Literature DB >> 22359320

Multiple imputation for left-censored biomarker data based on Gibbs sampling method.

MinJae Lee1, Lan Kong, Lisa Weissfeld.   

Abstract

Biomarkers, increasingly used in biomedical studies for the diagnosis and prognosis of acute and chronic diseases, provide insight into the effectiveness of treatments and potential pathways that can be used to guide future treatment targets. The measurement of these markers is often limited by the sensitivity of the given assay, resulting in data that are censored either at the lower or at the upper limit of detection. For the Genetic and Inflammatory Markers of Sepsis (GenIMS) study, many different biomarkers were measured to examine the effect of different pathways on the development of sepsis. In this study, the left-censoring of several important inflammatory markers has led to the need for statistical methods that can incorporate this censoring into any analysis of the biomarker data. This paper focuses on the development of multiple imputation methods for the inclusion of multiple left-censored biomarkers in a logistic regression analysis. We assume a multivariate normal distribution to account for the correlations between biomarkers and use the Gibbs sampler for the estimation of the distributional parameters and the imputation of the censored markers. We evaluate and compare the proposed methods with some simple imputation methods through simulation. We use a data set of inflammatory and coagulation markers from the GenIMS study for illustration.
Copyright © 2012 John Wiley & Sons, Ltd.

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Year:  2012        PMID: 22359320     DOI: 10.1002/sim.4503

Source DB:  PubMed          Journal:  Stat Med        ISSN: 0277-6715            Impact factor:   2.373


  11 in total

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2.  Biomarkers in sepsis.

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4.  Estimation of indirect effect when the mediator is a censored variable.

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5.  Pseudo maximum likelihood approach for the analysis of multivariate left-censored longitudinal data.

Authors:  Ghideon Solomon; Lisa Weissfeld
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6.  A latent class based imputation method under Bayesian quantile regression framework using asymmetric Laplace distribution for longitudinal medication usage data with intermittent missing values.

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Journal:  J Biopharm Stat       Date:  2019-11-15       Impact factor: 1.051

Review 7.  How to deal with non-detectable and outlying values in biomarker research: Best practices and recommendations for univariate imputation approaches.

Authors:  Judith Herbers; Robert Miller; Andreas Walther; Lena Schindler; Kornelius Schmidt; Wei Gao; Florian Rupprecht
Journal:  Compr Psychoneuroendocrinol       Date:  2021-03-29

8.  Protocolized Care for Early Septic Shock (ProCESS) statistical analysis plan.

Authors:  Francis Pike; Donald M Yealy; John A Kellum; David T Huang; Amber E Barnato; Tammy L Eaton; Derek C Angus; Lisa A Weissfeld
Journal:  Crit Care Resusc       Date:  2013-12       Impact factor: 2.159

9.  Statistical Methods for Generalized Linear Models with Covariates Subject to Detection Limits.

Authors:  Paul W Bernhardt; Huixia J Wang; Daowen Zhang
Journal:  Stat Biosci       Date:  2015-05

10.  Differential network analysis with multiply imputed lipidomic data.

Authors:  Maiju Kujala; Jaakko Nevalainen; Winfried März; Reijo Laaksonen; Susmita Datta
Journal:  PLoS One       Date:  2015-03-30       Impact factor: 3.240

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