Literature DB >> 22411901

Update for the logicle data scale including operational code implementations.

Wayne A Moore1, David R Parks.   

Abstract

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Year:  2012        PMID： 22411901      PMCID： PMC4761345          DOI： 10.1002/cyto.a.22030

Source DB:  PubMed          Journal:  Cytometry A        ISSN： 1552-4922            Impact factor:   4.355


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  6 in total

1.  A variance-stabilizing transformation for gene-expression microarray data.

Authors:  B P Durbin; J S Hardin; D M Hawkins; D M Rocke
Journal:  Bioinformatics       Date:  2002       Impact factor: 6.937

2.  Hyperlog-a flexible log-like transform for negative, zero, and positive valued data.

Authors:  C Bruce Bagwell
Journal:  Cytometry A       Date:  2005-03       Impact factor: 4.355

3.  Interpreting flow cytometry data: a guide for the perplexed.

Authors:  Leonore A Herzenberg; James Tung; Wayne A Moore; Leonard A Herzenberg; David R Parks
Journal:  Nat Immunol       Date:  2006-07       Impact factor: 25.606

4.  A new "Logicle" display method avoids deceptive effects of logarithmic scaling for low signals and compensated data.

Authors:  David R Parks; Mario Roederer; Wayne A Moore
Journal:  Cytometry A       Date:  2006-06       Impact factor: 4.355

Review 5.  Modern flow cytometry: a practical approach.

Authors:  James W Tung; Kartoosh Heydari; Rabin Tirouvanziam; Bita Sahaf; David R Parks; Leonard A Herzenberg; Leonore A Herzenberg
Journal:  Clin Lab Med       Date:  2007-09       Impact factor: 1.935

6.  Automatic clustering of flow cytometry data with density-based merging.

Authors:  Guenther Walther; Noah Zimmerman; Wayne Moore; David Parks; Stephen Meehan; Ilana Belitskaya; Jinhui Pan; Leonore Herzenberg
Journal:  Adv Bioinformatics       Date:  2009-11-19
  6 in total
  16 in total

1.  Methods for discovery and characterization of cell subsets in high dimensional mass cytometry data.

Authors:  Kirsten E Diggins; P Brent Ferrell; Jonathan M Irish
Journal:  Methods       Date:  2015-05-13       Impact factor: 3.608

Review 2.  Computational analysis of high-throughput flow cytometry data.

Authors:  J Paul Robinson; Bartek Rajwa; Valery Patsekin; Vincent Jo Davisson
Journal:  Expert Opin Drug Discov       Date:  2012-06-18       Impact factor: 6.098

3.  Evaluating flow cytometer performance with weighted quadratic least squares analysis of LED and multi-level bead data.

Authors:  David R Parks; Faysal El Khettabi; Eric Chase; Robert A Hoffman; Stephen P Perfetto; Josef Spidlen; James C S Wood; Wayne A Moore; Ryan R Brinkman
Journal:  Cytometry A       Date:  2017-02-03       Impact factor: 4.355

4.  Bystander CD8+ T cells are abundant and phenotypically distinct in human tumour infiltrates.

Authors:  Yannick Simoni; Etienne Becht; Michael Fehlings; Chiew Yee Loh; Si-Lin Koo; Karen Wei Weng Teng; Joe Poh Sheng Yeong; Rahul Nahar; Tong Zhang; Hassen Kared; Kaibo Duan; Nicholas Ang; Michael Poidinger; Yin Yeng Lee; Anis Larbi; Alexis J Khng; Emile Tan; Cherylin Fu; Ronnie Mathew; Melissa Teo; Wan Teck Lim; Chee Keong Toh; Boon-Hean Ong; Tina Koh; Axel M Hillmer; Angela Takano; Tony Kiat Hon Lim; Eng Huat Tan; Weiwei Zhai; Daniel S W Tan; Iain Beehuat Tan; Evan W Newell
Journal:  Nature       Date:  2018-05-16       Impact factor: 49.962

5.  Induction of Rhodobacter capsulatus Gene Transfer Agent Gene Expression Is a Bistable Stochastic Process Repressed by an Extracellular Calcium-Binding RTX Protein Homologue.

Authors:  Hao Ding; Marc P Grüll; Martin E Mulligan; Andrew S Lang; J Thomas Beatty
Journal:  J Bacteriol       Date:  2019-11-05       Impact factor: 3.490

6.  A benchmark for evaluation of algorithms for identification of cellular correlates of clinical outcomes.

Authors:  Nima Aghaeepour; Pratip Chattopadhyay; Maria Chikina; Tom Dhaene; Sofie Van Gassen; Miron Kursa; Bart N Lambrecht; Mehrnoush Malek; G J McLachlan; Yu Qian; Peng Qiu; Yvan Saeys; Rick Stanton; Dong Tong; Celine Vens; Sławomir Walkowiak; Kui Wang; Greg Finak; Raphael Gottardo; Tim Mosmann; Garry P Nolan; Richard H Scheuermann; Ryan R Brinkman
Journal:  Cytometry A       Date:  2015-10-08       Impact factor: 4.355

7.  Fluorescent Proteins for Flow Cytometry.

Authors:  Teresa S Hawley; Robert G Hawley; William G Telford
Journal:  Curr Protoc Cytom       Date:  2017-04-03

8.  GenePattern flow cytometry suite.

Authors:  Josef Spidlen; Aaron Barsky; Karin Breuer; Peter Carr; Marc-Danie Nazaire; Barbara Allen Hill; Yu Qian; Ted Liefeld; Michael Reich; Jill P Mesirov; Peter Wilkinson; Richard H Scheuermann; Rafick-Pierre Sekaly; Ryan R Brinkman
Journal:  Source Code Biol Med       Date:  2013-07-03

9.  Flow cytometry bioinformatics.

Authors:  Kieran O'Neill; Nima Aghaeepour; Josef Spidlen; Ryan Brinkman
Journal:  PLoS Comput Biol       Date:  2013-12-05       Impact factor: 4.475

10.  Earth Mover's Distance (EMD): A True Metric for Comparing Biomarker Expression Levels in Cell Populations.

Authors:  Darya Y Orlova; Noah Zimmerman; Stephen Meehan; Connor Meehan; Jeffrey Waters; Eliver E B Ghosn; Alexander Filatenkov; Gleb A Kolyagin; Yael Gernez; Shanel Tsuda; Wayne Moore; Richard B Moss; Leonore A Herzenberg; Guenther Walther
Journal:  PLoS One       Date:  2016-03-23       Impact factor: 3.240
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