Literature DB >> 22374960

Draft genome sequence of Clostridium sporogenes PA 3679, the common nontoxigenic surrogate for proteolytic Clostridium botulinum.

Mark Bradbury1, Paul Greenfield, David Midgley, Dongmei Li, Nai Tran-Dinh, Frank Vriesekoop, Janelle L Brown.   

Abstract

Clostridium sporogenes PA 3679 is widely used as a nontoxigenic surrogate for proteolytic strains of Clostridium botulinum in the derivation and validation of thermal processes in food. Here we report the draft assembly and annotation of the C. sporogenes PA 3679 genome. Preliminary analysis demonstrates a high degree of relatedness between C. sporogenes PA 3679 and sequenced strains of proteolytic C. botulinum.

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Year:  2012        PMID： 22374960      PMCID： PMC3294828          DOI： 10.1128/JB.06765-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  5 in total

1.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

2.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

Review 3.  Clostridium sporogenes PA 3679 and its uses in the derivation of thermal processing schedules for low-acid shelf-stable foods and as a research model for proteolytic Clostridium botulinum.

Authors:  Janelle L Brown; Nai Tran-Dinh; Belinda Chapman
Journal:  J Food Prot       Date:  2012-04       Impact factor: 2.077

4.  Phylogenetic analysis of Clostridium botulinum type A by multi-locus sequence typing.

Authors:  Mark J Jacobson; Guangyun Lin; Thomas S Whittam; Eric A Johnson
Journal:  Microbiology       Date:  2008-08       Impact factor: 2.777

5.  Analysis of the unexplored features of rrs (16S rDNA) of the Genus Clostridium.

Authors:  Vipin Chandra Kalia; Tanmoy Mukherjee; Ashish Bhushan; Jayadev Joshi; Pratap Shankar; Nusrat Huma
Journal:  BMC Genomics       Date:  2011-01-11       Impact factor: 3.969
  5 in total
  12 in total

1.  Implications of Genome-Based Discrimination between Clostridium botulinum Group I and Clostridium sporogenes Strains for Bacterial Taxonomy.

Authors:  Michael R Weigand; Angela Pena-Gonzalez; Timothy B Shirey; Robin G Broeker; Maliha K Ishaq; Konstantinos T Konstantinidis; Brian H Raphael
Journal:  Appl Environ Microbiol       Date:  2015-06-05       Impact factor: 4.792

2.  Genetic Diversity of Clostridium sporogenes PA 3679 Isolates Obtained from Different Sources as Resolved by Pulsed-Field Gel Electrophoresis and High-Throughput Sequencing.

Authors:  Kristin M Schill; Yun Wang; Robert R Butler; Jean-François Pombert; N Rukma Reddy; Guy E Skinner; John W Larkin
Journal:  Appl Environ Microbiol       Date:  2015-10-30       Impact factor: 4.792

3.  Genomic Epidemiology of Clostridium botulinum Isolates from Temporally Related Cases of Infant Botulism in New South Wales, Australia.

Authors:  Nadine McCallum; Timothy J Gray; Qinning Wang; Jimmy Ng; Leanne Hicks; Trang Nguyen; Marion Yuen; Grant A Hill-Cawthorne; Vitali Sintchenko
Journal:  J Clin Microbiol       Date:  2015-06-24       Impact factor: 5.948

4.  Apertures in the Clostridium sporogenes spore coat and exosporium align to facilitate emergence of the vegetative cell.

Authors:  Jason Brunt; Kathryn L Cross; Michael W Peck
Journal:  Food Microbiol       Date:  2015-05-09       Impact factor: 5.516

5.  Complete Genome Sequence of the Nonpathogenic Soil-Dwelling Bacterium Clostridium sporogenes Strain NCIMB 10696.

Authors:  Aleksandra M Kubiak; Anja Poehlein; Patrick Budd; Sarah A Kuehne; Klaus Winzer; Jan Theys; Philip Lambin; Rolf Daniel; Nigel P Minton
Journal:  Genome Announc       Date:  2015-08-20

6.  Draft Genome Sequence of Clostridium sporogenes Strain UC9000 Isolated from Raw Milk.

Authors:  Angela La Torre; Daniela Bassi; Teresa Zotta; Luigi Orrù; Antonella Lamontanara; Pier Sandro Cocconcelli
Journal:  Genome Announc       Date:  2016-04-14

7.  Diversity of the Germination Apparatus in Clostridium botulinum Groups I, II, III, and IV.

Authors:  Jason Brunt; Arnoud H M van Vliet; Fédor van den Bos; Andrew T Carter; Michael W Peck
Journal:  Front Microbiol       Date:  2016-10-28       Impact factor: 5.640

8.  Genome sequence of Clostridium sporogenes DSM 795(T), an amino acid-degrading, nontoxic surrogate of neurotoxin-producing Clostridium botulinum.

Authors:  Anja Poehlein; Karin Riegel; Sandra M König; Andreas Leimbach; Rolf Daniel; Peter Dürre
Journal:  Stand Genomic Sci       Date:  2015-07-21

9.  First Complete Genome Sequence of Clostridium sporogenes DSM 795T, a Nontoxigenic Surrogate for Clostridium botulinum, Determined Using PacBio Single-Molecule Real-Time Technology.

Authors:  Kazuma Nakano; Yasunobu Terabayashi; Akino Shiroma; Makiko Shimoji; Hinako Tamotsu; Noriko Ashimine; Shun Ohki; Misuzu Shinzato; Kuniko Teruya; Kazuhito Satou; Takashi Hirano
Journal:  Genome Announc       Date:  2015-07-30

10.  Functional characterisation of germinant receptors in Clostridium botulinum and Clostridium sporogenes presents novel insights into spore germination systems.

Authors:  Jason Brunt; June Plowman; Duncan J H Gaskin; Manoa Itchner; Andrew T Carter; Michael W Peck
Journal:  PLoS Pathog       Date:  2014-09-11       Impact factor: 6.823
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