Literature DB >> 22387026

Histone H3 lysine 56 methylation regulates DNA replication through its interaction with PCNA.

Yongxin Yu1, Chunying Song, Qiongyi Zhang, Peter A DiMaggio, Benjamin A Garcia, Autumn York, Michael F Carey, Michael Grunstein.   

Abstract

Histone modifications play important roles in regulating DNA-based biological processes. Of the modified sites, histone H3 lysine 56 (H3K56) is unique in that it lies within the globular core domain near the entry-exit sites of the nucleosomal DNA superhelix and its acetylation state in yeast is a marker for newly synthesized histones in transcription, DNA repair, and DNA replication. We now report the presence of H3K56 monomethylation (H3K56me1) in mammalian cells and find that the histone lysine methytransferase G9a/KMT1C is required for H3K56me1 both in vivo and in vitro. We also find that disruption of G9a or H3K56 impairs DNA replication. Furthermore, H3K56me1 associates with the replication processivity factor PCNA primarily in G1 phase of the cell cycle and, directly, in vitro. These results find H3K56me1 in mammals and indicate a role for H3K56me1 as a chromatin docking site for PCNA prior to its function in DNA replication.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22387026      PMCID: PMC3327800          DOI: 10.1016/j.molcel.2012.01.019

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  42 in total

1.  Partitioning and plasticity of repressive histone methylation states in mammalian chromatin.

Authors:  Antoine H F M Peters; Stefan Kubicek; Karl Mechtler; Roderick J O'Sullivan; Alwin A H A Derijck; Laura Perez-Burgos; Alexander Kohlmaier; Susanne Opravil; Makoto Tachibana; Yoichi Shinkai; Joost H A Martens; Thomas Jenuwein
Journal:  Mol Cell       Date:  2003-12       Impact factor: 17.970

2.  A role for cell-cycle-regulated histone H3 lysine 56 acetylation in the DNA damage response.

Authors:  Hiroshi Masumoto; David Hawke; Ryuji Kobayashi; Alain Verreault
Journal:  Nature       Date:  2005-07-14       Impact factor: 49.962

Review 3.  PCNA, the maestro of the replication fork.

Authors:  George-Lucian Moldovan; Boris Pfander; Stefan Jentsch
Journal:  Cell       Date:  2007-05-18       Impact factor: 41.582

Review 4.  The DNA replication fork in eukaryotic cells.

Authors:  S Waga; B Stillman
Journal:  Annu Rev Biochem       Date:  1998       Impact factor: 23.643

5.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

6.  The use of conditional lethal cell cycle mutants for temporal and functional sequence mapping of cell cycle events.

Authors:  J R Pringle
Journal:  J Cell Physiol       Date:  1978-06       Impact factor: 6.384

7.  Direct observation of individual endogenous protein complexes in situ by proximity ligation.

Authors:  Ola Söderberg; Mats Gullberg; Malin Jarvius; Karin Ridderstråle; Karl-Johan Leuchowius; Jonas Jarvius; Kenneth Wester; Per Hydbring; Fuad Bahram; Lars-Gunnar Larsson; Ulf Landegren
Journal:  Nat Methods       Date:  2006-10-29       Impact factor: 28.547

8.  Histone H1 variant-specific lysine methylation by G9a/KMT1C and Glp1/KMT1D.

Authors:  Thomas Weiss; Sonja Hergeth; Ulrike Zeissler; Annalisa Izzo; Philipp Tropberger; Barry M Zee; Miroslav Dundr; Benjamin A Garcia; Sylvain Daujat; Robert Schneider
Journal:  Epigenetics Chromatin       Date:  2010-03-24       Impact factor: 4.954

9.  One-pot shotgun quantitative mass spectrometry characterization of histones.

Authors:  Mariana D Plazas-Mayorca; Barry M Zee; Nicolas L Young; Ian M Fingerman; Gary LeRoy; Scott D Briggs; Benjamin A Garcia
Journal:  J Proteome Res       Date:  2009-11       Impact factor: 4.466

10.  Protein lysine methyltransferase G9a acts on non-histone targets.

Authors:  Philipp Rathert; Arunkumar Dhayalan; Marie Murakami; Xing Zhang; Raluca Tamas; Renata Jurkowska; Yasuhiko Komatsu; Yoichi Shinkai; Xiaodong Cheng; Albert Jeltsch
Journal:  Nat Chem Biol       Date:  2008-04-27       Impact factor: 15.040

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  59 in total

Review 1.  Functional Crosstalk Between Lysine Methyltransferases on Histone Substrates: The Case of G9A/GLP and Polycomb Repressive Complex 2.

Authors:  Chiara Mozzetta; Julien Pontis; Slimane Ait-Si-Ali
Journal:  Antioxid Redox Signal       Date:  2014-12-19       Impact factor: 8.401

2.  A Role for Widely Interspaced Zinc Finger (WIZ) in Retention of the G9a Methyltransferase on Chromatin.

Authors:  Jeremy M Simon; Joel S Parker; Feng Liu; Scott B Rothbart; Slimane Ait-Si-Ali; Brian D Strahl; Jian Jin; Ian J Davis; Amber L Mosley; Samantha G Pattenden
Journal:  J Biol Chem       Date:  2015-09-03       Impact factor: 5.157

3.  Cell cycle-dependent changes in H3K56ac in human cells.

Authors:  Stanislav Stejskal; Karel Stepka; Lenka Tesarova; Karel Stejskal; Martina Matejkova; Pavel Simara; Zbynek Zdrahal; Irena Koutna
Journal:  Cell Cycle       Date:  2015       Impact factor: 4.534

4.  Differential expression of glycoprotein non-metastatic melanoma protein B (GPNMB) involved in trichostatin A-induced apoptosis in gastric cancer.

Authors:  Wei-Min Ruan; Yun-Long Li; Gang Nie; Wen-Xue Zhou; Xiao-Ming Zou
Journal:  Int J Clin Exp Med       Date:  2014-12-15

5.  Quantitative proteomics reveals histone modifications in crosstalk with H3 lysine 27 methylation.

Authors:  Chunchao Zhang; Shan Gao; Anthony J Molascon; Yifan Liu; Philip C Andrews
Journal:  Mol Cell Proteomics       Date:  2014-01-01       Impact factor: 5.911

6.  Histone lysine demethylase (KDM) subfamily 4: structures, functions and therapeutic potential.

Authors:  Roselyne M Labbé; Andreana Holowatyj; Zeng-Quan Yang
Journal:  Am J Transl Res       Date:  2013-12-01       Impact factor: 4.060

7.  Scratching the (lateral) surface of chromatin regulation by histone modifications.

Authors:  Philipp Tropberger; Robert Schneider
Journal:  Nat Struct Mol Biol       Date:  2013-06-05       Impact factor: 15.369

Review 8.  SET for life: biochemical activities and biological functions of SET domain-containing proteins.

Authors:  Hans-Martin Herz; Alexander Garruss; Ali Shilatifard
Journal:  Trends Biochem Sci       Date:  2013-10-20       Impact factor: 13.807

9.  Identification of proteins at active, stalled, and collapsed replication forks using isolation of proteins on nascent DNA (iPOND) coupled with mass spectrometry.

Authors:  Bianca M Sirbu; W Hayes McDonald; Huzefa Dungrawala; Akosua Badu-Nkansah; Gina M Kavanaugh; Yaoyi Chen; David L Tabb; David Cortez
Journal:  J Biol Chem       Date:  2013-09-18       Impact factor: 5.157

10.  A small molecule inhibitor of fungal histone acetyltransferase Rtt109.

Authors:  Jessica Lopes da Rosa; Vineeta Bajaj; James Spoonamore; Paul D Kaufman
Journal:  Bioorg Med Chem Lett       Date:  2013-04-04       Impact factor: 2.823

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