Literature DB >> 22372542

Leishmania major peroxidase is a cytochrome c peroxidase.

Victoria S Jasion1, Thomas L Poulos.   

Abstract

Leishmania major peroxidase (LmP) exhibits both ascorbate and cytochrome c peroxidase activities. Our previous results illustrated that LmP has a much higher activity against horse heart cytochrome c than ascorbate, suggesting that cytochrome c may be the biologically important substrate. To elucidate the biological function of LmP, we have recombinantly expressed, purified, and determined the 2.08 Å crystal structure of L. major cytochrome c (LmCytc). Like other types of cytochrome c, LmCytc has an electropositive surface surrounding the exposed heme edge that serves as the site of docking with redox partners. Kinetic assays performed with LmCytc and LmP show that LmCytc is a much better substrate for LmP than horse heart cytochrome c. Furthermore, unlike the well-studied yeast system, the reaction follows classic Michaelis-Menten kinetics and is sensitive to an increasing ionic strength. Using the yeast cocrystal as a control, protein-protein docking was performed using Rosetta to develop a model for the binding of LmP and LmCytc. These results suggest that the biological function of LmP is to act as a cytochrome c peroxidase.

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Year:  2012        PMID: 22372542      PMCID: PMC3799847          DOI: 10.1021/bi300169x

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  33 in total

1.  Conversion of an engineered potassium-binding site into a calcium-selective site in cytochrome c peroxidase.

Authors:  C A Bonagura; B Bhaskar; M Sundaramoorthy; T L Poulos
Journal:  J Biol Chem       Date:  1999-12-31       Impact factor: 5.157

2.  The effects of an engineered cation site on the structure, activity, and EPR properties of cytochrome c peroxidase.

Authors:  C A Bonagura; M Sundaramoorthy; B Bhaskar; T L Poulos
Journal:  Biochemistry       Date:  1999-04-27       Impact factor: 3.162

3.  Steady state kinetics and binding of eukaryotic cytochromes c with yeast cytochrome c peroxidase.

Authors:  C H Kang; S Ferguson-Miller; E Margoliash
Journal:  J Biol Chem       Date:  1977-02-10       Impact factor: 5.157

4.  PHENIX: building new software for automated crystallographic structure determination.

Authors:  Paul D Adams; Ralf W Grosse-Kunstleve; Li Wei Hung; Thomas R Ioerger; Airlie J McCoy; Nigel W Moriarty; Randy J Read; James C Sacchettini; Nicholas K Sauter; Thomas C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-10-21

5.  Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations.

Authors:  Jeffrey J Gray; Stewart Moughon; Chu Wang; Ora Schueler-Furman; Brian Kuhlman; Carol A Rohl; David Baker
Journal:  J Mol Biol       Date:  2003-08-01       Impact factor: 5.469

6.  Coot: model-building tools for molecular graphics.

Authors:  Paul Emsley; Kevin Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-11-26

7.  Cation-induced stabilization of the engineered cation-binding loop in cytochrome c peroxidase (CcP).

Authors:  B Bhaskar; Christopher A Bonagura; Huiying Li; Thomas L Poulos
Journal:  Biochemistry       Date:  2002-02-26       Impact factor: 3.162

8.  Crystal structure of a complex between electron transfer partners, cytochrome c peroxidase and cytochrome c.

Authors:  H Pelletier; J Kraut
Journal:  Science       Date:  1992-12-11       Impact factor: 47.728

9.  Electrostatic control of the tryptophan radical in cytochrome c peroxidase.

Authors:  Tiffany P Barrows; B Bhaskar; Thomas L Poulos
Journal:  Biochemistry       Date:  2004-07-13       Impact factor: 3.162

10.  Developments in the CCP4 molecular-graphics project.

Authors:  Liz Potterton; Stuart McNicholas; Eugene Krissinel; Jan Gruber; Kevin Cowtan; Paul Emsley; Garib N Murshudov; Serge Cohen; Anastassis Perrakis; Martin Noble
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-11-26
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  7 in total

1.  Enzymatic Mechanism of Leishmania major Peroxidase and the Critical Role of Specific Ionic Interactions.

Authors:  Georges Chreifi; Scott A Hollingsworth; Huiying Li; Sarvind Tripathi; Anton P Arce; Hugo I Magaña-Garcia; Thomas L Poulos
Journal:  Biochemistry       Date:  2015-05-19       Impact factor: 3.162

Review 2.  Heme enzyme structure and function.

Authors:  Thomas L Poulos
Journal:  Chem Rev       Date:  2014-01-08       Impact factor: 60.622

3.  Insights into the Dynamics and Dissociation Mechanism of a Protein Redox Complex Using Molecular Dynamics.

Authors:  Scott A Hollingsworth; Brian D Nguyen; Georges Chreifi; Anton P Arce; Thomas L Poulos
Journal:  J Chem Inf Model       Date:  2017-09-12       Impact factor: 4.956

Review 4.  Redox metabolism in mitochondria of trypanosomatids.

Authors:  Ana M Tomás; Helena Castro
Journal:  Antioxid Redox Signal       Date:  2012-11-15       Impact factor: 8.401

5.  Crystal structure of the pristine peroxidase ferryl center and its relevance to proton-coupled electron transfer.

Authors:  Georges Chreifi; Elizabeth L Baxter; Tzanko Doukov; Aina E Cohen; Scott E McPhillips; Jinhu Song; Yergalem T Meharenna; S Michael Soltis; Thomas L Poulos
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-19       Impact factor: 11.205

6.  Crystal structure of the Leishmania major peroxidase-cytochrome c complex.

Authors:  Victoria S Jasion; Tzanko Doukov; Stephanie H Pineda; Huiying Li; Thomas L Poulos
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-24       Impact factor: 11.205

7.  Computational analysis of the tryptophan cation radical energetics in peroxidase Compound I.

Authors:  Thomas L Poulos; Jenny S Kim; Vidhi C Murarka
Journal:  J Biol Inorg Chem       Date:  2022-01-21       Impact factor: 3.358

  7 in total

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