Literature DB >> 22350066

A defined growth medium with very low background carbon for culturing Clostridium thermocellum.

Evert K Holwerda1, Kyle D Hirst, Lee R Lynd.   

Abstract

A growth medium was developed for cultivation of Clostridium thermocellum ATCC 27405 in which "background" carbon present in buffers, reducing agents, chelating agents, and growth factors was a small fraction of the carbon present in the primary growth substrate. Background carbon was 1.6% of primary substrate carbon in the low-carbon (LC) medium, whereas it accounts for at least 40% in previously reported media. Fermentation of cellulose in LC medium was quite similar to Medium for Thermophilic Clostridia (MTC), a commonly used growth medium that contains background carbon at 88% of primary substrate carbon. Of particular note, we found that the organism can readily be cultivated by eliminating some components, lowering the concentrations of others, and employing a tenfold lower concentration of reducing agent. As such, we were able to reduce the amount of background carbon 55-fold compared to MTC medium while reaching the same cell biomass concentration. The final mass ratios of the products acetate:ethanol:formate were 5:3.9:1 for MTC and 4.1:1.5:1 for LC medium. LC medium is expected to facilitate metabolic studies involving identification and quantification of extracellular metabolites. In addition, this medium is expected to be useful in studies of cellulose utilization by anaerobic enrichment cultures obtained from environmental inocula, and in particular to diminish complications arising from metabolism of carbon-containing compounds other than cellulose. Finally, LC medium provides a starting point for industrial growth media development.

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Year:  2012        PMID: 22350066     DOI: 10.1007/s10295-012-1091-3

Source DB:  PubMed          Journal:  J Ind Microbiol Biotechnol        ISSN: 1367-5435            Impact factor:   3.346


  12 in total

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Authors:  R W Fleming; L Y Quinn
Journal:  Appl Microbiol       Date:  1971-05

2.  The Culture and Physiology of a Thermophilic Cellulose-fermenting Bacterium.

Authors:  R H McBee
Journal:  J Bacteriol       Date:  1948-11       Impact factor: 3.490

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Authors:  R H McBEE
Journal:  Bacteriol Rev       Date:  1950-03

4.  Chemically Defined Minimal Medium for Growth of the Anaerobic Cellulolytic Thermophile Clostridium thermocellum.

Authors:  E A Johnson; A Madia; A L Demain
Journal:  Appl Environ Microbiol       Date:  1981-04       Impact factor: 4.792

5.  Characterization of 13 newly isolated strains of anaerobic, cellulolytic, thermophilic bacteria.

Authors:  M Ozkan; S G Desai; Y Zhang; D M Stevenson; J Beane; E A White; M L Guerinot; L R Lynd
Journal:  J Ind Microbiol Biotechnol       Date:  2001-11       Impact factor: 3.346

6.  Carbon and electron flow in Clostridium cellulolyticum grown in chemostat culture on synthetic medium.

Authors:  E Guedon; S Payot; M Desvaux; H Petitdemange
Journal:  J Bacteriol       Date:  1999-05       Impact factor: 3.490

7.  Regulation of cellulase synthesis in batch and continuous cultures of Clostridium thermocellum.

Authors:  Yi-Heng Percival Zhang; Lee R Lynd
Journal:  J Bacteriol       Date:  2005-01       Impact factor: 3.490

8.  Quantification of cell and cellulase mass concentrations during anaerobic cellulose fermentation: development of an enzyme-linked immunosorbent assay-based method with application to Clostridium thermocellum batch cultures.

Authors:  Yiheng Zhang; Lee R Lynd
Journal:  Anal Chem       Date:  2003-01-15       Impact factor: 6.986

9.  Transcriptomic analysis of Clostridium thermocellum ATCC 27405 cellulose fermentation.

Authors:  Babu Raman; Catherine K McKeown; Miguel Rodriguez; Steven D Brown; Jonathan R Mielenz
Journal:  BMC Microbiol       Date:  2011-06-14       Impact factor: 3.605

10.  Impact of pretreated Switchgrass and biomass carbohydrates on Clostridium thermocellum ATCC 27405 cellulosome composition: a quantitative proteomic analysis.

Authors:  Babu Raman; Chongle Pan; Gregory B Hurst; Miguel Rodriguez; Catherine K McKeown; Patricia K Lankford; Nagiza F Samatova; Jonathan R Mielenz
Journal:  PLoS One       Date:  2009-04-22       Impact factor: 3.240

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  26 in total

1.  Improved growth media and culture techniques for genetic analysis and assessment of biomass utilization by Caldicellulosiruptor bescii.

Authors:  Joel Farkas; Daehwan Chung; Minseok Cha; Jennifer Copeland; Philip Grayeski; Janet Westpheling
Journal:  J Ind Microbiol Biotechnol       Date:  2012-11-13       Impact factor: 3.346

2.  Form and function of Clostridium thermocellum biofilms.

Authors:  Alexandru Dumitrache; Gideon Wolfaardt; Grant Allen; Steven N Liss; Lee R Lynd
Journal:  Appl Environ Microbiol       Date:  2012-10-19       Impact factor: 4.792

3.  Influence of organic matters on AsIII oxidation by the microflora of polluted soils.

Authors:  T Lescure; J Moreau; C Charles; T Ben Ali Saanda; H Thouin; N Pillas; P Bauda; I Lamy; F Battaglia-Brunet
Journal:  Environ Geochem Health       Date:  2015-10-01       Impact factor: 4.609

4.  Characterization of Clostridium thermocellum strains with disrupted fermentation end-product pathways.

Authors:  Douwe van der Veen; Jonathan Lo; Steven D Brown; Courtney M Johnson; Timothy J Tschaplinski; Madhavi Martin; Nancy L Engle; Robert A van den Berg; Aaron D Argyros; Nicky C Caiazza; Adam M Guss; Lee R Lynd
Journal:  J Ind Microbiol Biotechnol       Date:  2013-05-05       Impact factor: 3.346

5.  Elimination of formate production in Clostridium thermocellum.

Authors:  Thomas Rydzak; Lee R Lynd; Adam M Guss
Journal:  J Ind Microbiol Biotechnol       Date:  2015-07-11       Impact factor: 3.346

6.  Comparative analysis of the ability of Clostridium clariflavum strains and Clostridium thermocellum to utilize hemicellulose and unpretreated plant material.

Authors:  Javier A Izquierdo; Sivakumar Pattathil; Anna Guseva; Michael G Hahn; Lee R Lynd
Journal:  Biotechnol Biofuels       Date:  2014-11-18       Impact factor: 6.040

7.  The exometabolome of Clostridium thermocellum reveals overflow metabolism at high cellulose loading.

Authors:  Evert K Holwerda; Philip G Thorne; Daniel G Olson; Daniel Amador-Noguez; Nancy L Engle; Timothy J Tschaplinski; Johannes P van Dijken; Lee R Lynd
Journal:  Biotechnol Biofuels       Date:  2014-10-21       Impact factor: 6.040

8.  Rheological properties of corn stover slurries during fermentation by Clostridium thermocellum.

Authors:  Sanchari Ghosh; Evert K Holwerda; Robert S Worthen; Lee R Lynd; Brenden P Epps
Journal:  Biotechnol Biofuels       Date:  2018-09-08       Impact factor: 6.040

9.  Biomass augmentation through thermochemical pretreatments greatly enhances digestion of switchgrass by Clostridium thermocellum.

Authors:  Ninad Kothari; Evert K Holwerda; Charles M Cai; Rajeev Kumar; Charles E Wyman
Journal:  Biotechnol Biofuels       Date:  2018-08-04       Impact factor: 6.040

10.  Cross-feeding and wheat straw extractives enhance growth of Clostridium thermocellum-containing co-cultures for consolidated bioprocessing.

Authors:  Alan G Froese; Richard Sparling
Journal:  Bioprocess Biosyst Eng       Date:  2021-01-03       Impact factor: 3.210

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