| Literature DB >> 22408735 |
Susan M Bertram, Lauren P Fitzsimmons, Emily M McAuley, Howard D Rundle, Root Gorelick.
Abstract
The phenotypic variance-covariance matrix (P) describes the multivariate distribution of a population in phenotypic space, providing direct insight into the appropriateness of measured traits within the context of multicollinearity (i.e., do they describe any significant variance that is independent of other traits), and whether trait covariances restrict the combinations of phenotypes available to selection. Given the importance of P, it is therefore surprising that phenotypic covariances are seldom jointly analyzed and that the dimensionality of P has rarely been investigated in a rigorous statistical framework. Here, we used a repeated measures approach to quantify P separately for populations of four cricket species using seven acoustic signaling traits thought to enhance mate attraction. P was of full or almost full dimensionality in all four species, indicating that all traits conveyed some information that was independent of the other traits, and that phenotypic trait covariances do not constrain the combinations of signaling traits available to selection. P also differed significantly among species, although the dominant axis of phenotypic variation (p(max)) was largely shared among three of the species (Acheta domesticus, Gryllus assimilis, G. texensis), but different in the fourth (G. veletis). In G. veletis and A. domesticus, but not G. assimilis and G. texensis, p(max) was correlated with body size, while p(max) was not correlated with residual mass (a condition measure) in any of the species. This study reveals the importance of jointly analyzing phenotypic traits.Entities:
Keywords: Acoustic signaling traits; Gryllus; P matrix; crickets; mate attraction; matrix dimensionality; multivariate; phenotypic variance–covariance matrix
Year: 2012 PMID: 22408735 PMCID: PMC3297187 DOI: 10.1002/ece3.76
Source DB: PubMed Journal: Ecol Evol ISSN: 2045-7758 Impact factor: 2.912
Figure 1Signaling traits of the long-distance mate attraction signal of Gryllus assimilis.
Descriptive statistics for all acoustic signal components. Trait abbreviations listed to the right of the trait name
| Trait | Species | Mean | SE | CV | R2adj | Diff. | ||||
|---|---|---|---|---|---|---|---|---|---|---|
| Signaling time (min) TSC | 117 | 22.14 | 1.39 | 67.74 | 0.6499 | 66.76 | <0.0001 | 0.41 | A | |
| 85 | 181.01 | 16.86 | 85.90 | 0.9655 | B | |||||
| 35 | 16.44 | 4.59 | 165.38 | 0.4329 | A | |||||
| 51 | 170.93 | 18.60 | 77.70 | 0.9074 | B | |||||
| Pulse duration (ms) PD | 100 | 14.87 | 0.46 | 31.08 | 0.9836 | 71.95 | <0.0001 | 0.45 | A | |
| 82 | 9.69 | 0.16 | 14.78 | 0.9574 | B | |||||
| 25 | 7.73 | 0.27 | 17.29 | 0.7381 | C | |||||
| 49 | 15.07 | 0.23 | 10.83 | 0.9452 | A | |||||
| Interpulse duration (ms) IPD | 100 | 63.79 | 0.63 | 9.91 | 0.9408 | 2197.07 | <0.0001 | 0.96 | A | |
| 82 | 16.19 | 0.20 | 11.46 | 0.9345 | B | |||||
| 25 | 14.53 | 0.28 | 9.77 | 0.8828 | B | |||||
| 49 | 31.62 | 0.39 | 8.60 | 0.8595 | C | |||||
| Chirp duration (ms) CD | 100 | 82.47 | 0.84 | 10.22 | 0.9184 | 140 | <0.0001 | 0.62 | A | |
| 82 | 114.63 | 2.16 | 17.04 | 0.9431 | B | |||||
| 25 | 450.30 | 51.99 | 57.73 | 0.8604 | C | |||||
| 49 | 121.36 | 3.11 | 17.94 | 0.9660 | B | |||||
| Interchirp duration (ms) ICD | 100 | 1104.04 | 60.66 | 54.94 | 0.9385 | 72.57 | <0.0001 | 0.46 | A | |
| 82 | 1571.87 | 52.36 | 30.16 | 0.8789 | B | |||||
| 25 | 354.94 | 27.33 | 38.50 | 0.9889 | C | |||||
| 49 | 511.42 | 24.80 | 33.94 | 0.8790 | C | |||||
| Carrier frequency (Hz) CF | 100 | 4502.00 | 29.17 | 6.48 | 0.9330 | 358.12 | <0.0001 | 0.81 | A | |
| 82 | 3780.25 | 33.74 | 8.08 | 0.9503 | B | |||||
| 25 | 5238.55 | 44.32 | 4.23 | 0.6119 | C | |||||
| 49 | 5309.56 | 38.75 | 5.11 | 0.9556 | C | |||||
| Amplitude (dB) AMP | 100 | 50.54 | 1.16 | 22.98 | 0.9597 | 67.13 | <0.0001 | 0.44 | A | |
| 82 | 47.22 | 1.35 | 25.85 | 0.8044 | A | |||||
| 25 | 58.16 | 1.85 | 15.91 | 0.6072 | B | |||||
| 49 | 73.91 | 1.21 | 11.45 | 0.8526 | C | |||||
| Pronotum area (mm2) | 117 | 8.64 | 0.14 | 16.44 | 401.76 | <0.0001 | 0.81 | A | ||
| 85 | 19.62 | 0.32 | 14.91 | B | ||||||
| 35 | 18.66 | 0.56 | 17.76 | B | ||||||
| 51 | 15.47 | 0.27 | 12.34 | C | ||||||
| Wet mass (mg) | 117 | 253.74 | 4.38 | 17.85 | 150.26 | <0.0001 | 0.63 | A | ||
| 85 | 482.19 | 11.02 | 20.82 | B | ||||||
| 35 | 393.73 | 17.35 | 24.93 | C | ||||||
| 51 | 431.64 | 10.56 | 16.41 | C |
CV = coefficient of variation; r = repeatability; Diff. = species with different letters are statistically different using post hoc Tukey's test; R2adj = adjusted R2; SE = Standard Error; F and P = outputs from an analysis of variance.
Phenotypic variance–covariance matrices (P matrices) of seven acoustic signaling traits for four cricket species, as estimated from the individual-level variance–covariance matrix in a multivariate mixed model fit separately by species. Phenotypic variances are given along the diagonal (bold) and covariances (lower left) and correlations (upper right, in italics) are given on the off-diagonals. pmax, p2, and p3 are the first three eigenvectors of P, respectively. Trait abbreviations are given in Table 1
| AMP | CD | CF | ICD | IPD | PD | TSCX | ||||
|---|---|---|---|---|---|---|---|---|---|---|
| AMP | − | − | − | −0.466 | −0.234 | 0.369 | ||||
| CD | 0.193 | − | −0.276 | 0.500 | 0.270 | |||||
| CF | −0.221 | −0.326 | − | − | − | 0.416 | −0.300 | 0.786 | ||
| ICD | −0.190 | 0.149 | −0.059 | − | − | 0.078 | 0.384 | −0.105 | ||
| IPD | −0.338 | 0.255 | 0.130 | 0.224 | − | − | 0.241 | 0.601 | 0.328 | |
| PD | 0.594 | 0.518 | −0.513 | −0.021 | −0.173 | −0.574 | 0.196 | 0.226 | ||
| TSCX | 0.497 | 0.133 | −0.252 | −0.167 | −0.384 | 0.418 | −0.375 | −0.243 | 0.057 | |
| AMP | − | − | − | 0.509 | 0.008 | 0.333 | ||||
| CD | 0.358 | − | − | 0.363 | 0.327 | 0.043 | ||||
| CF | −0.277 | −0.299 | − | − | −0.329 | −0.380 | 0.503 | |||
| ICD | −0.298 | −0.125 | 0.071 | − | − | −0.324 | 0.371 | −0.545 | ||
| IPD | −0.140 | 0.040 | 0.018 | 0.181 | − | −0.171 | 0.564 | 0.544 | ||
| PD | 0.307 | 0.373 | −0.349 | −0.127 | 0.069 | 0.348 | 0.411 | −0.006 | ||
| TSCX | 0.448 | 0.295 | −0.219 | −0.388 | −0.353 | 0.240 | 0.495 | −0.353 | −0.204 | |
| AMP | − | − | 0.501 | 0.037 | −0.161 | |||||
| CD | 0.360 | − | − | 0.459 | 0.281 | 0.256 | ||||
| CF | −0.090 | 0.102 | − | − | − | −0.133 | 0.635 | 0.503 | ||
| ICD | −0.282 | −0.262 | −0.131 | − | − | −0.346 | −0.262 | −0.063 | ||
| IPD | 0.006 | −0.052 | −0.282 | 0.087 | − | 0.092 | −0.585 | 0.787 | ||
| PD | 0.450 | 0.253 | −0.326 | −0.221 | 0.222 | 0.523 | −0.289 | −0.168 | ||
| TSCX | 0.274 | 0.330 | 0.028 | −0.263 | −0.024 | 0.241 | 0.345 | 0.148 | 0.068 | |
| AMP | − | − | − | − | −0.433 | −0.073 | 0.414 | |||
| CD | −0.321 | − | − | 0.352 | 0.573 | 0.487 | ||||
| CF | 0.419 | −0.150 | − | − | − | −0.365 | 0.519 | 0.049 | ||
| ICD | −0.524 | 0.384 | −0.227 | − | 0.423 | 0.185 | −0.171 | |||
| IPD | −0.444 | 0.513 | −0.335 | 0.445 | − | 0.455 | 0.102 | 0.274 | ||
| PD | −0.084 | 0.026 | −0.356 | 0.191 | 0.304 | − | 0.230 | −0.585 | 0.539 | |
| TSCX | 0.428 | −0.128 | 0.304 | −0.378 | −0.375 | −0.148 | −0.342 | 0.100 | 0.441 |
TSC has been normalized using a Box-Cox transformation to yield TSCX.
Model fit statistics of the effective number of dimensions of the individual-level phenotypic variance–covariance matrices (P matrices) for each species, as determined from a series of nested likelihood-ratio tests employing a factor-analytic model. The percent of the total variance (% var) was calculated from a full-dimensionality (unconstrained) model at the individual level. Significant P-values in bold
| No. of dimensions | % var | No. of traits | -2LL | AIC | |
|---|---|---|---|---|---|
| 0 | — | 28 | 9660.3 | 9716.3 | — |
| 1 | 46.9 | 35 | 8810.2 | 8880.2 | |
| 2 | 24.9 | 41 | 8251.8 | 8333.8 | |
| 3 | 12.7 | 46 | 7868.5 | 7960.5 | |
| 4 | 6.8 | 50 | 7618.4 | 7716.4 | |
| 5 | 4.0 | 53 | 7430.3 | 7534.3 | |
| 6 | 3.2 | 55 | 7310.7 | 7420.7 | |
| 7 | 1.4 | 56 | 7261.5 | 7373.5 | |
| 0 | — | 28 | 2849.0 | 2905.0 | — |
| 1 | 55.0 | 35 | 2722.1 | 2792.1 | |
| 2 | 22.7 | 41 | 2604.0 | 2684.0 | |
| 3 | 8.8 | 46 | 2531.8 | 2621.8 | |
| 4 | 7.0 | 50 | 2482.3 | 2580.3 | |
| 5 | 4.4 | 53 | 2448.2 | 2554.2 | |
| 6 | 1.4 | 55 | 2420.6 | 2530.6 | |
| 7 | 0.7 | 56 | 2416.5 | 2528.5 | |
| 0 | — | 28 | 1695.6 | 1751.6 | — |
| 1 | 46.1 | 35 | 1601.0 | 1669.0 | |
| 2 | 31.4 | 41 | 1533.7 | 1613.7 | |
| 3 | 11.2 | 46 | 1474.3 | 1566.3 | |
| 4 | 6.8 | 50 | 1451.3 | 1551.3 | |
| 5 | 3.3 | 53 | 1442.5 | 1548.5 | |
| 6 | 1.0 | 55 | 1440.7 | 1560.4 | 0.3970 |
| 7 | 0.1 | 56 | 1440.7 | 1552.7 | 0.8557 |
| 0 | — | 28 | 5417.4 | 5473.4 | — |
| 1 | 49.5 | 35 | 4882.2 | 4952.2 | |
| 2 | 17.7 | 41 | 4441.8 | 4523.8 | |
| 3 | 12.3 | 46 | 4121.7 | 4211.7 | |
| 4 | 9.2 | 50 | 3876.0 | 3976.0 | |
| 5 | 5.8 | 53 | 3717.9 | 3823.9 | |
| 6 | 3.3 | 55 | 3599.4 | 3709.4 | |
| 7 | 2.3 | 56 | 3532.6 | 3644.6 |
Similarity matrix, §, comparing the individual-level phenotypic variance–covariance matrices (P matrices) among all pairwise combinations of the four species of crickets. Values below the diagonal are Krzanowski (1979) subspaces comparison of the first three eigenvectors of P and are standardized to range from zero, indicating noncoincident subspaces (i.e., no similarity), to one, indicating identical subspaces. Values above the diagonal are the vector correlation of pmax, ranging from –1, indicating that the two eigenvectors are oriented 180˚ from one another, to +1, indicating two identical eigenvectors, with zero indicating orthogonal vectors
| −0.926 | −0.849 | 0.092 | ||
| 0.795 | 0.915 | −0.277 | ||
| 0.735 | 0.706 | −0.109 | ||
| 0.753 | 0.613 | 0.711 |
Figure 2Two-dimensional bi-plot depicting the dominant axes of variation in the among-species similarity matrix, §, comparing subspaces of P (data derived from Table 4, below the diagonal).
Model fit statistics for the linear regression of individual-level BLUPs for pmax on body size (pronotum area) and condition (measured as the residuals of the regression of body mass on pronotum area), separately by species. Significant P-values are bolded
| df | Slope ( | ||
|---|---|---|---|
| Size | 1.95 | 0.255 | |
| Condition | 1.95 | −0.007 (0.136) | 0.023 |
| Size | 1.28 | 0.003 (0.941) | 0.000 |
| Condition | 1.27 | 0.002 (0.438) | 0.022 |
| Size | 1.23 | 0.048 (0.289) | 0.049 |
| Condition | 1.21 | 0.003 (0.156) | 0.094 |
| Size | 1.45 | 0.132 | |
| Condition | 1.40 | −0.002 (0.603) | 0.007 |