Literature DB >> 22382498

Deciphering the molecular basis of human cardiovascular disease through network biology.

Stephen Y Chan1, Kevin White, Joseph Loscalzo.   

Abstract

PURPOSE OF REVIEW: This review introduces the fundamental concepts of network medicine and explores the feasibility and potential impact of network-based methods on predicting and ameliorating individual manifestations of human cardiovascular disease. RECENT
FINDINGS: Complex cardiovascular diseases rarely result from an abnormality in a single molecular effector, but, rather, nearly always are the net result of multiple pathobiological pathways that interact through an interconnected network. In the postgenomic era, a framework has emerged of the potential complexity of the interacting pathways that govern molecular actions in the human cell. As a result, network approaches have been developed to understand more comprehensively those interconnections that influence human disease. 'Network medicine' has already led to tangible discoveries of novel disease genes and pathways as well as improved mechanisms for rational drug development.
SUMMARY: As methodologies evolve, network medicine may better capture the complexity of human pathogenesis and, thus, re-define personalized disease classification and therapies.

Entities:  

Mesh:

Year:  2012        PMID: 22382498      PMCID: PMC3521498          DOI: 10.1097/HCO.0b013e3283515b31

Source DB:  PubMed          Journal:  Curr Opin Cardiol        ISSN: 0268-4705            Impact factor:   2.161


  30 in total

1.  Identification of inflammatory gene modules based on variations of human endothelial cell responses to oxidized lipids.

Authors:  Peter S Gargalovic; Minori Imura; Bin Zhang; Nima M Gharavi; Michael J Clark; Joanne Pagnon; Wen-Pin Yang; Aiqing He; Amy Truong; Shilpa Patel; Stanley F Nelson; Steve Horvath; Judith A Berliner; Todd G Kirchgessner; Aldons J Lusis
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-15       Impact factor: 11.205

2.  Identification of pathways for atherosclerosis in mice: integration of quantitative trait locus analysis and global gene expression data.

Authors:  Susanna S Wang; Eric E Schadt; Hui Wang; Xuping Wang; Leslie Ingram-Drake; Weibin Shi; Thomas A Drake; Aldons J Lusis
Journal:  Circ Res       Date:  2007-07-19       Impact factor: 17.367

3.  The human disease network.

Authors:  Kwang-Il Goh; Michael E Cusick; David Valle; Barton Childs; Marc Vidal; Albert-László Barabási
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-14       Impact factor: 11.205

4.  Drug target identification using side-effect similarity.

Authors:  Monica Campillos; Michael Kuhn; Anne-Claude Gavin; Lars Juhl Jensen; Peer Bork
Journal:  Science       Date:  2008-07-11       Impact factor: 47.728

5.  MicroRNA-21 integrates pathogenic signaling to control pulmonary hypertension: results of a network bioinformatics approach.

Authors:  Victoria N Parikh; Richard C Jin; Sabrina Rabello; Natali Gulbahce; Kevin White; Andrew Hale; Katherine A Cottrill; Rahamthulla S Shaik; Aaron B Waxman; Ying-Yi Zhang; Bradley A Maron; Jochen C Hartner; Yuko Fujiwara; Stuart H Orkin; Kathleen J Haley; Albert-László Barabási; Joseph Loscalzo; Stephen Y Chan
Journal:  Circulation       Date:  2012-02-27       Impact factor: 29.690

6.  Network analysis of human in-stent restenosis.

Authors:  Euan A Ashley; Rossella Ferrara; Jennifer Y King; Aditya Vailaya; Allan Kuchinsky; Xuanmin He; Blake Byers; Ulrich Gerckens; Stefan Oblin; Anya Tsalenko; Angela Soito; Joshua M Spin; Raymond Tabibiazar; Andrew J Connolly; John B Simpson; Eberhard Grube; Thomas Quertermous
Journal:  Circulation       Date:  2006-12-04       Impact factor: 29.690

7.  High-quality binary protein interaction map of the yeast interactome network.

Authors:  Haiyuan Yu; Pascal Braun; Muhammed A Yildirim; Irma Lemmens; Kavitha Venkatesan; Julie Sahalie; Tomoko Hirozane-Kishikawa; Fana Gebreab; Na Li; Nicolas Simonis; Tong Hao; Jean-François Rual; Amélie Dricot; Alexei Vazquez; Ryan R Murray; Christophe Simon; Leah Tardivo; Stanley Tam; Nenad Svrzikapa; Changyu Fan; Anne-Sophie de Smet; Adriana Motyl; Michael E Hudson; Juyong Park; Xiaofeng Xin; Michael E Cusick; Troy Moore; Charlie Boone; Michael Snyder; Frederick P Roth; Albert-László Barabási; Jan Tavernier; David E Hill; Marc Vidal
Journal:  Science       Date:  2008-08-21       Impact factor: 47.728

8.  Human disease classification in the postgenomic era: a complex systems approach to human pathobiology.

Authors:  Joseph Loscalzo; Isaac Kohane; Albert-Laszlo Barabasi
Journal:  Mol Syst Biol       Date:  2007-07-10       Impact factor: 11.429

9.  Transcriptional profiling uncovers a network of cholesterol-responsive atherosclerosis target genes.

Authors:  Josefin Skogsberg; Jesper Lundström; Alexander Kovacs; Roland Nilsson; Peri Noori; Shohreh Maleki; Marina Köhler; Anders Hamsten; Jesper Tegnér; Johan Björkegren
Journal:  PLoS Genet       Date:  2008-03-14       Impact factor: 5.917

10.  GraphWeb: mining heterogeneous biological networks for gene modules with functional significance.

Authors:  Jüri Reimand; Laur Tooming; Hedi Peterson; Priit Adler; Jaak Vilo
Journal:  Nucleic Acids Res       Date:  2008-05-06       Impact factor: 16.971

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  16 in total

Review 1.  Epigenetics: novel mechanism of pulmonary hypertension.

Authors:  Jing-bin Huang; Jian Liang; Xiao-fang Zhao; Wen-sen Wu; Fu Zhang
Journal:  Lung       Date:  2013-09-20       Impact factor: 2.584

Review 2.  The emerging paradigm of network medicine in the study of human disease.

Authors:  Stephen Y Chan; Joseph Loscalzo
Journal:  Circ Res       Date:  2012-07-20       Impact factor: 17.367

Review 3.  Beyond single-nucleotide polymorphisms: genetics, genomics, and other 'omic approaches to acute respiratory distress syndrome.

Authors:  Nuala J Meyer
Journal:  Clin Chest Med       Date:  2014-09-23       Impact factor: 2.878

4.  Systems analysis of oxidant stress in the vasculature.

Authors:  Diane E Handy; Joseph Loscalzo; Jane A Leopold
Journal:  IUBMB Life       Date:  2013-11-07       Impact factor: 3.885

Review 5.  Network medicine in Cardiovascular Research.

Authors:  Laurel Y Lee; Arvind K Pandey; Bradley A Maron; Joseph Loscalzo
Journal:  Cardiovasc Res       Date:  2021-08-29       Impact factor: 10.787

Review 6.  Integrative Omics to Characterize and Classify Pulmonary Vascular Disease.

Authors:  Jane A Leopold; Anna R Hemnes
Journal:  Clin Chest Med       Date:  2021-01-12       Impact factor: 2.878

7.  Holding our breath: The emerging and anticipated roles of microRNA in pulmonary hypertension.

Authors:  Kevin White; Joseph Loscalzo; Stephen Y Chan
Journal:  Pulm Circ       Date:  2012-07       Impact factor: 3.017

8.  Human growth is associated with distinct patterns of gene expression in evolutionarily conserved networks.

Authors:  Adam Stevens; Daniel Hanson; Andrew Whatmore; Benoit Destenaves; Pierre Chatelain; Peter Clayton
Journal:  BMC Genomics       Date:  2013-08-13       Impact factor: 3.969

9.  Nodes and biological processes identified on the basis of network analysis in the brain of the senescence accelerated mice as an Alzheimer's disease animal model.

Authors:  Xiao-Rui Cheng; Xiu-Liang Cui; Yue Zheng; Gui-Rong Zhang; Peng Li; Huang Huang; Yue-Ying Zhao; Xiao-Chen Bo; Sheng-Qi Wang; Wen-Xia Zhou; Yong-Xiang Zhang
Journal:  Front Aging Neurosci       Date:  2013-10-29       Impact factor: 5.750

Review 10.  Survey of network-based approaches to research of cardiovascular diseases.

Authors:  Anida Sarajlić; Nataša Pržulj
Journal:  Biomed Res Int       Date:  2014-03-20       Impact factor: 3.411

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