Literature DB >> 22397991

New connections between splicing and human disease.

Richard A Padgett1.   

Abstract

The removal by splicing of introns from the primary transcripts of most mammalian genes is an essential step in gene expression. Splicing is performed by large, complex ribonucleoprotein particles termed spliceosomes. Mammals contain two types that splice out mutually exclusive types of introns. However, the role of the minor spliceosome has been poorly studied. Recent reports have now shown that mutations in one minor spliceosomal snRNA, U4atac, are linked to a rare autosomal recessive developmental defect. In addition, very exciting recent results of exome deep-sequencing have found that recurrent, somatic, heterozygous mutations of other splicing factors occur at high frequencies in particular cancers and pre-cancerous conditions, suggesting that alterations in the core splicing machinery can contribute to tumorigenesis. Mis-splicing of crucial genes may underlie the pathologies of all of these diseases. Identifying these genes and understanding the mechanisms involved in their mis-splicing may lead to advancements in diagnosis and treatment. Copyright Â
© 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22397991      PMCID: PMC3319163          DOI: 10.1016/j.tig.2012.01.001

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  51 in total

1.  The U2AF35-related protein Urp contacts the 3' splice site to promote U12-type intron splicing and the second step of U2-type intron splicing.

Authors:  Haihong Shen; Xuexiu Zheng; Stephan Luecke; Michael R Green
Journal:  Genes Dev       Date:  2010-11-01       Impact factor: 11.361

Review 2.  Pre-mRNA splicing and retinitis pigmentosa.

Authors:  Daniel Mordes; Xiaoyan Luo; Amar Kar; David Kuo; Lili Xu; Kazuo Fushimi; Guowu Yu; Paul Sternberg; Jane Y Wu
Journal:  Mol Vis       Date:  2006-10-26       Impact factor: 2.367

Review 3.  A reappraisal of non-consensus mRNA splice sites.

Authors:  I J Jackson
Journal:  Nucleic Acids Res       Date:  1991-07-25       Impact factor: 16.971

4.  Microcephalic osteodysplastic primordial dwarfism type I with biallelic mutations in the RNU4ATAC gene.

Authors:  R Nagy; H Wang; B Albrecht; D Wieczorek; G Gillessen-Kaesbach; E Haan; P Meinecke; A de la Chapelle; J A Westman
Journal:  Clin Genet       Date:  2011-08-28       Impact factor: 4.438

5.  Requirement of U12 snRNA for in vivo splicing of a minor class of eukaryotic nuclear pre-mRNA introns.

Authors:  S L Hall; R A Padgett
Journal:  Science       Date:  1996-03-22       Impact factor: 47.728

6.  Reduced fidelity of branch point recognition and alternative splicing induced by the anti-tumor drug spliceostatin A.

Authors:  Anna Corrionero; Belén Miñana; Juan Valcárcel
Journal:  Genes Dev       Date:  2011-03-01       Impact factor: 11.361

7.  Association of TALS developmental disorder with defect in minor splicing component U4atac snRNA.

Authors:  Patrick Edery; Charles Marcaillou; Mourad Sahbatou; Audrey Labalme; Joelle Chastang; Renaud Touraine; Emmanuel Tubacher; Faiza Senni; Michael B Bober; Sheela Nampoothiri; Pierre-Simon Jouk; Elisabeth Steichen; Siren Berland; Annick Toutain; Carol A Wise; Damien Sanlaville; Francis Rousseau; Françoise Clerget-Darpoux; Anne-Louise Leutenegger
Journal:  Science       Date:  2011-04-08       Impact factor: 47.728

8.  Human U4/U6.U5 and U4atac/U6atac.U5 tri-snRNPs exhibit similar protein compositions.

Authors:  Claudia Schneider; Cindy L Will; Olga V Makarova; Evgeny M Makarov; Reinhard Lührmann
Journal:  Mol Cell Biol       Date:  2002-05       Impact factor: 4.272

9.  A splicing mutation affecting expression of ataxia-telangiectasia and Rad3-related protein (ATR) results in Seckel syndrome.

Authors:  Mark O'Driscoll; Victor L Ruiz-Perez; C Geoffrey Woods; Penny A Jeggo; Judith A Goodship
Journal:  Nat Genet       Date:  2003-03-17       Impact factor: 38.330

10.  Spliced segments at the 5' terminus of adenovirus 2 late mRNA.

Authors:  S M Berget; C Moore; P A Sharp
Journal:  Proc Natl Acad Sci U S A       Date:  1977-08       Impact factor: 11.205

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  79 in total

Review 1.  The pathogenicity of splicing defects: mechanistic insights into pre-mRNA processing inform novel therapeutic approaches.

Authors:  Elisabeth Daguenet; Gwendal Dujardin; Juan Valcárcel
Journal:  EMBO Rep       Date:  2015-11-13       Impact factor: 8.807

Review 2.  A day in the life of the spliceosome.

Authors:  A Gregory Matera; Zefeng Wang
Journal:  Nat Rev Mol Cell Biol       Date:  2014-02       Impact factor: 94.444

3.  Graded requirement for the spliceosome in cell cycle progression.

Authors:  Zemfira Karamysheva; Laura A Díaz-Martínez; Ross Warrington; Hongtao Yu
Journal:  Cell Cycle       Date:  2015       Impact factor: 4.534

4.  Genome-wide discovery of human splicing branchpoints.

Authors:  Tim R Mercer; Michael B Clark; Stacey B Andersen; Marion E Brunck; Wilfried Haerty; Joanna Crawford; Ryan J Taft; Lars K Nielsen; Marcel E Dinger; John S Mattick
Journal:  Genome Res       Date:  2015-01-05       Impact factor: 9.043

5.  Sequence-specific flexibility organization of splicing flanking sequence and prediction of splice sites in the human genome.

Authors:  Yongchun Zuo; Pengfei Zhang; Li Liu; Tao Li; Yong Peng; Guangpeng Li; Qianzhong Li
Journal:  Chromosome Res       Date:  2014-04-12       Impact factor: 5.239

Review 6.  RNA structure in splicing: An evolutionary perspective.

Authors:  Chien-Ling Lin; Allison J Taggart; William G Fairbrother
Journal:  RNA Biol       Date:  2016-07-25       Impact factor: 4.652

Review 7.  Mechanisms and Regulation of Alternative Pre-mRNA Splicing.

Authors:  Yeon Lee; Donald C Rio
Journal:  Annu Rev Biochem       Date:  2015-03-12       Impact factor: 23.643

Review 8.  Multiplexed primer extension sequencing: A targeted RNA-seq method that enables high-precision quantitation of mRNA splicing isoforms and rare pre-mRNA splicing intermediates.

Authors:  Michael A Gildea; Zachary W Dwyer; Jeffrey A Pleiss
Journal:  Methods       Date:  2019-05-21       Impact factor: 3.608

9.  Myc target gene, long intergenic noncoding RNA, Linc00176 in hepatocellular carcinoma regulates cell cycle and cell survival by titrating tumor suppressor microRNAs.

Authors:  D D H Tran; C Kessler; S E Niehus; M Mahnkopf; A Koch; T Tamura
Journal:  Oncogene       Date:  2017-09-04       Impact factor: 9.867

10.  Splicing factor 3B1 hypomethylation is associated with altered SF3B1 transcript expression in older humans.

Authors:  Alice C Holly; Luke C Pilling; Dena Hernandez; Benjamin P Lee; Andrew Singleton; Luigi Ferrucci; David Melzer; Lorna W Harries
Journal:  Mech Ageing Dev       Date:  2014-01-23       Impact factor: 5.432

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