Literature DB >> 22372746

Nanosystem self-assembly pathways discovered via all-atom multiscale analysis.

Stephen D Pankavich1, Peter J Ortoleva.   

Abstract

We consider the self-assembly of composite structures from a group of nanocomponents, each consisting of particles within an N-atom system. Self-assembly pathways and rates for nanocomposites are derived via a multiscale analysis of the classical Liouville equation. From a reduced statistical framework, rigorous stochastic equations for population levels of beginning, intermediate, and final aggregates are also derived. It is shown that the definition of an assembly type is a self-consistency criterion that must strike a balance between precision and the need for population levels to be slowly varying relative to the time scale of atomic motion. The deductive multiscale approach is complemented by a qualitative notion of multicomponent association and the ensemble of exact atomic-level configurations consistent with them. In processes such as viral self-assembly from proteins and RNA or DNA, there are many possible intermediates, so that it is usually difficult to predict the most efficient assembly pathway. However, in the current study, rates of assembly of each possible intermediate can be predicted. This avoids the need, as in a phenomenological approach, for recalibration with each new application. The method accounts for the feedback across scales in space and time that is fundamental to nanosystem self-assembly. The theory has applications to bionanostructures, geomaterials, engineered composites, and nanocapsule therapeutic delivery systems.

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Year:  2012        PMID: 22372746      PMCID: PMC3406252          DOI: 10.1021/jp210407e

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  19 in total

1.  Forming electrical networks in three dimensions by self-assembly

Authors: 
Journal:  Science       Date:  2000-08-18       Impact factor: 47.728

2.  Self-assembly at all scales.

Authors:  George M Whitesides; Bartosz Grzybowski
Journal:  Science       Date:  2002-03-29       Impact factor: 47.728

Review 3.  How does your virus grow? Understanding and interfering with virus assembly.

Authors:  Adam Zlotnick; Stephen J Stray
Journal:  Trends Biotechnol       Date:  2003-12       Impact factor: 19.536

4.  Multiscaling for systems with a broad continuum of characteristic lengths and times: Structural transitions in nanocomposites.

Authors:  S Pankavich; P Ortoleva
Journal:  J Math Phys       Date:  2010-06-28       Impact factor: 1.488

5.  Viral structural transitions: an all-atom multiscale theory.

Authors:  Yinglong Miao; Peter J Ortoleva
Journal:  J Chem Phys       Date:  2006-12-07       Impact factor: 3.488

6.  Stability and dynamics of virus capsids described by coarse-grained modeling.

Authors:  Anton Arkhipov; Peter L Freddolino; Klaus Schulten
Journal:  Structure       Date:  2006-12       Impact factor: 5.006

7.  Stochastic dynamics of bionanosystems: Multiscale analysis and specialized ensembles.

Authors:  S Pankavich; Y Miao; J Ortoleva; Z Shreif; P Ortoleva
Journal:  J Chem Phys       Date:  2008-06-21       Impact factor: 3.488

8.  Liquid-crystal transitions: a first-principles multiscale approach.

Authors:  Z Shreif; S Pankavich; P Ortoleva
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-09-10

9.  Multiscale simulation of transmembrane proteins.

Authors:  Gary S Ayton; Gregory A Voth
Journal:  J Struct Biol       Date:  2006-10-27       Impact factor: 2.867

10.  Mechanism of capsid assembly for an icosahedral plant virus.

Authors:  A Zlotnick; R Aldrich; J M Johnson; P Ceres; M J Young
Journal:  Virology       Date:  2000-11-25       Impact factor: 3.616

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