Literature DB >> 22407608

Integration of proteomics into systems biology of cancer.

S Hanash1, M Schliekelman, Q Zhang, A Taguchi.   

Abstract

Deciphering the complexity and heterogeneity of cancer, benefits from integration of proteomic level data into systems biology efforts. The opportunities available as a result of advances in proteomic technologies, the successes to date, and the challenges involved in integrating diverse datasets are addressed in this review.
Copyright © 2012 Wiley Periodicals, Inc.

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Year:  2012        PMID： 22407608      PMCID： PMC4316827          DOI： 10.1002/wsbm.1169

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev Syst Biol Med        ISSN： 1939-005X


  56 in total

Review 1.  Untangling the intracellular signalling network in cancer--a strategy for data integration in acute myeloid leukaemia.

Authors:  Katarina M Jørgensen; Sigrun M Hjelle; Ola K Øye; Pål Puntervoll; Håkon Reikvam; Jørn Skavland; Endre Anderssen; Øystein Bruserud; Bjørn Tore Gjertsen
Journal:  J Proteomics       Date:  2010-11-12       Impact factor: 4.044

2.  Transcript and protein expression profiles of the NCI-60 cancer cell panel: an integromic microarray study.

Authors:  Uma T Shankavaram; William C Reinhold; Satoshi Nishizuka; Sylvia Major; Daisaku Morita; Krishna K Chary; Mark A Reimers; Uwe Scherf; Ari Kahn; Douglas Dolginow; Jeffrey Cossman; Eric P Kaldjian; Dominic A Scudiero; Emanuel Petricoin; Lance Liotta; Jae K Lee; John N Weinstein
Journal:  Mol Cancer Ther       Date:  2007-03-05       Impact factor: 6.261

3.  Profiling the human protein-DNA interactome reveals ERK2 as a transcriptional repressor of interferon signaling.

Authors:  Shaohui Hu; Zhi Xie; Akishi Onishi; Xueping Yu; Lizhi Jiang; Jimmy Lin; Hee-sool Rho; Crystal Woodard; Hong Wang; Jun-Seop Jeong; Shunyou Long; Xiaofei He; Herschel Wade; Seth Blackshaw; Jiang Qian; Heng Zhu
Journal:  Cell       Date:  2009-10-30       Impact factor: 41.582

4.  Exploratory analysis of multiple omics datasets using the adjusted RV coefficient.

Authors:  Claus-Dieter Mayer; Julie Lorent; Graham W Horgan
Journal:  Stat Appl Genet Mol Biol       Date:  2011

5.  Targets of the tumor suppressor miR-200 in regulation of the epithelial-mesenchymal transition in cancer.

Authors:  Mark J Schliekelman; Don L Gibbons; Vitor M Faca; Chad J Creighton; Zain H Rizvi; Qing Zhang; Chee-Hong Wong; Hong Wang; Christin Ungewiss; Young-Ho Ahn; Dong-Hoon Shin; Jonathan M Kurie; Samir M Hanash
Journal:  Cancer Res       Date:  2011-10-10       Impact factor: 12.701

6.  Integrative genomic and proteomic analysis of prostate cancer reveals signatures of metastatic progression.

Authors:  Sooryanarayana Varambally; Jianjun Yu; Bharathi Laxman; Daniel R Rhodes; Rohit Mehra; Scott A Tomlins; Rajal B Shah; Uma Chandran; Federico A Monzon; Michael J Becich; John T Wei; Kenneth J Pienta; Debashis Ghosh; Mark A Rubin; Arul M Chinnaiyan
Journal:  Cancer Cell       Date:  2005-11       Impact factor: 31.743

Review 7.  Future of personalized medicine in oncology: a systems biology approach.

Authors:  Ana Maria Gonzalez-Angulo; Bryan T J Hennessy; Gordon B Mills
Journal:  J Clin Oncol       Date:  2010-04-20       Impact factor: 44.544

8.  Comparison of proteomic and genomic analyses of the human breast cancer cell line T47D and the antiestrogen-resistant derivative T47D-r.

Authors:  Martina Huber; Inke Bahr; Jörn R Krätzschmar; Andreas Becker; Eva-Christina Müller; Peter Donner; Hans-Dieter Pohlenz; Martin R Schneider; Anette Sommer
Journal:  Mol Cell Proteomics       Date:  2003-10-13       Impact factor: 5.911

9.  Functional proteomics can define prognosis and predict pathologic complete response in patients with breast cancer.

Authors:  Ana M Gonzalez-Angulo; Bryan T Hennessy; Funda Meric-Bernstam; Aysegul Sahin; Wenbin Liu; Zhenlin Ju; Mark S Carey; Simen Myhre; Corey Speers; Lei Deng; Russell Broaddus; Ana Lluch; Sam Aparicio; Powel Brown; Lajos Pusztai; W Fraser Symmans; Jan Alsner; Jens Overgaard; Anne-Lise Borresen-Dale; Gabriel N Hortobagyi; Kevin R Coombes; Gordon B Mills
Journal:  Clin Proteomics       Date:  2011-07-08       Impact factor: 3.988

10.  An integrative -omics approach to identify functional sub-networks in human colorectal cancer.

Authors:  Rod K Nibbe; Mehmet Koyutürk; Mark R Chance
Journal:  PLoS Comput Biol       Date:  2010-01-15       Impact factor: 4.475
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  3 in total

Review 1.  Systems biology approaches to understanding Epithelial Mesenchymal Transition (EMT) in mucosal remodeling and signaling in asthma.

Authors:  Talha Ijaz; Konrad Pazdrak; Mridul Kalita; Rolf Konig; Sanjeev Choudhary; Bing Tian; Istvan Boldogh; Allan R Brasier
Journal:  World Allergy Organ J       Date:  2014-06-02       Impact factor: 4.084

2.  Effects of repetitive Iodine thyroid blocking on the foetal brain and thyroid in rats: a systems biology approach.

Authors:  David P A Cohen; Mohamed Amine Benadjaoud; Phillipe Lestaevel; Dalila Lebsir; Marc Benderitter; Maâmar Souidi
Journal:  Sci Rep       Date:  2020-07-02       Impact factor: 4.379

Review 3.  Proteomic approaches in biomarker discovery: new perspectives in cancer diagnostics.

Authors:  Petra Hudler; Nina Kocevar; Radovan Komel
Journal:  ScientificWorldJournal       Date:  2014-01-14
  3 in total

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