Literature DB >> 22405209

Linking the computational structure of variance adaptation to biophysical mechanisms.

Yusuf Ozuysal1, Stephen A Baccus.   

Abstract

In multiple sensory systems, adaptation to the variance of a sensory input changes the sensitivity, kinetics, and average response over timescales ranging from < 100 ms to tens of seconds. Here, we present a simple, biophysically relevant model of retinal contrast adaptation that accurately captures both the membrane potential response and all adaptive properties. The adaptive component of this model is a first-order kinetic process of the type used to describe ion channel gating and synaptic transmission. From the model, we conclude that all adaptive dynamics can be accounted for by depletion of a signaling mechanism, and that variance adaptation can be explained as adaptation to the mean of a rectified signal. The model parameters show strong similarity to known properties of bipolar cell synaptic vesicle pools. Diverse types of adaptive properties that implement theoretical principles of efficient coding can be generated by a single type of molecule or synapse with just a few microscopic states.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22405209      PMCID: PMC4046855          DOI: 10.1016/j.neuron.2011.12.029

Source DB:  PubMed          Journal:  Neuron        ISSN: 0896-6273            Impact factor:   17.173


  58 in total

1.  Temporal contrast adaptation in the input and output signals of salamander retinal ganglion cells.

Authors:  K J Kim; F Rieke
Journal:  J Neurosci       Date:  2001-01-01       Impact factor: 6.167

2.  Two actions of calcium regulate the supply of releasable vesicles at the ribbon synapse of retinal bipolar cells.

Authors:  A Gomis; J Burrone; L Lagnado
Journal:  J Neurosci       Date:  1999-08-01       Impact factor: 6.167

3.  Synaptic depression and the kinetics of exocytosis in retinal bipolar cells.

Authors:  J Burrone; L Lagnado
Journal:  J Neurosci       Date:  2000-01-15       Impact factor: 6.167

4.  Lateral inhibition in the inner retina is important for spatial tuning of ganglion cells.

Authors:  P B Cook; J S McReynolds
Journal:  Nat Neurosci       Date:  1998-12       Impact factor: 24.884

5.  Temporal contrast adaptation in salamander bipolar cells.

Authors:  F Rieke
Journal:  J Neurosci       Date:  2001-12-01       Impact factor: 6.167

6.  Predicting every spike: a model for the responses of visual neurons.

Authors:  J Keat; P Reinagel; R C Reid; M Meister
Journal:  Neuron       Date:  2001-06       Impact factor: 17.173

7.  Adaptation to temporal contrast in primate and salamander retina.

Authors:  D Chander; E J Chichilnisky
Journal:  J Neurosci       Date:  2001-12-15       Impact factor: 6.167

8.  Efficiency and ambiguity in an adaptive neural code.

Authors:  A L Fairhall; G D Lewen; W Bialek; R R de Ruyter Van Steveninck
Journal:  Nature       Date:  2001-08-23       Impact factor: 49.962

9.  A simple white noise analysis of neuronal light responses.

Authors:  E J Chichilnisky
Journal:  Network       Date:  2001-05       Impact factor: 1.273

10.  Bipolar cells use kainate and AMPA receptors to filter visual information into separate channels.

Authors:  S H DeVries
Journal:  Neuron       Date:  2000-12       Impact factor: 17.173

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  39 in total

1.  Integration over multiple timescales in primary auditory cortex.

Authors:  Stephen V David; Shihab A Shamma
Journal:  J Neurosci       Date:  2013-12-04       Impact factor: 6.167

2.  Critical and maximally informative encoding between neural populations in the retina.

Authors:  David B Kastner; Stephen A Baccus; Tatyana O Sharpee
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-09       Impact factor: 11.205

3.  Efficient and adaptive sensory codes.

Authors:  Wiktor F Młynarski; Ann M Hermundstad
Journal:  Nat Neurosci       Date:  2021-05-20       Impact factor: 24.884

4.  Inferring synaptic inputs from spikes with a conductance-based neural encoding model.

Authors:  Kenneth W Latimer; Fred Rieke; Jonathan W Pillow
Journal:  Elife       Date:  2019-12-18       Impact factor: 8.140

5.  Nonlinear spatial integration in the receptive field surround of retinal ganglion cells.

Authors:  Daisuke Takeshita; Tim Gollisch
Journal:  J Neurosci       Date:  2014-05-28       Impact factor: 6.167

Review 6.  The dynamic receptive fields of retinal ganglion cells.

Authors:  Sophia Wienbar; Gregory W Schwartz
Journal:  Prog Retin Eye Res       Date:  2018-06-23       Impact factor: 21.198

7.  Nonlinear computations shaping temporal processing of precortical vision.

Authors:  Daniel A Butts; Yuwei Cui; Alexander R R Casti
Journal:  J Neurophysiol       Date:  2016-06-22       Impact factor: 2.714

Review 8.  Analysis of Neuronal Spike Trains, Deconstructed.

Authors:  Johnatan Aljadeff; Benjamin J Lansdell; Adrienne L Fairhall; David Kleinfeld
Journal:  Neuron       Date:  2016-07-20       Impact factor: 17.173

9.  Functional Circuitry of the Retina.

Authors:  Jonathan B Demb; Joshua H Singer
Journal:  Annu Rev Vis Sci       Date:  2015-11-24       Impact factor: 6.422

10.  Adaptation of Inhibition Mediates Retinal Sensitization.

Authors:  David B Kastner; Yusuf Ozuysal; Georgia Panagiotakos; Stephen A Baccus
Journal:  Curr Biol       Date:  2019-08-01       Impact factor: 10.834

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