Literature DB >> 22398612

The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome.

Young-Ki Paik, Seul-Ki Jeong, Gilbert S Omenn, Mathias Uhlen, Samir Hanash, Sang Yun Cho, Hyoung-Joo Lee, Keun Na, Eun-Young Choi, Fangfei Yan, Fan Zhang, Yue Zhang, Michael Snyder, Yong Cheng, Rui Chen, György Marko-Varga, Eric W Deutsch, Hoguen Kim, Ja-Young Kwon, Ruedi Aebersold, Amos Bairoch, Allen D Taylor, Kwang Youl Kim, Eun-Young Lee, Denis Hochstrasser, Pierre Legrain, William S Hancock.   

Abstract

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22398612     DOI: 10.1038/nbt.2152

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


× No keyword cloud information.
  8 in total

1.  Initial sequencing and analysis of the human genome.

Authors:  E S Lander; L M Linton; B Birren; C Nusbaum; M C Zody; J Baldwin; K Devon; K Dewar; M Doyle; W FitzHugh; R Funke; D Gage; K Harris; A Heaford; J Howland; L Kann; J Lehoczky; R LeVine; P McEwan; K McKernan; J Meldrim; J P Mesirov; C Miranda; W Morris; J Naylor; C Raymond; M Rosetti; R Santos; A Sheridan; C Sougnez; Y Stange-Thomann; N Stojanovic; A Subramanian; D Wyman; J Rogers; J Sulston; R Ainscough; S Beck; D Bentley; J Burton; C Clee; N Carter; A Coulson; R Deadman; P Deloukas; A Dunham; I Dunham; R Durbin; L French; D Grafham; S Gregory; T Hubbard; S Humphray; A Hunt; M Jones; C Lloyd; A McMurray; L Matthews; S Mercer; S Milne; J C Mullikin; A Mungall; R Plumb; M Ross; R Shownkeen; S Sims; R H Waterston; R K Wilson; L W Hillier; J D McPherson; M A Marra; E R Mardis; L A Fulton; A T Chinwalla; K H Pepin; W R Gish; S L Chissoe; M C Wendl; K D Delehaunty; T L Miner; A Delehaunty; J B Kramer; L L Cook; R S Fulton; D L Johnson; P J Minx; S W Clifton; T Hawkins; E Branscomb; P Predki; P Richardson; S Wenning; T Slezak; N Doggett; J F Cheng; A Olsen; S Lucas; C Elkin; E Uberbacher; M Frazier; R A Gibbs; D M Muzny; S E Scherer; J B Bouck; E J Sodergren; K C Worley; C M Rives; J H Gorrell; M L Metzker; S L Naylor; R S Kucherlapati; D L Nelson; G M Weinstock; Y Sakaki; A Fujiyama; M Hattori; T Yada; A Toyoda; T Itoh; C Kawagoe; H Watanabe; Y Totoki; T Taylor; J Weissenbach; R Heilig; W Saurin; F Artiguenave; P Brottier; T Bruls; E Pelletier; C Robert; P Wincker; D R Smith; L Doucette-Stamm; M Rubenfield; K Weinstock; H M Lee; J Dubois; A Rosenthal; M Platzer; G Nyakatura; S Taudien; A Rump; H Yang; J Yu; J Wang; G Huang; J Gu; L Hood; L Rowen; A Madan; S Qin; R W Davis; N A Federspiel; A P Abola; M J Proctor; R M Myers; J Schmutz; M Dickson; J Grimwood; D R Cox; M V Olson; R Kaul; C Raymond; N Shimizu; K Kawasaki; S Minoshima; G A Evans; M Athanasiou; R Schultz; B A Roe; F Chen; H Pan; J Ramser; H Lehrach; R Reinhardt; W R McCombie; M de la Bastide; N Dedhia; H Blöcker; K Hornischer; G Nordsiek; R Agarwala; L Aravind; J A Bailey; A Bateman; S Batzoglou; E Birney; P Bork; D G Brown; C B Burge; L Cerutti; H C Chen; D Church; M Clamp; R R Copley; T Doerks; S R Eddy; E E Eichler; T S Furey; J Galagan; J G Gilbert; C Harmon; Y Hayashizaki; D Haussler; H Hermjakob; K Hokamp; W Jang; L S Johnson; T A Jones; S Kasif; A Kaspryzk; S Kennedy; W J Kent; P Kitts; E V Koonin; I Korf; D Kulp; D Lancet; T M Lowe; A McLysaght; T Mikkelsen; J V Moran; N Mulder; V J Pollara; C P Ponting; G Schuler; J Schultz; G Slater; A F Smit; E Stupka; J Szustakowki; D Thierry-Mieg; J Thierry-Mieg; L Wagner; J Wallis; R Wheeler; A Williams; Y I Wolf; K H Wolfe; S P Yang; R F Yeh; F Collins; M S Guyer; J Peterson; A Felsenfeld; K A Wetterstrand; A Patrinos; M J Morgan; P de Jong; J J Catanese; K Osoegawa; H Shizuya; S Choi; Y J Chen; J Szustakowki
Journal:  Nature       Date:  2001-02-15       Impact factor: 49.962

2.  Proteomics, human proteome project, and chromosomes.

Authors:  William Hancock; Gil Omenn; Pierre Legrain; Young-Ki Paik
Journal:  J Proteome Res       Date:  2010-11-29       Impact factor: 4.466

3.  Proteomics. Proteomics ponders prime time.

Authors:  Robert F Service
Journal:  Science       Date:  2008-09-26       Impact factor: 47.728

4.  Evolutionary constraints of phosphorylation in eukaryotes, prokaryotes, and mitochondria.

Authors:  Florian Gnad; Francesca Forner; Dorota F Zielinska; Ewan Birney; Jeremy Gunawardena; Matthias Mann
Journal:  Mol Cell Proteomics       Date:  2010-08-05       Impact factor: 5.911

5.  The human proteome project: current state and future direction.

Authors:  Pierre Legrain; Ruedi Aebersold; Alexander Archakov; Amos Bairoch; Kumar Bala; Laura Beretta; John Bergeron; Christoph H Borchers; Garry L Corthals; Catherine E Costello; Eric W Deutsch; Bruno Domon; William Hancock; Fuchu He; Denis Hochstrasser; György Marko-Varga; Ghasem Hosseini Salekdeh; Salvatore Sechi; Michael Snyder; Sudhir Srivastava; Mathias Uhlén; Cathy H Wu; Tadashi Yamamoto; Young-Ki Paik; Gilbert S Omenn
Journal:  Mol Cell Proteomics       Date:  2011-07       Impact factor: 5.911

6.  Identification of alternatively spliced transcripts using a proteomic informatics approach.

Authors:  Rajasree Menon; Gilbert S Omenn
Journal:  Methods Mol Biol       Date:  2011

7.  A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas.

Authors:  Terry Farrah; Eric W Deutsch; Gilbert S Omenn; David S Campbell; Zhi Sun; Julie A Bletz; Parag Mallick; Jonathan E Katz; Johan Malmström; Reto Ossola; Julian D Watts; Biaoyang Lin; Hui Zhang; Robert L Moritz; Ruedi Aebersold
Journal:  Mol Cell Proteomics       Date:  2011-06-01       Impact factor: 5.911

Review 8.  Mass spectrometry-based proteomics in cell biology.

Authors:  Tobias C Walther; Matthias Mann
Journal:  J Cell Biol       Date:  2010-08-23       Impact factor: 10.539

  8 in total
  71 in total

1.  Immunofluorescence and fluorescent-protein tagging show high correlation for protein localization in mammalian cells.

Authors:  Charlotte Stadler; Elton Rexhepaj; Vasanth R Singan; Robert F Murphy; Rainer Pepperkok; Mathias Uhlén; Jeremy C Simpson; Emma Lundberg
Journal:  Nat Methods       Date:  2013-02-24       Impact factor: 28.547

2.  PeptideShaker enables reanalysis of MS-derived proteomics data sets.

Authors:  Marc Vaudel; Julia M Burkhart; René P Zahedi; Eystein Oveland; Frode S Berven; Albert Sickmann; Lennart Martens; Harald Barsnes
Journal:  Nat Biotechnol       Date:  2015-01       Impact factor: 54.908

3.  Uniting ENCODE with genome-wide proteomics.

Authors:  Young-Ki Paik; William S Hancock
Journal:  Nat Biotechnol       Date:  2012-11       Impact factor: 54.908

4.  New and improved proteomics technologies for understanding complex biological systems: addressing a grand challenge in the life sciences.

Authors:  Leroy E Hood; Gilbert S Omenn; Robert L Moritz; Ruedi Aebersold; Keith R Yamamoto; Michael Amos; Jennie Hunter-Cevera; Laurie Locascio
Journal:  Proteomics       Date:  2012-09       Impact factor: 3.984

5.  MOPED 2.5--an integrated multi-omics resource: multi-omics profiling expression database now includes transcriptomics data.

Authors:  Elizabeth Montague; Larissa Stanberry; Roger Higdon; Imre Janko; Elaine Lee; Nathaniel Anderson; John Choiniere; Elizabeth Stewart; Gregory Yandl; William Broomall; Natali Kolker; Eugene Kolker
Journal:  OMICS       Date:  2014-06

6.  A chromosome-centric human proteome project (C-HPP) to characterize the sets of proteins encoded in chromosome 17.

Authors:  Suli Liu; Hogune Im; Amos Bairoch; Massimo Cristofanilli; Rui Chen; Eric W Deutsch; Stephen Dalton; David Fenyo; Susan Fanayan; Chris Gates; Pascale Gaudet; Marina Hincapie; Samir Hanash; Hoguen Kim; Seul-Ki Jeong; Emma Lundberg; George Mias; Rajasree Menon; Zhaomei Mu; Edouard Nice; Young-Ki Paik; Mathias Uhlen; Lance Wells; Shiaw-Lin Wu; Fangfei Yan; Fan Zhang; Yue Zhang; Michael Snyder; Gilbert S Omenn; Ronald C Beavis; William S Hancock
Journal:  J Proteome Res       Date:  2012-12-21       Impact factor: 4.466

Review 7.  A new class of protein cancer biomarker candidates: differentially expressed splice variants of ERBB2 (HER2/neu) and ERBB1 (EGFR) in breast cancer cell lines.

Authors:  Gilbert S Omenn; Yuanfang Guan; Rajasree Menon
Journal:  J Proteomics       Date:  2014-05-05       Impact factor: 4.044

8.  Chromosome 17 Missing Proteins: Recent Progress and Future Directions as Part of the neXt-MP50 Challenge.

Authors:  Omer Siddiqui; Hongjiu Zhang; Yuanfang Guan; Gilbert S Omenn
Journal:  J Proteome Res       Date:  2018-10-23       Impact factor: 4.466

9.  Chromosome 19 annotations with disease speciation: a first report from the Global Research Consortium.

Authors:  Carol L Nilsson; Frode Berven; Frode Selheim; Huiling Liu; Joseph R Moskal; Roger A Kroes; Erik P Sulman; Charles A Conrad; Frederick F Lang; Per E Andrén; Anna Nilsson; Elisabet Carlsohn; Hans Lilja; Johan Malm; David Fenyö; Devipriya Subramaniyam; Xiangdong Wang; Maria Gonzales-Gonzales; Noelia Dasilva; Paula Diez; Manuel Fuentes; Ákos Végvári; Karin Sjödin; Charlotte Welinder; Thomas Laurell; Thomas E Fehniger; Henrik Lindberg; Melinda Rezeli; Goutham Edula; Sophia Hober; György Marko-Varga
Journal:  J Proteome Res       Date:  2012-12-18       Impact factor: 4.466

10.  Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1.

Authors:  Eric W Deutsch; Christopher M Overall; Jennifer E Van Eyk; Mark S Baker; Young-Ki Paik; Susan T Weintraub; Lydie Lane; Lennart Martens; Yves Vandenbrouck; Ulrike Kusebauch; William S Hancock; Henning Hermjakob; Ruedi Aebersold; Robert L Moritz; Gilbert S Omenn
Journal:  J Proteome Res       Date:  2016-08-24       Impact factor: 4.466

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.