Literature DB >> 22412483

2-((E)-{3-[(E)-2-Hy-droxy-3,5-diiodo-benzyl-idene-amino]-2,2-dimethyl-prop-yl}imino-meth-yl)-4,6-diiodo-phenol.

Hadi Kargar, Reza Kia, Tayebeh Shakarami, Muhammad Nawaz Tahir.   

Abstract

The asymmetric unit of the title compound, C(19)H(18)I(4)N(2)O(2), comprises a potentially tetra-dentate Schiff base ligand. The disordered H atoms on the N and O atoms were refined with site occupancies of 0.54 (8)/0.46 (8) and 0.59 (7)/0.41 (7), respectively. The dihedral angle between the benzene rings is 73.3 (3)°. Intra-molecular O-H⋯N and N-H⋯O hydrogen bonds make S(6) ring motifs. Short I⋯I [3.8919 (7) Å] and I⋯Cg [Cg is a ring centroid; 3.911 (2) Å] contacts are present in the crystal structure. The crystal structure is further stabilized by inter-molecular π-π inter-actions [centroid-to-centroid distance = 3.827 (3) Å].

Entities:  

Year:  2012        PMID: 22412483      PMCID: PMC3297293          DOI: 10.1107/S1600536812003704

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see for example: Kargar et al. (2011 ▶, 2012 ▶); Kia et al. (2010 ▶). For standard values of bond lengths, see: Allen et al. (1987 ▶). For details of hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For van der Waals radii, see: Bondi (1964 ▶).

Experimental

Crystal data

C19H18I4N2O2 M = 813.95 Orthorhombic, a = 12.2057 (5) Å b = 11.8169 (5) Å c = 31.8157 (15) Å V = 4588.9 (3) Å3 Z = 8 Mo Kα radiation μ = 5.45 mm−1 T = 291 K 0.18 × 0.12 × 0.08 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.441, T max = 0.670 39183 measured reflections 5472 independent reflections 2871 reflections with I > 2σ(I) R int = 0.099

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.079 S = 1.00 5471 reflections 248 parameters H-atom parameters constrained Δρmax = 1.11 e Å−3 Δρmin = −0.94 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2005 ▶); program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812003704/vm2150sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812003704/vm2150Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812003704/vm2150Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H18I4N2O2F(000) = 2992
Mr = 813.95Dx = 2.356 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 3211 reflections
a = 12.2057 (5) Åθ = 2.5–27.5°
b = 11.8169 (5) ŵ = 5.45 mm1
c = 31.8157 (15) ÅT = 291 K
V = 4588.9 (3) Å3Block, yellow
Z = 80.18 × 0.12 × 0.08 mm
Bruker SMART APEXII CCD area-detector diffractometer5472 independent reflections
Radiation source: fine-focus sealed tube2871 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.099
φ and ω scansθmax = 27.9°, θmin = 1.3°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −15→16
Tmin = 0.441, Tmax = 0.670k = −15→14
39183 measured reflectionsl = −41→39
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.079H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0213P)2] where P = (Fo2 + 2Fc2)/3
5471 reflections(Δ/σ)max = 0.001
248 parametersΔρmax = 1.11 e Å3
0 restraintsΔρmin = −0.94 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
I10.67018 (4)0.26848 (5)0.383838 (17)0.06718 (18)
I21.02767 (3)0.17675 (4)0.508635 (14)0.04527 (13)
I30.82622 (4)0.00536 (4)0.001078 (17)0.06243 (17)
I40.65930 (4)−0.30987 (4)0.131933 (17)0.06028 (17)
O10.8328 (3)0.1220 (4)0.32918 (15)0.0501 (12)
H10.87840.09640.31280.075*0.46 (8)
O20.8775 (3)−0.2231 (3)0.17564 (15)0.0475 (12)
H20.9371−0.20770.18600.071*0.59 (7)
N10.9942 (4)−0.0017 (4)0.31029 (17)0.0421 (14)
H1A0.94240.02530.30630.051*0.54 (8)
N21.0582 (4)−0.1182 (4)0.18514 (18)0.0421 (14)
H1B1.0104−0.15800.20070.051*0.41 (7)
C10.8751 (5)0.1317 (5)0.3665 (2)0.0337 (15)
C20.8201 (4)0.1925 (5)0.3985 (2)0.0379 (16)
C30.8633 (5)0.2052 (5)0.4382 (2)0.0365 (16)
H30.82590.24680.45840.044*
C40.9642 (5)0.1548 (5)0.44789 (19)0.0333 (15)
C51.0178 (5)0.0919 (5)0.41839 (19)0.0331 (15)
H51.08380.05740.42540.040*
C60.9755 (5)0.0782 (5)0.37794 (19)0.0313 (14)
C71.0307 (5)0.0096 (5)0.3477 (2)0.0370 (16)
H71.0947−0.02780.35540.044*
C81.0466 (5)−0.0734 (5)0.2792 (2)0.0436 (17)
H8A0.9906−0.11390.26370.052*
H8B1.0916−0.12900.29350.052*
C91.1191 (5)−0.0066 (5)0.2478 (2)0.0381 (16)
C101.2243 (5)0.0305 (6)0.2697 (2)0.067 (2)
H10A1.26930.07190.25030.100*
H10B1.2634−0.03500.27940.100*
H10C1.20650.07800.29320.100*
C111.0597 (5)0.0973 (5)0.2311 (2)0.054 (2)
H11A1.10270.13170.20930.081*
H11B1.04900.15050.25350.081*
H11C0.98980.07520.21980.081*
C121.1517 (4)−0.0858 (5)0.2119 (2)0.0426 (17)
H12A1.2066−0.04880.19470.051*
H12B1.1844−0.15370.22360.051*
C131.0478 (5)−0.0796 (5)0.1485 (2)0.0392 (17)
H131.1029−0.03360.13770.047*
C140.9534 (5)−0.1038 (5)0.1222 (2)0.0340 (15)
C150.9413 (5)−0.0561 (5)0.0826 (2)0.0359 (16)
H150.9962−0.00920.07230.043*
C160.8510 (5)−0.0761 (5)0.0583 (2)0.0361 (16)
C170.7708 (5)−0.1491 (5)0.0727 (2)0.0406 (17)
H170.7100−0.16460.05600.049*
C180.7804 (5)−0.1982 (5)0.1111 (2)0.0352 (16)
C190.8699 (5)−0.1780 (5)0.1381 (2)0.0329 (15)
U11U22U33U12U13U23
I10.0476 (3)0.1081 (5)0.0458 (3)0.0294 (3)0.0003 (3)−0.0007 (3)
I20.0508 (3)0.0558 (3)0.0292 (2)0.0012 (2)−0.0041 (2)−0.0020 (2)
I30.0643 (3)0.0714 (4)0.0516 (4)0.0043 (2)−0.0106 (3)0.0231 (3)
I40.0551 (3)0.0626 (3)0.0631 (4)−0.0240 (2)−0.0120 (3)0.0108 (3)
O10.041 (3)0.078 (3)0.031 (3)0.007 (2)−0.005 (2)−0.010 (3)
O20.049 (3)0.056 (3)0.037 (3)−0.012 (2)−0.002 (2)0.005 (2)
N10.038 (3)0.053 (4)0.035 (4)−0.002 (3)0.009 (3)−0.007 (3)
N20.044 (3)0.055 (4)0.027 (4)0.000 (3)−0.002 (3)−0.008 (3)
C10.030 (4)0.043 (4)0.028 (4)−0.009 (3)0.005 (3)0.003 (3)
C20.029 (4)0.052 (4)0.033 (4)−0.001 (3)0.002 (3)0.002 (3)
C30.044 (4)0.034 (4)0.032 (4)−0.004 (3)0.006 (3)−0.004 (3)
C40.042 (4)0.037 (4)0.022 (4)−0.006 (3)0.006 (3)0.005 (3)
C50.030 (3)0.043 (4)0.027 (4)−0.002 (3)0.004 (3)0.007 (3)
C60.039 (4)0.032 (4)0.023 (4)−0.001 (3)0.006 (3)0.000 (3)
C70.047 (4)0.034 (4)0.030 (4)−0.002 (3)0.004 (3)−0.005 (3)
C80.047 (4)0.053 (4)0.031 (4)−0.001 (3)0.002 (3)−0.009 (4)
C90.038 (4)0.050 (4)0.027 (4)−0.002 (3)−0.002 (3)−0.009 (3)
C100.046 (5)0.103 (7)0.051 (6)−0.016 (4)−0.008 (4)−0.033 (5)
C110.069 (5)0.054 (5)0.038 (5)0.002 (4)0.008 (4)0.001 (4)
C120.030 (4)0.066 (5)0.032 (4)−0.003 (3)−0.002 (3)−0.011 (4)
C130.036 (4)0.043 (4)0.038 (5)0.003 (3)0.003 (3)−0.016 (4)
C140.034 (4)0.038 (4)0.030 (4)−0.002 (3)−0.002 (3)−0.003 (3)
C150.040 (4)0.032 (4)0.036 (4)0.001 (3)0.005 (3)−0.001 (3)
C160.039 (4)0.034 (4)0.035 (4)0.010 (3)−0.002 (3)0.000 (3)
C170.035 (4)0.044 (4)0.043 (5)0.000 (3)−0.009 (3)−0.002 (4)
C180.037 (4)0.031 (4)0.038 (4)−0.007 (3)0.000 (3)−0.005 (3)
C190.040 (4)0.024 (4)0.034 (4)0.002 (3)0.005 (3)−0.004 (3)
I1—C22.091 (6)C8—C91.550 (8)
I2—C42.098 (6)C8—H8A0.9700
I3—C162.081 (6)C8—H8B0.9700
I4—C182.090 (6)C9—C111.522 (8)
O1—C11.301 (7)C9—C101.526 (8)
O1—H10.8203C9—C121.530 (8)
O2—C191.312 (7)C10—H10A0.9600
O2—H20.8201C10—H10B0.9600
N1—C71.278 (8)C10—H10C0.9600
N1—C81.452 (7)C11—H11A0.9600
N1—H1A0.7184C11—H11B0.9600
N2—C131.259 (8)C11—H11C0.9600
N2—C121.474 (7)C12—H12A0.9700
N2—H1B0.8984C12—H12B0.9700
C1—C21.416 (8)C13—C141.452 (8)
C1—C61.426 (8)C13—H130.9300
C2—C31.376 (8)C14—C151.388 (8)
C3—C41.403 (8)C14—C191.436 (8)
C3—H30.9300C15—C161.367 (8)
C4—C51.364 (8)C15—H150.9300
C5—C61.396 (8)C16—C171.383 (8)
C5—H50.9300C17—C181.359 (8)
C6—C71.427 (8)C17—H170.9300
C7—H70.9300C18—C191.408 (8)
C1—O1—H1110.0C12—C9—C8108.6 (5)
C19—O2—H2109.8C9—C10—H10A109.5
C7—N1—C8122.8 (6)C9—C10—H10B109.5
C7—N1—H1A115.1H10A—C10—H10B109.5
C8—N1—H1A121.8C9—C10—H10C109.5
C13—N2—C12121.2 (6)H10A—C10—H10C109.5
C13—N2—H1B129.4H10B—C10—H10C109.5
C12—N2—H1B108.7C9—C11—H11A109.5
O1—C1—C2120.8 (6)C9—C11—H11B109.5
O1—C1—C6122.4 (6)H11A—C11—H11B109.5
C2—C1—C6116.7 (6)C9—C11—H11C109.5
C3—C2—C1122.2 (6)H11A—C11—H11C109.5
C3—C2—I1119.6 (5)H11B—C11—H11C109.5
C1—C2—I1118.2 (5)N2—C12—C9112.8 (5)
C2—C3—C4119.5 (6)N2—C12—H12A109.0
C2—C3—H3120.2C9—C12—H12A109.0
C4—C3—H3120.2N2—C12—H12B109.0
C5—C4—C3120.0 (6)C9—C12—H12B109.0
C5—C4—I2121.6 (5)H12A—C12—H12B107.8
C3—C4—I2118.4 (4)N2—C13—C14122.8 (6)
C4—C5—C6121.3 (6)N2—C13—H13118.6
C4—C5—H5119.3C14—C13—H13118.6
C6—C5—H5119.3C15—C14—C19119.4 (6)
C5—C6—C1120.1 (5)C15—C14—C13121.8 (6)
C5—C6—C7120.9 (6)C19—C14—C13118.8 (6)
C1—C6—C7119.0 (6)C16—C15—C14122.0 (6)
N1—C7—C6121.5 (6)C16—C15—H15119.0
N1—C7—H7119.2C14—C15—H15119.0
C6—C7—H7119.2C15—C16—C17119.4 (6)
N1—C8—C9113.2 (5)C15—C16—I3122.2 (5)
N1—C8—H8A108.9C17—C16—I3118.4 (5)
C9—C8—H8A108.9C18—C17—C16120.2 (6)
N1—C8—H8B108.9C18—C17—H17119.9
C9—C8—H8B108.9C16—C17—H17119.9
H8A—C8—H8B107.8C17—C18—C19122.9 (6)
C11—C9—C10109.2 (5)C17—C18—I4119.6 (5)
C11—C9—C12110.9 (5)C19—C18—I4117.6 (5)
C10—C9—C12107.3 (5)O2—C19—C18122.7 (6)
C11—C9—C8111.4 (5)O2—C19—C14121.2 (6)
C10—C9—C8109.4 (6)C18—C19—C14116.1 (6)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O10.721.902.526 (6)145
O2—H2···N20.821.822.548 (6)148
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O10.721.902.526 (6)145
O2—H2⋯N20.821.822.548 (6)148
  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  5,5'-Bis(diethyl-amino)-2,2'-[2,2-di-methyl-propane-1,3-diylbis-(nitrilo-methylidyne)]diphenol.

Authors:  Reza Kia; Hadi Kargar; Muhammad Nawaz Tahir; Fatemeh Kianoosh
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-11

3.  4,4'-Dimeth-oxy-2,2'-[2,2-dimethyl-propane-1,3-diylbis(nitrilo-methanylyl-idene)]diphenol.

Authors:  Hadi Kargar; Reza Kia; Elham Pahlavani; Muhammad Nawaz Tahir
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-12

4.  4,6-Dichloro-2-{[(E)-(3-{[(E)-3,5-dichloro-2-hy-droxy-benzyl-idene]amino}-2,2-dimethyl-prop-yl)imino]-meth-yl}phenol.

Authors:  Hadi Kargar; Reza Kia; Saeideh Abbasian; Muhammad Nawaz Tahir
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-17

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  2 in total

1.  {4,4',6,6'-Tetra-iodo-2,2'-[(2,2-dimethyl-propane-1,3-di-yl)bis-(nitrilo-methanylyl-idene)]diphenolato}nickel(II).

Authors:  Hadi Kargar; Reza Kia; Tayebeh Shakarami; Muhammad Nawaz Tahir
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-16

2.  {4,4',6,6'-Tetra-iodo-2,2'-[2,2-dimethyl-propane-1,3-diylbis(nitrilo-methanylyl-idene)]diphenolato}copper(II).

Authors:  Hadi Kargar; Reza Kia; Tayebeh Shakarami; Muhammad Nawaz Tahir
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-12
  2 in total

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