
N10.47595 (17)1.0371 (3)0.42587 (8)0.0639 (7)
H10.47481.12970.41330.077*
N20.61927 (17)1.0410 (3)0.42175 (8)0.0683 (7)
H2A0.61521.13400.40940.082*
H2B0.66780.99730.42640.082*
O40.62787 (17)0.5725 (3)0.47963 (7)0.0814 (7)
H4A0.619 (3)0.514 (4)0.4545 (11)0.122*
O50.70194 (16)0.5481 (4)0.57409 (9)0.0921 (8)
H5A0.673 (3)0.560 (5)0.5473 (9)0.138*
H5B0.682 (3)0.614 (5)0.5941 (12)0.138*
U11U22U33U12U13U23
C10.0573 (19)0.0569 (18)0.0540 (14)0.0035 (15)−0.0003 (12)−0.0019 (13)
C20.071 (2)0.064 (2)0.0729 (18)−0.0044 (19)0.0066 (16)0.0111 (15)
C30.099 (3)0.065 (2)0.0708 (19)0.008 (2)−0.0016 (18)0.0184 (16)
C40.077 (3)0.077 (2)0.0709 (18)0.019 (2)−0.0068 (17)0.0096 (17)
C50.060 (2)0.073 (2)0.0624 (16)0.0054 (18)−0.0011 (14)0.0028 (15)
C60.0581 (19)0.0530 (17)0.0508 (13)0.0011 (16)−0.0013 (12)0.0000 (12)
C70.060 (2)0.065 (2)0.0524 (14)−0.0022 (18)0.0044 (14)−0.0041 (13)
C80.0519 (19)0.069 (2)0.0577 (15)−0.0028 (16)0.0015 (14)0.0013 (14)
C90.0474 (17)0.0605 (18)0.0587 (15)−0.0024 (15)0.0077 (12)−0.0002 (13)
C100.0555 (19)0.070 (2)0.0700 (17)0.0042 (18)0.0025 (14)−0.0030 (16)
C110.064 (2)0.065 (2)0.102 (3)0.0034 (18)0.0106 (18)−0.0143 (18)
C120.077 (3)0.080 (2)0.090 (2)−0.004 (2)0.0145 (19)−0.0252 (19)
C130.086 (3)0.098 (3)0.0616 (17)−0.011 (2)0.0015 (17)−0.0127 (19)
C140.072 (2)0.072 (2)0.0623 (17)0.0015 (18)−0.0006 (15)0.0027 (16)
O10.0715 (16)0.0775 (16)0.0936 (15)−0.0159 (14)0.0010 (12)0.0102 (12)
O20.0696 (15)0.0594 (13)0.0715 (11)0.0024 (11)−0.0063 (11)0.0074 (10)
O30.0630 (15)0.0853 (16)0.0960 (15)0.0009 (14)−0.0107 (12)−0.0177 (13)
C150.074 (2)0.0551 (17)0.0477 (13)−0.0081 (17)−0.0011 (13)0.0004 (13)
C160.065 (2)0.0583 (19)0.0498 (14)−0.0058 (18)0.0005 (13)−0.0007 (13)
C170.064 (2)0.087 (3)0.0703 (18)−0.003 (2)0.0061 (15)−0.0099 (18)
C180.073 (3)0.082 (3)0.0789 (19)−0.019 (2)0.0095 (17)−0.0024 (19)
C190.088 (3)0.069 (2)0.0620 (17)−0.013 (2)0.0050 (16)0.0052 (15)
C200.088 (2)0.0548 (19)0.0637 (16)−0.0058 (18)−0.0081 (16)0.0051 (14)
N10.0685 (18)0.0597 (16)0.0633 (13)−0.0001 (15)0.0019 (12)0.0000 (12)
N20.0722 (18)0.0584 (16)0.0741 (15)−0.0010 (15)0.0036 (13)0.0116 (13)
O40.118 (2)0.0554 (13)0.0679 (12)−0.0034 (14)−0.0144 (13)0.0085 (10)
O50.0718 (17)0.113 (2)0.0909 (16)0.0031 (16)0.0009 (13)0.0184 (15)
C1—C61.397 (4)C13—C141.386 (5)
C1—C21.386 (4)C13—H130.9300
C1—C81.508 (4)C14—H140.9300
C2—C31.379 (5)C15—C191.361 (4)
C2—H20.9300C15—C161.423 (4)
C3—C41.356 (5)C15—C201.491 (5)
C3—H30.9300C16—N21.333 (4)
C4—C51.382 (5)C16—N11.340 (4)
C4—H40.9300C17—N11.353 (4)
C5—C61.383 (4)C17—C181.353 (5)
C5—H50.9300C17—H170.9300
C6—C71.511 (4)C18—C191.393 (5)
C7—O11.252 (4)C18—H180.9300
C7—O21.252 (3)C19—H190.9300
C8—O31.212 (3)C20—O41.417 (4)
C8—C91.490 (4)C20—H20A0.9700
C9—C141.382 (4)C20—H20B0.9700
C9—C101.385 (4)N1—H10.8600
C10—C111.373 (4)N2—H2A0.8600
C10—H100.9300N2—H2B0.8600
C11—C121.369 (5)O4—H4A0.859 (19)
C11—H110.9300O5—H5A0.858 (18)
C12—C131.378 (5)O5—H5B0.858 (19)
C12—H120.9300
C6—C1—C2119.8 (3)C12—C13—C14119.9 (3)
C6—C1—C8121.8 (3)C12—C13—H13120.0
C2—C1—C8118.3 (3)C14—C13—H13120.0
C3—C2—C1120.1 (3)C9—C14—C13119.8 (3)
C3—C2—H2120.0C9—C14—H14120.1
C1—C2—H2120.0C13—C14—H14120.1
C4—C3—C2120.4 (3)C19—C15—C16117.2 (3)
C4—C3—H3119.8C19—C15—C20123.7 (3)
C2—C3—H3119.8C16—C15—C20119.1 (3)
C3—C4—C5120.1 (3)N2—C16—N1118.1 (3)
C3—C4—H4119.9N2—C16—C15123.1 (3)
C5—C4—H4119.9N1—C16—C15118.8 (3)
C4—C5—C6120.9 (3)N1—C17—C18120.9 (3)
C4—C5—H5119.6N1—C17—H17119.5
C6—C5—H5119.6C18—C17—H17119.5
C1—C6—C5118.6 (3)C17—C18—C19117.5 (4)
C1—C6—C7119.6 (3)C17—C18—H18121.2
C5—C6—C7121.6 (3)C19—C18—H18121.2
O1—C7—O2124.8 (3)C15—C19—C18122.9 (3)
O1—C7—C6118.8 (3)C15—C19—H19118.5
O2—C7—C6116.3 (3)C18—C19—H19118.5
O3—C8—C9121.2 (3)O4—C20—C15113.8 (3)
O3—C8—C1121.0 (3)O4—C20—H20A108.8
C9—C8—C1117.7 (2)C15—C20—H20A108.8
C14—C9—C10119.3 (3)O4—C20—H20B108.8
C14—C9—C8120.5 (3)C15—C20—H20B108.8
C10—C9—C8120.0 (3)H20A—C20—H20B107.7
C11—C10—C9120.7 (3)C16—N1—C17122.6 (3)
C11—C10—H10119.6C16—N1—H1118.7
C9—C10—H10119.6C17—N1—H1118.7
C12—C11—C10119.7 (3)C16—N2—H2A120.0
C12—C11—H11120.1C16—N2—H2B120.0
C10—C11—H11120.1H2A—N2—H2B120.0
C11—C12—C13120.5 (3)C20—O4—H4A106 (3)
C11—C12—H12119.8H5A—O5—H5B106 (3)
C13—C12—H12119.8
C6—C1—C2—C30.9 (4)C1—C8—C9—C10155.1 (3)
C8—C1—C2—C3−175.8 (3)C14—C9—C10—C11−1.1 (5)
C1—C2—C3—C40.5 (5)C8—C9—C10—C11174.4 (3)
C2—C3—C4—C5−1.0 (5)C9—C10—C11—C12−0.4 (5)
C3—C4—C5—C60.1 (5)C10—C11—C12—C130.8 (5)
C2—C1—C6—C5−1.7 (4)C11—C12—C13—C140.3 (5)
C8—C1—C6—C5174.8 (2)C10—C9—C14—C132.2 (5)
C2—C1—C6—C7172.4 (3)C8—C9—C14—C13−173.3 (3)
C8—C1—C6—C7−11.0 (4)C12—C13—C14—C9−1.9 (5)
C4—C5—C6—C11.2 (4)C19—C15—C16—N2178.5 (3)
C4—C5—C6—C7−172.8 (3)C20—C15—C16—N2−0.4 (4)
C1—C6—C7—O1155.1 (3)C19—C15—C16—N1−1.8 (4)
C5—C6—C7—O1−30.9 (4)C20—C15—C16—N1179.4 (2)
C1—C6—C7—O2−26.5 (4)N1—C17—C18—C19−0.7 (5)
C5—C6—C7—O2147.4 (3)C16—C15—C19—C181.7 (4)
C6—C1—C8—O3121.8 (3)C20—C15—C19—C18−179.6 (3)
C2—C1—C8—O3−61.6 (4)C17—C18—C19—C15−0.5 (5)
C6—C1—C8—C9−63.1 (3)C19—C15—C20—O45.2 (4)
C2—C1—C8—C9113.5 (3)C16—C15—C20—O4−176.1 (2)
O3—C8—C9—C14145.7 (3)N2—C16—N1—C17−179.5 (2)
C1—C8—C9—C14−29.5 (4)C15—C16—N1—C170.8 (4)
O3—C8—C9—C10−29.8 (4)C18—C17—N1—C160.5 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.861.932.775 (3)167
N1—H1···O2i0.862.623.303 (3)137
N2—H2A···O2i0.862.042.845 (3)156
N2—H2B···O5ii0.862.112.942 (4)162
O4—H4A···O2iii0.86 (2)1.92 (2)2.765 (3)168 (4)
O5—H5A···O40.86 (2)1.96 (2)2.807 (3)167 (4)
O5—H5B···O10.86 (2)2.28 (4)2.964 (4)136 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.861.932.775 (3)167
N1—H1⋯O2i0.862.623.303 (3)137
N2—H2A⋯O2i0.862.042.845 (3)156
N2—H2B⋯O5ii0.862.112.942 (4)162
O4—H4A⋯O2iii0.86 (2)1.92 (2)2.765 (3)168 (4)
O5—H5A⋯O40.86 (2)1.96 (2)2.807 (3)167 (4)
O5—H5B⋯O10.86 (2)2.28 (4)2.964 (4)136 (4)

Symmetry codes: (i) ; (ii) ; (iii) .

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