Literature DB >> 22367867

Exploring bacterial insertion sequences with ISfinder: objectives, uses, and future developments.

P Siguier1, A Varani, J Perochon, M Chandler.   

Abstract

We describe here the use of the ISfinder database and its associated software. ISfinder was conceived -initially as a comprehensive database for prokaryotic insertion sequences (ISs). It now includes software for visualising complete and partial IS copies in whole genomes (ISbrowser) and for high-quality genome annotation (Insertion Sequence Semi-automatic Genome Annotation).

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Year:  2012        PMID： 22367867     DOI： 10.1007/978-1-61779-603-6_5

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  35 in total

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Authors:  Mireia López-Siles; Michael J McConnell; Antonio J Martín-Galiano
Journal:  Front Microbiol       Date:  2022-05-19       Impact factor: 6.064

5.  Whole-genome comparison between the type strain of Halobacterium salinarum (DSM 3754T ) and the laboratory strains R1 and NRC-1.

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Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-10       Impact factor: 11.205

7.  Emergence of Conjugative IncC Type Plasmid Simultaneously Encoding Resistance to Ciprofloxacin, Ceftriaxone, and Azithromycin in Salmonella.

Authors:  Kaichao Chen; Chen Yang; Edward Waichi Chan; Sheng Chen
Journal:  Antimicrob Agents Chemother       Date:  2021-08-17       Impact factor: 5.191

8.  Sequence analysis of tyrosine recombinases allows annotation of mobile genetic elements in prokaryotic genomes.

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9.  Insights into the physiology and ecology of the brackish-water-adapted Cyanobacterium Nodularia spumigena CCY9414 based on a genome-transcriptome analysis.

Authors:  Björn Voss; Henk Bolhuis; David P Fewer; Matthias Kopf; Fred Möke; Fabian Haas; Rehab El-Shehawy; Paul Hayes; Birgitta Bergman; Kaarina Sivonen; Elke Dittmann; Dave J Scanlan; Martin Hagemann; Lucas J Stal; Wolfgang R Hess
Journal:  PLoS One       Date:  2013-03-28       Impact factor: 3.240

10.  Analysis of tetra- and hepta-nucleotides motifs promoting -1 ribosomal frameshifting in Escherichia coli.

Authors:  Virag Sharma; Marie-Françoise Prère; Isabelle Canal; Andrew E Firth; John F Atkins; Pavel V Baranov; Olivier Fayet
Journal:  Nucleic Acids Res       Date:  2014-05-29       Impact factor: 16.971
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