Literature DB >> 22412534

3-(1H-Imidazol-1-yl)-1-phenyl-propan-1-ol.

Hoong-Kun Fun, Ching Kheng Quah, Mohamed I Attia, Hatem A Abdel-Aziz, Khalid A Al-Rashood.   

Abstract

In the title compound, C(12)H(14)N(2)O, the imidazole ring forms a dihedral angle of 66.73 (5)° with the phenyl ring. In the crystal, mol-ecules are linked via O-H⋯N and C-H⋯O hydrogen bonds into sheets lying parallel to (100). The crystal structure is further consolidated by C-H⋯π inter-actions.

Entities:  

Year:  2012        PMID: 22412534      PMCID: PMC3295423          DOI: 10.1107/S1600536812004254

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and the pharmacological activities of the title compound, see: Latge (1999 ▶); Steenbergn & Casadevall (2000 ▶); Pacetti & Gelone (2003 ▶); Spellberg et al. (2006 ▶). For the preparation of the title compound, see: Aboul-Enein et al. (2011 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C12H14N2O M = 202.25 Monoclinic, a = 9.0352 (5) Å b = 11.8521 (7) Å c = 10.3462 (6) Å β = 109.688 (1)° V = 1043.17 (10) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 100 K 0.34 × 0.26 × 0.19 mm

Data collection

Bruker SMART APEXII DUO CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.972, T max = 0.985 14426 measured reflections 3777 independent reflections 3245 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.125 S = 1.05 3777 reflections 140 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.67 e Å−3 Δρmin = −0.26 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812004254/hb6620sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812004254/hb6620Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812004254/hb6620Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H14N2OF(000) = 432
Mr = 202.25Dx = 1.288 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 6547 reflections
a = 9.0352 (5) Åθ = 3.0–32.6°
b = 11.8521 (7) ŵ = 0.08 mm1
c = 10.3462 (6) ÅT = 100 K
β = 109.688 (1)°Block, colourless
V = 1043.17 (10) Å30.34 × 0.26 × 0.19 mm
Z = 4
Bruker SMART APEXII DUO CCD diffractometer3777 independent reflections
Radiation source: fine-focus sealed tube3245 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.022
φ and ω scansθmax = 32.6°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −13→12
Tmin = 0.972, Tmax = 0.985k = −17→17
14426 measured reflectionsl = −14→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.125H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0644P)2 + 0.3608P] where P = (Fo2 + 2Fc2)/3
3777 reflections(Δ/σ)max = 0.001
140 parametersΔρmax = 0.67 e Å3
0 restraintsΔρmin = −0.26 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.48286 (8)0.08562 (6)0.36457 (8)0.02067 (16)
N10.25481 (8)0.31589 (7)0.35682 (8)0.01420 (15)
N20.32358 (10)0.45590 (7)0.24613 (9)0.02066 (17)
C10.31643 (10)−0.13411 (8)0.29554 (9)0.01560 (16)
H1B0.3689−0.12850.39180.019*
C20.27877 (11)−0.23971 (8)0.23471 (10)0.01808 (18)
H2B0.3073−0.30590.28920.022*
C30.19909 (12)−0.24865 (8)0.09354 (10)0.01975 (18)
H3A0.1735−0.32080.05190.024*
C40.15757 (11)−0.15146 (9)0.01470 (9)0.01935 (18)
H4A0.1013−0.1570−0.08090.023*
C50.19809 (11)−0.04577 (8)0.07534 (9)0.01624 (17)
H5A0.17130.02030.02030.019*
C60.27760 (10)−0.03610 (8)0.21592 (9)0.01380 (16)
C70.32242 (10)0.07925 (8)0.28116 (9)0.01549 (16)
H7A0.30170.13700.20660.019*
C80.22380 (10)0.10796 (8)0.37099 (9)0.01587 (16)
H8A0.11180.11160.31240.019*
H8B0.23500.04640.43830.019*
C90.26905 (11)0.21929 (8)0.44836 (9)0.01656 (17)
H9A0.20070.23170.50440.020*
H9B0.37890.21420.51170.020*
C100.37482 (11)0.37408 (8)0.33713 (10)0.01860 (18)
H10A0.48280.35790.38330.022*
C110.16177 (11)0.44949 (8)0.20509 (10)0.01811 (18)
H11A0.09140.49800.13970.022*
C120.11734 (10)0.36343 (8)0.27205 (9)0.01602 (17)
H12A0.01310.34110.26210.019*
H1O10.543 (2)0.0448 (17)0.3186 (19)0.048 (5)*
U11U22U33U12U13U23
O10.0152 (3)0.0220 (4)0.0251 (3)−0.0023 (2)0.0071 (3)−0.0072 (3)
N10.0142 (3)0.0116 (3)0.0184 (3)0.0000 (2)0.0076 (3)−0.0010 (2)
N20.0182 (3)0.0179 (4)0.0290 (4)0.0007 (3)0.0120 (3)0.0036 (3)
C10.0146 (3)0.0167 (4)0.0159 (3)0.0024 (3)0.0057 (3)0.0012 (3)
C20.0204 (4)0.0137 (4)0.0232 (4)0.0028 (3)0.0114 (3)0.0018 (3)
C30.0227 (4)0.0154 (4)0.0244 (4)−0.0015 (3)0.0121 (3)−0.0055 (3)
C40.0207 (4)0.0212 (4)0.0160 (4)−0.0009 (3)0.0060 (3)−0.0035 (3)
C50.0174 (4)0.0158 (4)0.0159 (4)0.0010 (3)0.0062 (3)0.0007 (3)
C60.0125 (3)0.0141 (4)0.0160 (3)−0.0003 (3)0.0063 (3)−0.0015 (3)
C70.0155 (3)0.0142 (4)0.0180 (4)−0.0009 (3)0.0072 (3)−0.0011 (3)
C80.0176 (4)0.0127 (4)0.0205 (4)−0.0004 (3)0.0106 (3)−0.0001 (3)
C90.0207 (4)0.0135 (4)0.0176 (4)0.0012 (3)0.0091 (3)0.0003 (3)
C100.0141 (4)0.0174 (4)0.0262 (4)−0.0003 (3)0.0092 (3)0.0014 (3)
C110.0176 (4)0.0168 (4)0.0219 (4)0.0032 (3)0.0092 (3)0.0020 (3)
C120.0136 (3)0.0160 (4)0.0195 (4)0.0003 (3)0.0069 (3)−0.0012 (3)
O1—C71.4173 (11)C4—H4A0.9500
O1—H1O10.97 (2)C5—C61.3931 (12)
N1—C101.3571 (11)C5—H5A0.9500
N1—C121.3767 (11)C6—C71.5180 (12)
N1—C91.4636 (12)C7—C81.5269 (12)
N2—C101.3218 (13)C7—H7A1.0000
N2—C111.3802 (12)C8—C91.5260 (13)
C1—C21.3907 (13)C8—H8A0.9900
C1—C61.3986 (12)C8—H8B0.9900
C1—H1B0.9500C9—H9A0.9900
C2—C31.3979 (14)C9—H9B0.9900
C2—H2B0.9500C10—H10A0.9500
C3—C41.3881 (14)C11—C121.3671 (13)
C3—H3A0.9500C11—H11A0.9500
C4—C51.3936 (13)C12—H12A0.9500
C7—O1—H1O1107.8 (11)C6—C7—C8110.39 (7)
C10—N1—C12106.94 (8)O1—C7—H7A108.7
C10—N1—C9126.45 (8)C6—C7—H7A108.7
C12—N1—C9126.60 (7)C8—C7—H7A108.7
C10—N2—C11105.03 (8)C9—C8—C7113.82 (7)
C2—C1—C6120.42 (8)C9—C8—H8A108.8
C2—C1—H1B119.8C7—C8—H8A108.8
C6—C1—H1B119.8C9—C8—H8B108.8
C1—C2—C3120.16 (9)C7—C8—H8B108.8
C1—C2—H2B119.9H8A—C8—H8B107.7
C3—C2—H2B119.9N1—C9—C8112.79 (7)
C4—C3—C2119.55 (9)N1—C9—H9A109.0
C4—C3—H3A120.2C8—C9—H9A109.0
C2—C3—H3A120.2N1—C9—H9B109.0
C3—C4—C5120.22 (8)C8—C9—H9B109.0
C3—C4—H4A119.9H9A—C9—H9B107.8
C5—C4—H4A119.9N2—C10—N1111.96 (8)
C6—C5—C4120.59 (8)N2—C10—H10A124.0
C6—C5—H5A119.7N1—C10—H10A124.0
C4—C5—H5A119.7C12—C11—N2110.28 (8)
C5—C6—C1119.04 (8)C12—C11—H11A124.9
C5—C6—C7120.32 (8)N2—C11—H11A124.9
C1—C6—C7120.64 (8)C11—C12—N1105.80 (8)
O1—C7—C6112.55 (7)C11—C12—H12A127.1
O1—C7—C8107.72 (7)N1—C12—H12A127.1
C6—C1—C2—C3−1.16 (13)O1—C7—C8—C952.81 (10)
C1—C2—C3—C4−0.15 (14)C6—C7—C8—C9176.07 (7)
C2—C3—C4—C51.41 (14)C10—N1—C9—C8−107.01 (10)
C3—C4—C5—C6−1.37 (14)C12—N1—C9—C871.41 (11)
C4—C5—C6—C10.06 (13)C7—C8—C9—N159.04 (10)
C4—C5—C6—C7179.56 (8)C11—N2—C10—N1−0.15 (11)
C2—C1—C6—C51.20 (12)C12—N1—C10—N20.31 (11)
C2—C1—C6—C7−178.30 (8)C9—N1—C10—N2178.99 (8)
C5—C6—C7—O1−129.62 (8)C10—N2—C11—C12−0.07 (11)
C1—C6—C7—O149.88 (10)N2—C11—C12—N10.25 (11)
C5—C6—C7—C8109.98 (9)C10—N1—C12—C11−0.33 (10)
C1—C6—C7—C8−70.52 (10)C9—N1—C12—C11−179.01 (8)
D—H···AD—HH···AD···AD—H···A
O1—H1O1···N2i0.964 (19)1.89 (2)2.8432 (12)171.7 (17)
C1—H1B···O1ii0.952.483.4188 (12)172
C10—H10A···Cg1iii0.952.683.4778 (12)142
C12—H12A···Cg1iv0.952.693.5373 (11)149
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C1–C6 phenyl ring.

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O1⋯N2i0.964 (19)1.89 (2)2.8432 (12)171.7 (17)
C1—H1B⋯O1ii0.952.483.4188 (12)172
C10—H10ACg1iii0.952.683.4778 (12)142
C12—H12ACg1iv0.952.693.5373 (11)149

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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