Literature DB >> 22367954

Grimontia marina sp. nov., a marine bacterium isolated from the Yellow Sea.

Ahyoung Choi1, Kyung-Mi Kim, Ilnam Kang, Seok-Hyun Youn, Young-Sang Suh, Yoon Lee, Jang-Cheon Cho.   

Abstract

A novel species belonging to the genus Grimontia is described in this study. A Gram-negative, chemoheterotrophic, obligately aerobic, catalase- and oxidase-positive, motile by a single polar flagellum, and rod-shaped bacterium, designated IMCC5001(T), was isolated from surface seawater of the Yellow Sea. Strain IMCC5001(T) grew optimally at 30°C in the presence of 3.5% NaCl. Phylogenetic analysis based on 16S rRNA gene sequences showed that the isolate was related most closely to Grimontia hollisae with a sequence similarity of 95.8%, and formed a robust phyletic lineage with Grimontia hollisae. Differential physiological characteristics between the new strain and Grimontia hollisae KCCM 41680(T) and chemotaxonomic characterization including determination of DNA G+C content, fatty acid methyl esters, quinone composition, and polar lipid profiles justified the assignment of strain IMCC5001(T) to the genus Grimontia as a novel species. In conclusion, strain IMCC5001(T) represents a new species, for which the name Grimontia marina sp. nov. is proposed, with the type strain IMCC5001(T) (=KCTC 22666(T) =NBRC 105794(T)).

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Year:  2012        PMID: 22367954     DOI: 10.1007/s12275-012-1615-6

Source DB:  PubMed          Journal:  J Microbiol        ISSN: 1225-8873            Impact factor:   3.422


  10 in total

1.  ARB: a software environment for sequence data.

Authors:  Wolfgang Ludwig; Oliver Strunk; Ralf Westram; Lothar Richter; Harald Meier; Arno Buchner; Tina Lai; Susanne Steppi; Gangolf Jobb; Wolfram Förster; Igor Brettske; Stefan Gerber; Anton W Ginhart; Oliver Gross; Silke Grumann; Stefan Hermann; Ralf Jost; Andreas König; Thomas Liss; Ralph Lüssmann; Michael May; Björn Nonhoff; Boris Reichel; Robert Strehlow; Alexandros Stamatakis; Norbert Stuckmann; Alexander Vilbig; Michael Lenke; Thomas Ludwig; Arndt Bode; Karl-Heinz Schleifer
Journal:  Nucleic Acids Res       Date:  2004-02-25       Impact factor: 16.971

2.  Puniceicoccus vermicola gen. nov., sp. nov., a novel marine bacterium, and description of Puniceicoccaceae fam. nov., Puniceicoccales ord. nov., Opitutaceae fam. nov., Opitutales ord. nov. and Opitutae classis nov. in the phylum 'Verrucomicrobia'.

Authors:  Yoe-Jin Choo; Kiyoung Lee; Jaeho Song; Jang-Cheon Cho
Journal:  Int J Syst Evol Microbiol       Date:  2007-03       Impact factor: 2.747

3.  EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences.

Authors:  Jongsik Chun; Jae-Hak Lee; Yoonyoung Jung; Myungjin Kim; Seil Kim; Byung Kwon Kim; Young-Woon Lim
Journal:  Int J Syst Evol Microbiol       Date:  2007-10       Impact factor: 2.747

4.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

5.  Evolutionary trees from DNA sequences: a maximum likelihood approach.

Authors:  J Felsenstein
Journal:  J Mol Evol       Date:  1981       Impact factor: 2.395

6.  Parvularcula bermudensis gen. nov., sp. nov., a marine bacterium that forms a deep branch in the alpha-Proteobacteria.

Authors:  Jang-Cheon Cho; Stephen J Giovannoni
Journal:  Int J Syst Evol Microbiol       Date:  2003-07       Impact factor: 2.747

7.  Gaetbulibacter marinus sp. nov., isolated from coastal seawater, and emended description of the genus Gaetbulibacter.

Authors:  Seung-Jo Yang; Jang-Cheon Cho
Journal:  Int J Syst Evol Microbiol       Date:  2008-02       Impact factor: 2.747

8.  Identification of Vibrio hollisae sp. nov. from patients with diarrhea.

Authors:  F W Hickman; J J Farmer; D G Hollis; G R Fanning; A G Steigerwalt; R E Weaver; D J Brenner
Journal:  J Clin Microbiol       Date:  1982-03       Impact factor: 5.948

9.  Reclassification of Vibrio hollisae as Grimontia hollisae gen. nov., comb. nov.

Authors:  Fabiano L Thompson; Bart Hoste; Katrien Vandemeulebroecke; Jean Swings
Journal:  Int J Syst Evol Microbiol       Date:  2003-09       Impact factor: 2.747

10.  SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB.

Authors:  Elmar Pruesse; Christian Quast; Katrin Knittel; Bernhard M Fuchs; Wolfgang Ludwig; Jörg Peplies; Frank Oliver Glöckner
Journal:  Nucleic Acids Res       Date:  2007-10-18       Impact factor: 16.971

  10 in total
  2 in total

1.  Corallibacterium pacifica gen. nov., sp. nov., a Novel Bacterium of the Family Vibrionaceae Isolated from Hard Coral.

Authors:  Sachithra Amarin Hettiarachchi; Su-Jin Lee; Youngdeuk Lee; Young-Kyung Kwon; Kae Kyoung Kwon; Sung-Hyun Yang; Eunyoung Jo; Do-Hyung Kang; Chulhong Oh
Journal:  Curr Microbiol       Date:  2018-02-20       Impact factor: 2.188

2.  Grimontia indica AK16(T), sp. nov., isolated from a seawater sample reports the presence of pathogenic genes similar to Vibrio genus.

Authors:  Aditya Singh; Bhumika Vaidya; Indu Khatri; T N R Srinivas; Srikrishna Subramanian; Suresh Korpole; Anil Kumar Pinnaka
Journal:  PLoS One       Date:  2014-01-21       Impact factor: 3.240

  2 in total

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