Literature DB >> 22395462

Semi-quantitative immunohistochemical detection of 5-hydroxymethyl-cytosine reveals conservation of its tissue distribution between amphibians and mammals.

Rimple D Almeida1, Virginie Sottile, Matthew Loose, Paul A De Sousa, Andrew D Johnson, Alexey Ruzov.   

Abstract

5-Hydroxymethyl-cytosine (5-hmC) is a form of modified cytosine, which has recently attracted a considerable attention due to its potential role in transcriptional regulation. According to several reports 5-hydroxymethyl-cytosine distribution is tissue-specific in mammals. Thus, 5-hmC is enriched in embryonic cell populations and in adult neuronal tissue. Here, we describe a novel method of semi-quantitative immunohistochemical detection of 5-hmC and utilize it to assess the levels of this modification in amphibian tissues. We show that, similar to mammalian embryos, 5-hmC is enriched in axolotl tadpoles compared with adult tissues. Our data demonstrate that 5-hmC distribution is tissue-specific in amphibians, and that strong 5-hmC enrichment in neuronal cells is conserved between amphibians and mammals. In addition, we identify 5-hmC-enriched cell populations that are distributed in amphibian skin and connective tissue in a mosaic manner. Our results illustrate that immunochemistry can be successfully used not only for spatial identification of cells enriched with 5-hmC, but also for the semi-quantitative assessment of the levels of this epigenetic modification in single cells of different tissues.

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Year:  2012        PMID: 22395462      PMCID: PMC3335906          DOI: 10.4161/epi.7.2.18949

Source DB:  PubMed          Journal:  Epigenetics        ISSN: 1559-2294            Impact factor:   4.528


  10 in total

1.  Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine.

Authors:  Chun-Xiao Song; Keith E Szulwach; Ye Fu; Qing Dai; Chengqi Yi; Xuekun Li; Yujing Li; Chih-Hsin Chen; Wen Zhang; Xing Jian; Jing Wang; Li Zhang; Timothy J Looney; Baichen Zhang; Lucy A Godley; Leslie M Hicks; Bruce T Lahn; Peng Jin; Chuan He
Journal:  Nat Biotechnol       Date:  2010-12-12       Impact factor: 54.908

2.  Determination of genomic 5-hydroxymethyl-2'-deoxycytidine in human DNA by capillary electrophoresis with laser induced fluorescence.

Authors:  Annette M Krais; Yoon Jung Park; Christoph Plass; Heinz H Schmeiser
Journal:  Epigenetics       Date:  2011-05       Impact factor: 4.528

3.  Sensitive enzymatic quantification of 5-hydroxymethylcytosine in genomic DNA.

Authors:  Aleksandra Szwagierczak; Sebastian Bultmann; Christine S Schmidt; Fabio Spada; Heinrich Leonhardt
Journal:  Nucleic Acids Res       Date:  2010-08-04       Impact factor: 16.971

4.  Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1.

Authors:  Mamta Tahiliani; Kian Peng Koh; Yinghua Shen; William A Pastor; Hozefa Bandukwala; Yevgeny Brudno; Suneet Agarwal; Lakshminarayan M Iyer; David R Liu; L Aravind; Anjana Rao
Journal:  Science       Date:  2009-04-16       Impact factor: 47.728

5.  Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation.

Authors:  Gabriella Ficz; Miguel R Branco; Stefanie Seisenberger; Fátima Santos; Felix Krueger; Timothy A Hore; C Joana Marques; Simon Andrews; Wolf Reik
Journal:  Nature       Date:  2011-04-03       Impact factor: 49.962

6.  Lineage-specific distribution of high levels of genomic 5-hydroxymethylcytosine in mammalian development.

Authors:  Alexey Ruzov; Yanina Tsenkina; Andrea Serio; Tatiana Dudnakova; Judy Fletcher; Yu Bai; Tatiana Chebotareva; Steve Pells; Zara Hannoun; Gareth Sullivan; Siddharthan Chandran; David C Hay; Mark Bradley; Ian Wilmut; Paul De Sousa
Journal:  Cell Res       Date:  2011-07-12       Impact factor: 46.297

7.  Distribution of 5-hydroxymethylcytosine in different human tissues.

Authors:  Weiwei Li; Min Liu
Journal:  J Nucleic Acids       Date:  2011-06-09

8.  Tissue distribution of 5-hydroxymethylcytosine and search for active demethylation intermediates.

Authors:  Daniel Globisch; Martin Münzel; Markus Müller; Stylianos Michalakis; Mirko Wagner; Susanne Koch; Tobias Brückl; Martin Biel; Thomas Carell
Journal:  PLoS One       Date:  2010-12-23       Impact factor: 3.240

9.  The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain.

Authors:  Skirmantas Kriaucionis; Nathaniel Heintz
Journal:  Science       Date:  2009-04-16       Impact factor: 47.728

10.  Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification.

Authors:  Shinsuke Ito; Ana C D'Alessio; Olena V Taranova; Kwonho Hong; Lawrence C Sowers; Yi Zhang
Journal:  Nature       Date:  2010-08-26       Impact factor: 49.962

  10 in total
  13 in total

Review 1.  Analysis of DNA modifications in aging research.

Authors:  Dustin R Masser; Niran Hadad; Hunter Porter; Michael B Stout; Archana Unnikrishnan; David R Stanford; Willard M Freeman
Journal:  Geroscience       Date:  2018-01-11       Impact factor: 7.713

Review 2.  Regulation of transposable elements by DNA modifications.

Authors:  Özgen Deniz; Jennifer M Frost; Miguel R Branco
Journal:  Nat Rev Genet       Date:  2019-07       Impact factor: 53.242

3.  Detection of Modified Forms of Cytosine Using Sensitive Immunohistochemistry.

Authors:  Abdulkadir Abakir; Lee Wheldon; Andrew D Johnson; Patrick Laurent; Alexey Ruzov
Journal:  J Vis Exp       Date:  2016-08-16       Impact factor: 1.355

4.  Age-dependent levels of 5-methyl-, 5-hydroxymethyl-, and 5-formylcytosine in human and mouse brain tissues.

Authors:  Mirko Wagner; Jessica Steinbacher; Theo F J Kraus; Stylianos Michalakis; Benjamin Hackner; Toni Pfaffeneder; Arshan Perera; Markus Müller; Armin Giese; Hans A Kretzschmar; Thomas Carell
Journal:  Angew Chem Int Ed Engl       Date:  2015-07-03       Impact factor: 15.336

5.  A B-cell targeting virus disrupts potentially protective genomic methylation patterns in lymphoid tissue by increasing global 5-hydroxymethylcytosine levels.

Authors:  Nick A Ciccone; William Mwangi; Alexey Ruzov; Lorraine P Smith; Colin Butter; Venugopal Nair
Journal:  Vet Res       Date:  2014-10-23       Impact factor: 3.683

Review 6.  ZF-CxxC domain-containing proteins, CpG islands and the chromatin connection.

Authors:  Hannah K Long; Neil P Blackledge; Robert J Klose
Journal:  Biochem Soc Trans       Date:  2013-06       Impact factor: 5.407

7.  5-Carboxylcytosine is localized to euchromatic regions in the nuclei of follicular cells in axolotl ovary.

Authors:  Anthony Alioui; Lee M Wheldon; Abdulkadir Abakir; Zoltan Ferjentsik; Andrew D Johnson; Alexey Ruzov
Journal:  Nucleus       Date:  2012-11-01       Impact factor: 4.197

8.  5-Carboxylcytosine levels are elevated in human breast cancers and gliomas.

Authors:  Maria Eleftheriou; Ana Jimenez Pascual; Lee M Wheldon; Christina Perry; Abdulkadir Abakir; Arvind Arora; Andrew D Johnson; Dorothee T Auer; Ian O Ellis; Srinivasan Madhusudan; Alexey Ruzov
Journal:  Clin Epigenetics       Date:  2015-08-21       Impact factor: 6.551

9.  Planarian MBD2/3 is required for adult stem cell pluripotency independently of DNA methylation.

Authors:  Farah Jaber-Hijazi; Priscilla J K P Lo; Yuliana Mihaylova; Jeremy M Foster; Jack S Benner; Belen Tejada Romero; Chen Chen; Sunir Malla; Jordi Solana; Alexey Ruzov; A Aziz Aboobaker
Journal:  Dev Biol       Date:  2013-09-21       Impact factor: 3.582

10.  Dynamic changes in DNA modification states during late gestation male germ line development in the rat.

Authors:  Catherine M Rose; Sander van den Driesche; Richard M Sharpe; Richard R Meehan; Amanda J Drake
Journal:  Epigenetics Chromatin       Date:  2014-08-07       Impact factor: 4.954

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