Literature DB >> 22401573

Nonadaptive algorithms for threshold group testing with inhibitors and error-tolerance.

Yichao He1, Haiyan Tian, Xinlu Zhang, Zhiwei Wang, Suogang Gao.   

Abstract

A group test gives a positive (negative) outcome if it contains at least u (at most l) positive items, and an arbitrary outcome if the number of positive items is between thresholds l and u. This problem introduced by Damaschke is called threshold group testing. It is a generalization of classical group testing. Chen and Fu extended this problem to the error-tolerant version and first proposed efficient nonadaptive algorithms. In this article, we extend threshold group testing to the k-inhibitors model in which a test has a positive outcome if it contains at least u positives and at most k-1 inhibitors. By using (d + k - l, u; 2e + 1]-disjunct matrix we provide nonadaptive algorithms for the threshold group testing model with k-inhibitors and at most e-erroneous outcomes. The decoding complexity is O(n(u+k) log n) for fixed parameters (d, u, l, k, e).

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Year:  2012        PMID: 22401573      PMCID: PMC3394854          DOI: 10.1089/cmb.2011.0229

Source DB:  PubMed          Journal:  J Comput Biol        ISSN: 1066-5277            Impact factor:   1.479


  2 in total

1.  Error-tolerant pooling designs with inhibitors.

Authors:  F K Hwang; Y C Liu
Journal:  J Comput Biol       Date:  2003       Impact factor: 1.479

2.  Decoding algorithms in pooling designs with inhibitors and error-tolerance.

Authors:  My T Thai; David Maccallum; Ping Deng; Weili Wu
Journal:  Int J Bioinform Res Appl       Date:  2007
  2 in total

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