Literature DB >> 22347087

2-Ethyl 4-methyl 5-ethyl-3-methyl-1H-pyrrole-2,4-dicarboxyl-ate.

Gui-Fen Lu1, Min Zhu, Wei-Hua Zhu, Zhong-Ping Ou.   

Abstract

The title pyrrole derivative compound, C(12)H(17)NO(4), was synthesized from methyl 3-oxopenta-noate by a Knorr-type reaction and contains a pyrrole ring to which two diagonal alk-oxy-carbonyl groups and two diagonal alkyl substituents are attached. The methyl-carbonyl and ethyl-carbonyl substituents are approximately co-planar with the pyrrole ring, making dihedral angles of 5.64 (2) and 3.44 (1)°, respectively. In the crystal, adjacent mol-ecules are assembled by pairs of N-H⋯O hydrogen bonds into dimers in a head-to-head mode.

Entities:  

Year:  2012        PMID: 22347087      PMCID: PMC3275231          DOI: 10.1107/S1600536812001729

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of polysubstituted pyrroles, see: Brockmann & Tour, (1995 ▶); Guilard et al. (2001 ▶); Trofimov et al. (2004 ▶). For related structures, see: Lu et al. (2011 ▶); Takaya et al. (2001 ▶). For complexes of pyrrole derivatives, see: Fan et al. (2008 ▶); Ou et al. (2009 ▶); Paixão et al. (2003 ▶); Yamamoto et al. (1986 ▶).

Experimental

Crystal data

C12H17NO4 M = 239.27 Triclinic, a = 7.2827 (10) Å b = 8.8573 (12) Å c = 11.1806 (16) Å α = 77.948 (2)° β = 73.135 (2)° γ = 69.970 (2)° V = 643.62 (15) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.15 × 0.12 × 0.06 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2003 ▶) T min = 0.986, T max = 0.995 3249 measured reflections 2255 independent reflections 1891 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.067 wR(F 2) = 0.220 S = 1.11 2255 reflections 159 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.51 e Å−3 Δρmin = −0.36 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812001729/vm2149sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812001729/vm2149Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812001729/vm2149Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H17NO4Z = 2
Mr = 239.27F(000) = 256
Triclinic, P1Dx = 1.235 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.2827 (10) ÅCell parameters from 1663 reflections
b = 8.8573 (12) Åθ = 2.4–26.8°
c = 11.1806 (16) ŵ = 0.09 mm1
α = 77.948 (2)°T = 293 K
β = 73.135 (2)°Sheet, colorless
γ = 69.970 (2)°0.15 × 0.12 × 0.06 mm
V = 643.62 (15) Å3
Bruker APEXII CCD area-detector diffractometer2255 independent reflections
Radiation source: fine-focus sealed tube1891 reflections with I > 2σ(I)
graphiteRint = 0.018
φ and ω scansθmax = 25.0°, θmin = 2.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 2003)h = −8→6
Tmin = 0.986, Tmax = 0.995k = −10→9
3249 measured reflectionsl = −13→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.067H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.220w = 1/[σ2(Fo2) + (0.1366P)2 + 0.1514P] where P = (Fo2 + 2Fc2)/3
S = 1.11(Δ/σ)max < 0.001
2255 reflectionsΔρmax = 0.51 e Å3
159 parametersΔρmin = −0.36 e Å3
1 restraintExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.046 (17)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C100.3898 (4)−0.0962 (3)−0.1197 (2)0.0550 (6)
H10A0.4158−0.2064−0.08080.082*
H10B0.5149−0.0720−0.15530.082*
H10C0.3217−0.0814−0.18490.082*
C110.2132 (4)−0.1884 (3)0.1807 (2)0.0560 (6)
C120.3494 (6)−0.4707 (4)0.1703 (3)0.0963 (11)
H12A0.4249−0.54450.10890.144*
H12B0.2222−0.48990.20980.144*
H12C0.4232−0.48710.23280.144*
O40.3164 (3)−0.3073 (2)0.10932 (18)0.0785 (6)
O30.1512 (4)−0.2162 (3)0.29184 (19)0.0950 (8)
H1A0.020 (3)0.3365 (14)0.079 (2)0.052 (7)*
C10.1913 (3)0.1820 (3)−0.04297 (19)0.0461 (5)
C20.2603 (3)0.0150 (2)−0.02273 (19)0.0439 (5)
C30.1853 (3)−0.0280 (3)0.1078 (2)0.0470 (6)
C40.0707 (3)0.1150 (3)0.1615 (2)0.0491 (6)
C50.2114 (4)0.3014 (3)−0.1527 (2)0.0569 (6)
C60.3253 (8)0.3461 (4)−0.3746 (3)0.1147 (15)
H6A0.19020.4037−0.38520.138*
H6B0.38890.4250−0.37210.138*
C70.4382 (8)0.2543 (6)−0.4772 (3)0.1304 (17)
H7A0.44600.3259−0.55470.196*
H7B0.37300.1779−0.48010.196*
H7C0.57150.1974−0.46590.196*
C8−0.0423 (4)0.1442 (3)0.2940 (2)0.0621 (7)
H8A−0.15650.24090.29210.075*
H8B−0.09400.05400.33440.075*
C90.0830 (5)0.1639 (4)0.3707 (3)0.0857 (9)
H9A0.00280.18230.45420.129*
H9B0.13220.25460.33240.129*
H9C0.19460.06760.37480.129*
N10.0782 (3)0.2382 (2)0.07013 (17)0.0503 (5)
O10.1384 (3)0.4462 (2)−0.15035 (18)0.0821 (7)
O20.3170 (3)0.2368 (2)−0.25857 (16)0.0748 (6)
U11U22U33U12U13U23
C100.0654 (14)0.0407 (12)0.0528 (13)−0.0105 (10)−0.0084 (10)−0.0104 (10)
C110.0628 (13)0.0460 (13)0.0535 (13)−0.0180 (10)−0.0088 (10)0.0016 (10)
C120.130 (3)0.0388 (15)0.097 (2)−0.0178 (16)−0.016 (2)0.0119 (14)
O40.1114 (15)0.0334 (10)0.0680 (12)−0.0114 (9)−0.0062 (11)0.0025 (8)
O30.1393 (19)0.0586 (12)0.0578 (12)−0.0263 (12)0.0044 (12)0.0097 (9)
C10.0501 (11)0.0386 (11)0.0423 (11)−0.0088 (8)−0.0071 (8)−0.0033 (8)
C20.0436 (10)0.0389 (11)0.0467 (11)−0.0113 (9)−0.0087 (8)−0.0047 (8)
C30.0480 (11)0.0404 (11)0.0495 (12)−0.0137 (9)−0.0083 (9)−0.0025 (9)
C40.0478 (11)0.0438 (12)0.0483 (12)−0.0118 (9)−0.0047 (9)−0.0027 (9)
C50.0677 (14)0.0397 (12)0.0484 (13)−0.0075 (10)−0.0055 (10)−0.0003 (9)
C60.183 (4)0.0601 (18)0.0511 (17)−0.014 (2)0.007 (2)0.0112 (14)
C70.186 (4)0.123 (3)0.0515 (19)−0.033 (3)−0.008 (2)0.001 (2)
C80.0667 (14)0.0542 (14)0.0494 (13)−0.0144 (11)0.0032 (11)−0.0029 (10)
C90.104 (2)0.101 (2)0.0500 (15)−0.0386 (19)−0.0048 (14)−0.0093 (15)
N10.0533 (10)0.0370 (10)0.0479 (11)−0.0050 (8)−0.0044 (8)−0.0040 (8)
O10.1135 (15)0.0386 (10)0.0600 (11)−0.0033 (9)0.0023 (10)0.0007 (8)
O20.1088 (14)0.0453 (10)0.0434 (10)−0.0087 (9)0.0013 (9)−0.0001 (7)
C10—C21.500 (3)C4—C81.498 (3)
C10—H10A0.9600C5—O11.211 (3)
C10—H10B0.9600C5—O21.331 (3)
C10—H10C0.9600C6—C71.428 (5)
C11—O31.197 (3)C6—O21.447 (3)
C11—O41.330 (3)C6—H6A0.9700
C11—C31.463 (3)C6—H6B0.9700
C12—O41.436 (3)C7—H7A0.9600
C12—H12A0.9600C7—H7B0.9600
C12—H12B0.9600C7—H7C0.9600
C12—H12C0.9600C8—C91.491 (4)
C1—N11.380 (3)C8—H8A0.9700
C1—C21.381 (3)C8—H8B0.9700
C1—C51.451 (3)C9—H9A0.9600
C2—C31.422 (3)C9—H9B0.9600
C3—C41.401 (3)C9—H9C0.9600
C4—N11.335 (3)N1—H1A0.839 (10)
C2—C10—H10A109.5O2—C5—C1113.5 (2)
C2—C10—H10B109.5C7—C6—O2108.8 (3)
H10A—C10—H10B109.5C7—C6—H6A109.9
C2—C10—H10C109.5O2—C6—H6A109.9
H10A—C10—H10C109.5C7—C6—H6B109.9
H10B—C10—H10C109.5O2—C6—H6B109.9
O3—C11—O4121.4 (2)H6A—C6—H6B108.3
O3—C11—C3126.0 (2)C6—C7—H7A109.5
O4—C11—C3112.6 (2)C6—C7—H7B109.5
O4—C12—H12A109.5H7A—C7—H7B109.5
O4—C12—H12B109.5C6—C7—H7C109.5
H12A—C12—H12B109.5H7A—C7—H7C109.5
O4—C12—H12C109.5H7B—C7—H7C109.5
H12A—C12—H12C109.5C9—C8—C4113.3 (2)
H12B—C12—H12C109.5C9—C8—H8A108.9
C11—O4—C12117.6 (2)C4—C8—H8A108.9
N1—C1—C2108.30 (19)C9—C8—H8B108.9
N1—C1—C5117.4 (2)C4—C8—H8B108.9
C2—C1—C5134.3 (2)H8A—C8—H8B107.7
C1—C2—C3105.90 (18)C8—C9—H9A109.5
C1—C2—C10126.4 (2)C8—C9—H9B109.5
C3—C2—C10127.7 (2)H9A—C9—H9B109.5
C4—C3—C2107.89 (19)C8—C9—H9C109.5
C4—C3—C11122.8 (2)H9A—C9—H9C109.5
C2—C3—C11129.3 (2)H9B—C9—H9C109.5
N1—C4—C3107.36 (19)C4—N1—C1110.53 (19)
N1—C4—C8121.0 (2)C4—N1—H1A125.5 (17)
C3—C4—C8131.6 (2)C1—N1—H1A124.0 (17)
O1—C5—O2122.4 (2)C5—O2—C6117.1 (2)
O1—C5—C1124.1 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O1i0.84 (1)2.07 (1)2.883 (3)165 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O1i0.84 (1)2.07 (1)2.883 (3)165 (2)

Symmetry code: (i) .

  7 in total

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2.  A short history of SHELX.

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3.  Rhodium complex-catalyzed reaction of isonitriles with carbonyl compounds: catalytic synthesis of pyrroles.

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Review 5.  Lamellarins and related pyrrole-derived alkaloids from marine organisms.

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Authors:  Manuela Ramos Silva; Ana Matos Beja; Jose Antonio Paixão; Abilio J F N Sobral; Lucia M L Cabral; A M d'A Rocha Gonsalves
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7.  Dimethyl 3,5-diethyl-1H-pyrrole-2,4-dicarboxyl-ate.

Authors:  Gui-Fen Lu; Wen-Sheng Lin; Wei-Hua Zhu; Zhong-Ping Ou
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