Literature DB >> 22091116

Dimethyl 3,5-diethyl-1H-pyrrole-2,4-dicarboxyl-ate.

Gui-Fen Lu1, Wen-Sheng Lin, Wei-Hua Zhu, Zhong-Ping Ou.   

Abstract

The title pyrrole derivative, C(12)H(17)NO(4), consists of a pyrrole ring with two diagonally attached meth-oxy-carbonyl groups and two diagonally attached ethyl groups. The two carbonyl groups are approximately in the same plane as the pyrrole ring, making dihedral angles of 3.50 (19) and 6.70 (19)°. In the crystal, adjacent mol-ecules are assembled into dimers in a head-to-head mode by pairs of inter-molecular N-H⋯O hydrogen bonds.

Entities:  

Year:  2011        PMID: 22091116      PMCID: PMC3213539          DOI: 10.1107/S1600536811028352

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of polysubstituted pyrroles, see: Brockmann & Tour (1995 ▶); Guilard et al. (2001 ▶); Trofimov et al. (2004 ▶). For related structures, see: Takaya et al. (2001 ▶). For background to complexes of pyrrole derivatives, see: Fan et al. (2008 ▶); Ou et al. (2009 ▶); Paixão et al. (2003 ▶); Yamamoto et al. (1986 ▶).

Experimental

Crystal data

C12H17NO4 M = 239.27 Monoclinic, a = 4.4697 (7) Å b = 14.616 (2) Å c = 19.784 (3) Å β = 90.467 (2)° V = 1292.4 (4) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 298 K 0.20 × 0.15 × 0.10 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2003 ▶) T min = 0.982, T max = 0.991 6296 measured reflections 2285 independent reflections 1977 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.118 S = 1.08 2285 reflections 155 parameters 1 restraint H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.16 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811028352/pk2335sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811028352/pk2335Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811028352/pk2335Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H17NO4F(000) = 512
Mr = 239.27Dx = 1.230 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3745 reflections
a = 4.4697 (7) Åθ = 2.8–27.4°
b = 14.616 (2) ŵ = 0.09 mm1
c = 19.784 (3) ÅT = 298 K
β = 90.467 (2)°Block, colorless
V = 1292.4 (4) Å30.20 × 0.15 × 0.10 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer2285 independent reflections
Radiation source: fine-focus sealed tube1977 reflections with I > 2σ(I)
graphiteRint = 0.037
φ and ω scansθmax = 25.0°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 2003)h = −5→5
Tmin = 0.982, Tmax = 0.991k = −15→17
6296 measured reflectionsl = −23→21
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.041H-atom parameters constrained
wR(F2) = 0.118w = 1/[σ2(Fo2) + (0.0619P)2 + 0.1775P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max < 0.001
2285 reflectionsΔρmax = 0.15 e Å3
155 parametersΔρmin = −0.16 e Å3
1 restraintExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.110 (8)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C11.0716 (4)−0.06793 (13)0.67868 (10)0.0771 (5)
H1A1.1839−0.06620.72020.116*
H1B1.2038−0.08080.64190.116*
H1C0.9220−0.11490.68120.116*
C20.7645 (3)0.02789 (10)0.61180 (6)0.0485 (4)
C30.6201 (3)0.11655 (9)0.60495 (6)0.0429 (3)
C40.6275 (3)0.19623 (9)0.64214 (6)0.0428 (3)
C50.4354 (3)0.25896 (9)0.60761 (6)0.0440 (3)
C60.3161 (3)0.21461 (9)0.55064 (6)0.0422 (3)
C70.1103 (3)0.24441 (10)0.49502 (7)0.0504 (4)
H7A−0.03050.28880.51260.060*
H7B−0.00300.19200.47890.060*
C80.2772 (4)0.28646 (14)0.43641 (8)0.0753 (5)
H8A0.13700.30430.40180.113*
H8B0.41460.24250.41840.113*
H8C0.38570.33930.45190.113*
C90.3744 (3)0.35270 (11)0.62967 (7)0.0548 (4)
C100.1230 (6)0.49089 (14)0.60468 (13)0.1063 (8)
H10A0.00560.51820.56920.159*
H10B0.29920.52700.61260.159*
H10C0.00710.48820.64530.159*
C110.8015 (3)0.21297 (11)0.70625 (7)0.0530 (4)
H11A0.86380.27650.70770.064*
H11B0.98030.17540.70620.064*
C120.6215 (4)0.19160 (16)0.76897 (8)0.0802 (6)
H12A0.74150.20330.80850.120*
H12B0.56280.12840.76830.120*
H12C0.44630.22960.76980.120*
N10.4307 (2)0.12986 (7)0.55029 (5)0.0439 (3)
H1N0.39180.08970.52070.053*
O10.2088 (3)0.39946 (8)0.58509 (7)0.0858 (4)
O20.4557 (3)0.38626 (9)0.68180 (7)0.0867 (4)
O30.9285 (3)0.01959 (7)0.66768 (5)0.0619 (3)
O40.7364 (3)−0.03336 (7)0.57103 (5)0.0725 (4)
U11U22U33U12U13U23
C10.0872 (12)0.0737 (11)0.0700 (11)0.0164 (9)−0.0229 (9)0.0148 (9)
C20.0557 (8)0.0537 (8)0.0361 (7)−0.0007 (6)−0.0071 (6)0.0027 (6)
C30.0452 (7)0.0510 (8)0.0324 (6)−0.0027 (6)−0.0039 (5)0.0028 (5)
C40.0428 (7)0.0518 (7)0.0337 (6)−0.0065 (5)0.0008 (5)−0.0004 (5)
C50.0448 (7)0.0501 (7)0.0370 (7)−0.0040 (6)0.0018 (5)−0.0018 (5)
C60.0426 (7)0.0485 (7)0.0356 (7)−0.0011 (5)0.0022 (5)0.0011 (5)
C70.0499 (7)0.0581 (8)0.0430 (7)0.0065 (6)−0.0060 (6)−0.0012 (6)
C80.0784 (11)0.0967 (13)0.0507 (9)0.0129 (10)−0.0038 (8)0.0251 (9)
C90.0604 (9)0.0543 (8)0.0497 (8)−0.0030 (7)0.0003 (7)−0.0054 (7)
C100.144 (2)0.0585 (11)0.1155 (18)0.0297 (12)−0.0188 (16)−0.0147 (12)
C110.0521 (8)0.0635 (9)0.0432 (8)−0.0057 (7)−0.0091 (6)−0.0072 (6)
C120.0775 (12)0.1278 (17)0.0351 (8)−0.0093 (11)−0.0089 (7)−0.0013 (9)
N10.0515 (7)0.0469 (6)0.0332 (6)−0.0012 (5)−0.0062 (5)−0.0037 (4)
O10.1210 (11)0.0572 (7)0.0788 (8)0.0254 (7)−0.0276 (8)−0.0122 (6)
O20.1163 (11)0.0700 (8)0.0733 (8)0.0097 (7)−0.0253 (7)−0.0288 (6)
O30.0770 (7)0.0614 (7)0.0468 (6)0.0075 (5)−0.0213 (5)0.0043 (5)
O40.1030 (9)0.0579 (7)0.0560 (7)0.0185 (6)−0.0278 (6)−0.0112 (5)
C1—O31.446 (2)C7—H7B0.9700
C1—H1A0.9600C8—H8A0.9600
C1—H1B0.9600C8—H8B0.9600
C1—H1C0.9600C8—H8C0.9600
C2—O41.2109 (17)C9—O21.1959 (18)
C2—O31.3270 (16)C9—O11.335 (2)
C2—C31.453 (2)C10—O11.444 (2)
C3—C41.3779 (19)C10—H10A0.9600
C3—N11.3816 (16)C10—H10B0.9600
C4—C51.4266 (19)C10—H10C0.9600
C4—C111.5024 (18)C11—C121.517 (2)
C5—C61.4017 (17)C11—H11A0.9700
C5—C91.464 (2)C11—H11B0.9700
C6—N11.3404 (17)C12—H12A0.9600
C6—C71.4935 (18)C12—H12B0.9600
C7—C81.514 (2)C12—H12C0.9600
C7—H7A0.9700N1—H1N0.8457
O3—C1—H1A109.5C7—C8—H8C109.5
O3—C1—H1B109.5H8A—C8—H8C109.5
H1A—C1—H1B109.5H8B—C8—H8C109.5
O3—C1—H1C109.5O2—C9—O1121.51 (15)
H1A—C1—H1C109.5O2—C9—C5125.79 (15)
H1B—C1—H1C109.5O1—C9—C5112.69 (13)
O4—C2—O3122.75 (13)O1—C10—H10A109.5
O4—C2—C3123.61 (12)O1—C10—H10B109.5
O3—C2—C3113.64 (12)H10A—C10—H10B109.5
C4—C3—N1108.11 (12)O1—C10—H10C109.5
C4—C3—C2134.03 (12)H10A—C10—H10C109.5
N1—C3—C2117.86 (11)H10B—C10—H10C109.5
C3—C4—C5106.00 (11)C4—C11—C12112.50 (12)
C3—C4—C11126.77 (13)C4—C11—H11A109.1
C5—C4—C11127.23 (12)C12—C11—H11A109.1
C6—C5—C4108.15 (12)C4—C11—H11B109.1
C6—C5—C9127.00 (13)C12—C11—H11B109.1
C4—C5—C9124.85 (12)H11A—C11—H11B107.8
N1—C6—C5106.78 (11)C11—C12—H12A109.5
N1—C6—C7119.92 (12)C11—C12—H12B109.5
C5—C6—C7133.28 (13)H12A—C12—H12B109.5
C6—C7—C8112.23 (12)C11—C12—H12C109.5
C6—C7—H7A109.2H12A—C12—H12C109.5
C8—C7—H7A109.2H12B—C12—H12C109.5
C6—C7—H7B109.2C6—N1—C3110.97 (11)
C8—C7—H7B109.2C6—N1—H1N124.6
H7A—C7—H7B107.9C3—N1—H1N124.4
C7—C8—H8A109.5C9—O1—C10116.33 (15)
C7—C8—H8B109.5C2—O3—C1116.55 (12)
H8A—C8—H8B109.5
D—H···AD—HH···AD···AD—H···A
N1—H1N···O4i0.852.072.8773 (15)160.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯O4i0.852.072.8773 (15)160

Symmetry code: (i) .

  6 in total

1.  C-vinylpyrroles as pyrrole building blocks.

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2.  A short history of SHELX.

Authors:  George M Sheldrick
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3.  Rhodium complex-catalyzed reaction of isonitriles with carbonyl compounds: catalytic synthesis of pyrroles.

Authors:  H Takaya; S Kojima; S Murahashi
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Authors:  R Guilard; C P Gros; F Bolze; F Jérôme; Z Ou; J Shao; J Fischer; R Weiss; K M Kadish
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Review 5.  Lamellarins and related pyrrole-derived alkaloids from marine organisms.

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6.  R4/4 (30) rectangular rings in 2,5-dioxopiperazine-1,4-diacetic acid.

Authors:  Manuela Ramos Silva; Ana Matos Beja; Jose Antonio Paixão; Abilio J F N Sobral; Lucia M L Cabral; A M d'A Rocha Gonsalves
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  6 in total
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1.  2-Ethyl 4-methyl 5-ethyl-3-methyl-1H-pyrrole-2,4-dicarboxyl-ate.

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  1 in total

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