Literature DB >> 12804093

Error-tolerant pooling designs with inhibitors.

F K Hwang1, Y C Liu.   

Abstract

Pooling designs are used in clone library screening to efficiently distinguish positive clones from negative clones. Mathematically, a pooling design is just a nonadaptive group testing scheme which has been extensively studied in the literature. In some applications, there is a third category of clones called "inhibitors" whose effect is to neutralize positives. Specifically, the presence of an inhibitor in a pool dictates a negative outcome even though positives are present. Sequential group testing schemes, which can be modified to three-stage schemes, have been proposed for the inhibitor model, but it is unknown whether a pooling design (a one-stage scheme) exists. Another open question raised in the literature is whether the inhibitor model can treat unreliable pool outcomes. In this paper, we answer both open problems by giving a pooling design, as well as a two-stage scheme, for the inhibitor model with unreliable outcomes. The number of pools required by our schemes are quite comparable to the three-stage scheme.

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Year:  2003        PMID: 12804093     DOI: 10.1089/106652703321825982

Source DB:  PubMed          Journal:  J Comput Biol        ISSN: 1066-5277            Impact factor:   1.479


  1 in total

1.  Nonadaptive algorithms for threshold group testing with inhibitors and error-tolerance.

Authors:  Yichao He; Haiyan Tian; Xinlu Zhang; Zhiwei Wang; Suogang Gao
Journal:  J Comput Biol       Date:  2012-03-08       Impact factor: 1.479

  1 in total

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