Literature DB >> 22406497

Applying DNA barcodes for identification of plant species in the family Araliaceae.

Zhihua Liu1, Xu Zeng, Dan Yang, Guiyan Chu, Zhengrong Yuan, Shilin Chen.   

Abstract

An effective DNA marker in authentication of the family Araliaceae was screened out of the five DNA regions (matK, rbcL, ITS2, psbA-trnH and ycf5). In the present study, 1113 sequences of 276 species from 23 genera (Araliaceae) were collected from DNA sequencing and GenBank, in which 16 specimens were from 5 provinces in China and Japan. All of the sequences were assessed in the success rates of PCR amplifications, intra- and inter-specific divergence, DNA barcoding gaps and efficiency of identification. Compared with other markers, ITS2 showed superiority in species discrimination with an accurate identification of 85.23% and 97.29% at the species and genus levels, respectively, in plant samples from the 589 sequences derived from Araliaceae. Consequently, as one of the most popular phylogenetic markers, our study indicated that ITS2 was a powerful barcode for Araliaceae identification.
Copyright © 2012 Elsevier B.V. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22406497     DOI: 10.1016/j.gene.2012.02.016

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  14 in total

Review 1.  The changing epitome of species identification - DNA barcoding.

Authors:  M Ajmal Ali; Gábor Gyulai; Norbert Hidvégi; Balázs Kerti; Fahad M A Al Hemaid; Arun K Pandey; Joongku Lee
Journal:  Saudi J Biol Sci       Date:  2014-03-31       Impact factor: 4.219

2.  The combination of ITS2 and psbA-trnH region is powerful DNA barcode markers for authentication of medicinal Terminalia plants from Thailand.

Authors:  Aekkhaluck Intharuksa; Yohei Sasaki; Hirokazu Ando; Wannaree Charoensup; Ratchuporn Suksathan; Kittipong Kertsawang; Panee Sirisa-Ard; Masayuki Mikage
Journal:  J Nat Med       Date:  2019-10-05       Impact factor: 2.343

Review 3.  Chronobiology in mammalian health.

Authors:  Zhihua Liu; Guiyan Chu
Journal:  Mol Biol Rep       Date:  2012-12-06       Impact factor: 2.316

4.  HRAS: a webserver for early warning of human health risk brought by aflatoxin.

Authors:  Ruifeng Hu; Xu Zeng; Weiwei Gao; Qian Wang; Zhihua Liu
Journal:  Mol Biol Rep       Date:  2012-10-18       Impact factor: 2.316

5.  CGAP: a new comprehensive platform for the comparative analysis of chloroplast genomes.

Authors:  Jinkui Cheng; Xu Zeng; Guomin Ren; Zhihua Liu
Journal:  BMC Bioinformatics       Date:  2013-03-14       Impact factor: 3.169

6.  Convenient, sensitive and high-throughput method for screening botanic origin.

Authors:  Yuan Yuan; Chao Jiang; Libing Liu; Shulin Yu; Zhanhu Cui; Min Chen; Shufang Lin; Shu Wang; Luqi Huang
Journal:  Sci Rep       Date:  2014-06-23       Impact factor: 4.379

7.  Comparing and authenticating on anatomical aspects of Abrus cantoniensis and Abrus mollis by microscopy.

Authors:  Zhifeng Zhang; Luyang Lu; Yuan Liu; Linsen Qing
Journal:  Pharmacognosy Res       Date:  2015 Apr-Jun

8.  The Use of DNA Barcoding on Recently Diverged Species in the Genus Gentiana (Gentianaceae) in China.

Authors:  Juan Liu; Hai-Fei Yan; Xue-Jun Ge
Journal:  PLoS One       Date:  2016-04-06       Impact factor: 3.240

9.  Ischemia/reperfusion-induced MKP-3 impairs endothelial NO formation via inactivation of ERK1/2 pathway.

Authors:  Dan Yang; Ping Xie; Zhihua Liu
Journal:  PLoS One       Date:  2012-07-27       Impact factor: 3.240

10.  Internal transcribed spacer 2 barcode: a good tool for identifying Acanthopanacis cortex.

Authors:  Sha Zhao; Xiaochen Chen; Jingyuan Song; Xiaohui Pang; Shilin Chen
Journal:  Front Plant Sci       Date:  2015-10-08       Impact factor: 5.753

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.