Literature DB >> 22408247

Draft genome sequence of Streptomyces acidiscabies 84-104, an emergent plant pathogen.

José C Huguet-Tapia1, Rosemary Loria.   

Abstract

A draft genome sequence of the plant pathogen Streptomyces acidiscabies 84-104, an emergent plant pathogen, is presented here. The genome is among the largest of streptomycetes, at more than 11 Mb, and encodes a 100-kb pathogenicity island (PAI) shared with other plant-pathogenic streptomycetes. The presence of this conserved PAI, and the remnants of a conserved integrase/recombinase at its 3' end, supports the hypothesis that S. acidiscabies emerged as a plant pathogen as a result of this acquisition.

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Year:  2012        PMID： 22408247      PMCID： PMC3302480          DOI： 10.1128/JB.06767-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  12 in total

1.  Ab initio gene identification: prokaryote genome annotation with GeneScan and GLIMMER.

Authors:  Gautam Aggarwal; Ramakrishna Ramaswamy
Journal:  J Biosci       Date:  2002-02       Impact factor: 1.826

2.  The COG database: a tool for genome-scale analysis of protein functions and evolution.

Authors:  R L Tatusov; M Y Galperin; D A Natale; E V Koonin
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2).

Authors:  S D Bentley; K F Chater; A-M Cerdeño-Tárraga; G L Challis; N R Thomson; K D James; D E Harris; M A Quail; H Kieser; D Harper; A Bateman; S Brown; G Chandra; C W Chen; M Collins; A Cronin; A Fraser; A Goble; J Hidalgo; T Hornsby; S Howarth; C-H Huang; T Kieser; L Larke; L Murphy; K Oliver; S O'Neil; E Rabbinowitsch; M-A Rajandream; K Rutherford; S Rutter; K Seeger; D Saunders; S Sharp; R Squares; S Squares; K Taylor; T Warren; A Wietzorrek; J Woodward; B G Barrell; J Parkhill; D A Hopwood
Journal:  Nature       Date:  2002-05-09       Impact factor: 49.962

4.  Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites.

Authors:  S Omura; H Ikeda; J Ishikawa; A Hanamoto; C Takahashi; M Shinose; Y Takahashi; H Horikawa; H Nakazawa; T Osonoe; H Kikuchi; T Shiba; Y Sakaki; M Hattori
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-25       Impact factor: 11.205

5.  A large, mobile pathogenicity island confers plant pathogenicity on Streptomyces species.

Authors:  Johan A Kers; Kimberly D Cameron; Madhumita V Joshi; Raghida A Bukhalid; Joanne E Morello; Michael J Wach; Donna M Gibson; Rosemary Loria
Journal:  Mol Microbiol       Date:  2005-02       Impact factor: 3.501

6.  Streptomyces turgidiscabies Car8 contains a modular pathogenicity island that shares virulence genes with other actinobacterial plant pathogens.

Authors:  José C Huguet-Tapia; Jonathan H Badger; Rosemary Loria; Gregg S Pettis
Journal:  Plasmid       Date:  2010-11-16       Impact factor: 3.466

Review 7.  Evolution of plant pathogenicity in Streptomyces.

Authors:  Rosemary Loria; Johan Kers; Madhumita Joshi
Journal:  Annu Rev Phytopathol       Date:  2006       Impact factor: 13.078

8.  Nitration of a peptide phytotoxin by bacterial nitric oxide synthase.

Authors:  Johan A Kers; Michael J Wach; Stuart B Krasnoff; Joanne Widom; Kimberly D Cameron; Raghida A Bukhalid; Donna M Gibson; Brian R Crane; Rosemary Loria
Journal:  Nature       Date:  2004-05-06       Impact factor: 49.962

9.  Genome sequence of the streptomycin-producing microorganism Streptomyces griseus IFO 13350.

Authors:  Yasuo Ohnishi; Jun Ishikawa; Hirofumi Hara; Hirokazu Suzuki; Miwa Ikenoya; Haruo Ikeda; Atsushi Yamashita; Masahira Hattori; Sueharu Horinouchi
Journal:  J Bacteriol       Date:  2008-03-28       Impact factor: 3.490

10.  Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research.

Authors:  Ana Conesa; Stefan Götz; Juan Miguel García-Gómez; Javier Terol; Manuel Talón; Montserrat Robles
Journal:  Bioinformatics       Date:  2005-08-04       Impact factor: 6.937
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  4 in total

1.  Fungal phytopathogens encode functional homologues of plant rapid alkalinization factor (RALF) peptides.

Authors:  Elisha Thynne; Isabel M L Saur; Jaime Simbaqueba; Huw A Ogilvie; Yvonne Gonzalez-Cendales; Oliver Mead; Adam Taranto; Ann-Maree Catanzariti; Megan C McDonald; Benjamin Schwessinger; David A Jones; John P Rathjen; Peter S Solomon
Journal:  Mol Plant Pathol       Date:  2016-09-19       Impact factor: 5.663

2.  Genome Content and Phylogenomics Reveal both Ancestral and Lateral Evolutionary Pathways in Plant-Pathogenic Streptomyces Species.

Authors:  Jose C Huguet-Tapia; Tristan Lefebure; Jonathan H Badger; Dongli Guan; Gregg S Pettis; Michael J Stanhope; Rosemary Loria
Journal:  Appl Environ Microbiol       Date:  2016-01-29       Impact factor: 4.792

3.  Draft Genome Sequences of Streptomyces scabiei S58, Streptomyces turgidiscabies T45, and Streptomyces acidiscabies a10, the Pathogens of Potato Common Scab, Isolated in Japan.

Authors:  Tsuyoshi Tomihama; Yatsuka Nishi; Masao Sakai; Makoto Ikenaga; Takashi Okubo; Seishi Ikeda
Journal:  Genome Announc       Date:  2016-03-03

4.  The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome.

Authors:  Wencong Shi; Mingcong Li; Guangshan Wei; Renmao Tian; Cuiping Li; Bing Wang; Rongshan Lin; Chunyu Shi; Xiuli Chi; Bo Zhou; Zheng Gao
Journal:  Microbiome       Date:  2019-02-01       Impact factor: 14.650
  4 in total

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