Literature DB >> 22347057

Gliclazide impurity F: N-[(perhydro-cyclo-penta-[c]pyrrol-2-yl)amino-carbon-yl]-o-toluene-sulfonamide.

Di Wu, Xueyuan Wang, Dongying Pang, Wei Su, Yan Sun.   

Abstract

The title compound, C(15)H(21)N(3)O(3)S, is known to be an impurity of gliclazide [systematic name: N-(hexa-hydro-1H-cyclopenta[c]pyrrol-2-ylcarbamo-yl)-4-methyl-benzene-sulfonamide], a sul-fonyl-urea anti-diabetic drug. Gliclazide has a p-tolyl group substituting the sulfonamide functionality, while the title mol-ecule contains an o-tolyl group. Both five-membered fused rings adopt envelope conformations. In the crystal, N-H⋯O hydrogen bonds are formed between HN(C=O)NH groups, building centrosymmetric dimers. These dimers are further linked through N-H⋯O(sulfon-yl) contacts, forming chains in [100].

Entities:  

Year:  2012        PMID: 22347057      PMCID: PMC3275201          DOI: 10.1107/S1600536811054985

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to gliclazide and the impurities of gliclazide, see: Lebovitz & Feinglos (1983 ▶). For the crystal structure of gliclazide, see: Parvez et al. (1999 ▶); Winters et al. (1994 ▶).

Experimental

Crystal data

C15H21N3O3S M = 323.41 Monoclinic, a = 10.891 (7) Å b = 11.226 (7) Å c = 13.477 (9) Å β = 95.509 (9)° V = 1640.2 (18) Å3 Z = 4 Mo Kα radiation μ = 0.21 mm−1 T = 113 K 0.20 × 0.18 × 0.10 mm

Data collection

Rigaku Saturn724 CCD diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2002 ▶) T min = 0.959, T max = 0.979 16805 measured reflections 3904 independent reflections 3461 reflections with I > 2σ(I) R int = 0.070

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.113 S = 1.04 3904 reflections 208 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.51 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2002 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: CrystalStructure (Rigaku/MSC, 2006 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811054985/bh2389sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811054985/bh2389Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811054985/bh2389Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H21N3O3SF(000) = 688
Mr = 323.41Dx = 1.310 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5900 reflections
a = 10.891 (7) Åθ = 1.5–27.9°
b = 11.226 (7) ŵ = 0.21 mm1
c = 13.477 (9) ÅT = 113 K
β = 95.509 (9)°Prism, colourless
V = 1640.2 (18) Å30.20 × 0.18 × 0.10 mm
Z = 4
Rigaku Saturn724 CCD diffractometer3904 independent reflections
Radiation source: rotating anode3461 reflections with I > 2σ(I)
multilayerRint = 0.070
Detector resolution: 14.22 pixels mm-1θmax = 27.9°, θmin = 1.9°
ω and φ scansh = −14→14
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2002)k = −14→13
Tmin = 0.959, Tmax = 0.979l = −17→17
16805 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.113H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0562P)2 + 0.7703P] where P = (Fo2 + 2Fc2)/3
3904 reflections(Δ/σ)max = 0.002
208 parametersΔρmax = 0.30 e Å3
3 restraintsΔρmin = −0.51 e Å3
0 constraints
xyzUiso*/Ueq
S10.88574 (3)0.63900 (3)1.09521 (2)0.01593 (11)
O10.83163 (10)0.75502 (10)1.08708 (8)0.0226 (2)
O21.01217 (9)0.62502 (10)1.07406 (8)0.0209 (2)
O30.62260 (9)0.57766 (10)1.07603 (8)0.0205 (2)
N10.80984 (11)0.54879 (12)1.01545 (9)0.0174 (3)
N20.63131 (12)0.47495 (13)0.93204 (9)0.0222 (3)
N30.69959 (11)0.44335 (12)0.85221 (9)0.0179 (3)
C11.01300 (15)0.40745 (16)1.19750 (12)0.0251 (3)
H1A0.96940.38821.13240.038*
H1B1.03290.33371.23450.038*
H1C1.08930.45031.18790.038*
C20.93199 (14)0.48450 (14)1.25551 (11)0.0190 (3)
C30.91819 (16)0.45650 (16)1.35526 (12)0.0250 (3)
H30.96120.38991.38500.030*
C40.84335 (16)0.52348 (17)1.41160 (12)0.0288 (4)
H40.83770.50351.47950.035*
C50.77680 (16)0.61910 (17)1.36998 (12)0.0266 (4)
H50.72380.66321.40830.032*
C60.78836 (15)0.64984 (15)1.27155 (11)0.0211 (3)
H60.74280.71501.24200.025*
C70.86715 (13)0.58463 (14)1.21606 (10)0.0165 (3)
C80.68259 (13)0.53668 (14)1.01056 (10)0.0169 (3)
C90.70155 (15)0.31371 (15)0.83580 (12)0.0235 (3)
H9A0.61840.27880.83820.028*
H9B0.75980.27390.88620.028*
C100.74462 (16)0.30259 (17)0.73176 (13)0.0289 (4)
H100.83640.29460.73540.035*
C110.68091 (18)0.20163 (19)0.66902 (16)0.0389 (5)
H11A0.73400.17260.61850.047*
H11B0.66070.13410.71180.047*
C120.56419 (18)0.25961 (19)0.61967 (14)0.0358 (4)
H12A0.53040.21380.56050.043*
H12B0.50030.26610.66690.043*
C130.6079 (2)0.3821 (2)0.58998 (13)0.0386 (5)
H13A0.53800.43860.58060.046*
H13B0.64840.37770.52740.046*
C140.70093 (17)0.42092 (17)0.67816 (12)0.0294 (4)
H140.77200.46520.65410.035*
C150.64125 (16)0.49198 (16)0.75762 (11)0.0238 (3)
H15A0.65860.57820.75200.029*
H15B0.55080.47970.75190.029*
H10.8539 (17)0.5085 (18)0.9741 (13)0.038 (6)*
H20.5498 (9)0.4609 (18)0.9291 (15)0.031 (5)*
U11U22U33U12U13U23
S10.01388 (18)0.0184 (2)0.01533 (18)−0.00225 (13)0.00034 (13)0.00038 (12)
O10.0254 (6)0.0186 (6)0.0233 (5)−0.0009 (5)−0.0007 (4)0.0021 (4)
O20.0125 (5)0.0291 (6)0.0212 (5)−0.0041 (4)0.0017 (4)0.0003 (4)
O30.0147 (5)0.0292 (6)0.0180 (5)0.0003 (4)0.0028 (4)−0.0054 (4)
N10.0125 (6)0.0234 (7)0.0162 (6)−0.0016 (5)0.0014 (4)−0.0045 (5)
N20.0130 (6)0.0359 (8)0.0181 (6)−0.0031 (5)0.0037 (5)−0.0082 (5)
N30.0158 (6)0.0229 (7)0.0155 (6)−0.0003 (5)0.0036 (5)−0.0040 (5)
C10.0235 (8)0.0263 (9)0.0257 (8)0.0063 (7)0.0045 (6)0.0044 (6)
C20.0158 (7)0.0215 (8)0.0192 (7)−0.0010 (6)−0.0007 (5)0.0007 (6)
C30.0256 (8)0.0292 (9)0.0199 (7)0.0010 (7)−0.0005 (6)0.0062 (6)
C40.0303 (9)0.0399 (11)0.0163 (7)−0.0038 (8)0.0029 (6)0.0014 (7)
C50.0245 (8)0.0366 (10)0.0192 (7)0.0001 (7)0.0043 (6)−0.0064 (7)
C60.0193 (7)0.0225 (8)0.0212 (7)0.0002 (6)0.0008 (6)−0.0034 (6)
C70.0148 (6)0.0188 (7)0.0153 (6)−0.0038 (6)−0.0011 (5)−0.0012 (5)
C80.0138 (6)0.0204 (8)0.0165 (6)−0.0002 (6)0.0018 (5)0.0003 (5)
C90.0210 (7)0.0224 (8)0.0265 (8)0.0013 (6)−0.0010 (6)−0.0019 (6)
C100.0202 (7)0.0357 (10)0.0308 (9)0.0020 (7)0.0027 (6)−0.0136 (7)
C110.0335 (10)0.0372 (11)0.0447 (11)0.0047 (8)−0.0033 (8)−0.0228 (9)
C120.0309 (9)0.0407 (11)0.0347 (9)−0.0030 (8)−0.0015 (7)−0.0179 (8)
C130.0440 (11)0.0524 (13)0.0187 (8)−0.0078 (10)0.0001 (7)−0.0064 (8)
C140.0323 (9)0.0363 (10)0.0204 (7)−0.0092 (8)0.0070 (7)−0.0059 (7)
C150.0295 (8)0.0234 (9)0.0181 (7)−0.0013 (7)−0.0002 (6)−0.0003 (6)
S1—O11.4295 (14)C5—H50.9500
S1—O21.4413 (14)C6—C71.398 (2)
S1—N11.6413 (14)C6—H60.9500
S1—C71.7690 (18)C9—C101.526 (2)
O3—C81.2360 (18)C9—H9A0.9900
N1—C81.388 (2)C9—H9B0.9900
N1—H10.893 (7)C10—C111.539 (2)
N2—C81.341 (2)C10—C141.564 (3)
N2—N31.4107 (17)C10—H101.0000
N2—H20.898 (9)C11—C121.523 (3)
N3—C91.473 (2)C11—H11A0.9900
N3—C151.474 (2)C11—H11B0.9900
C1—C21.507 (2)C12—C131.521 (3)
C1—H1A0.9800C12—H12A0.9900
C1—H1B0.9800C12—H12B0.9900
C1—H1C0.9800C13—C141.548 (3)
C2—C31.403 (2)C13—H13A0.9900
C2—C71.405 (2)C13—H13B0.9900
C3—C41.388 (2)C14—C151.529 (2)
C3—H30.9500C14—H141.0000
C4—C51.384 (3)C15—H15A0.9900
C4—H40.9500C15—H15B0.9900
C5—C61.388 (2)
O1—S1—O2118.60 (7)N3—C9—C10103.24 (13)
O1—S1—N1109.51 (8)N3—C9—H9A111.1
O2—S1—N1103.53 (7)C10—C9—H9A111.1
O1—S1—C7107.59 (7)N3—C9—H9B111.1
O2—S1—C7109.91 (7)C10—C9—H9B111.1
N1—S1—C7107.17 (8)H9A—C9—H9B109.1
C8—N1—S1121.96 (10)C9—C10—C11113.77 (16)
C8—N1—H1121.0 (14)C9—C10—C14104.37 (13)
S1—N1—H1117.1 (14)C11—C10—C14105.70 (15)
C8—N2—N3121.44 (13)C9—C10—H10110.9
C8—N2—H2117.4 (13)C11—C10—H10110.9
N3—N2—H2120.9 (13)C14—C10—H10110.9
N2—N3—C9112.29 (12)C12—C11—C10103.80 (16)
N2—N3—C15110.58 (13)C12—C11—H11A111.0
C9—N3—C15104.33 (12)C10—C11—H11A111.0
C2—C1—H1A109.5C12—C11—H11B111.0
C2—C1—H1B109.5C10—C11—H11B111.0
H1A—C1—H1B109.5H11A—C11—H11B109.0
C2—C1—H1C109.5C13—C12—C11103.40 (17)
H1A—C1—H1C109.5C13—C12—H12A111.1
H1B—C1—H1C109.5C11—C12—H12A111.1
C3—C2—C7116.48 (14)C13—C12—H12B111.1
C3—C2—C1119.38 (15)C11—C12—H12B111.1
C7—C2—C1124.14 (14)H12A—C12—H12B109.0
C4—C3—C2121.70 (16)C12—C13—C14104.54 (16)
C4—C3—H3119.1C12—C13—H13A110.8
C2—C3—H3119.1C14—C13—H13A110.8
C5—C4—C3120.74 (15)C12—C13—H13B110.8
C5—C4—H4119.6C14—C13—H13B110.8
C3—C4—H4119.6H13A—C13—H13B108.9
C4—C5—C6119.22 (15)C15—C14—C13113.18 (16)
C4—C5—H5120.4C15—C14—C10104.51 (14)
C6—C5—H5120.4C13—C14—C10105.24 (16)
C5—C6—C7119.84 (16)C15—C14—H14111.2
C5—C6—H6120.1C13—C14—H14111.2
C7—C6—H6120.1C10—C14—H14111.2
C6—C7—C2121.92 (14)N3—C15—C14103.62 (14)
C6—C7—S1116.24 (12)N3—C15—H15A111.0
C2—C7—S1121.79 (11)C14—C15—H15A111.0
O3—C8—N2123.16 (14)N3—C15—H15B111.0
O3—C8—N1121.58 (14)C14—C15—H15B111.0
N2—C8—N1115.24 (13)H15A—C15—H15B109.0
O1—S1—N1—C8−51.88 (14)N3—N2—C8—O3171.41 (14)
O2—S1—N1—C8−179.30 (12)N3—N2—C8—N1−10.5 (2)
C7—S1—N1—C864.54 (14)S1—N1—C8—O3−12.1 (2)
C8—N2—N3—C9122.19 (16)S1—N1—C8—N2169.83 (12)
C8—N2—N3—C15−121.73 (16)N2—N3—C9—C10163.97 (12)
C7—C2—C3—C40.7 (2)C15—N3—C9—C1044.19 (15)
C1—C2—C3—C4−179.07 (16)N3—C9—C10—C11−142.41 (15)
C2—C3—C4—C51.7 (3)N3—C9—C10—C14−27.70 (16)
C3—C4—C5—C6−1.9 (3)C9—C10—C11—C1287.0 (2)
C4—C5—C6—C7−0.3 (2)C14—C10—C11—C12−26.96 (19)
C5—C6—C7—C22.8 (2)C10—C11—C12—C1341.04 (19)
C5—C6—C7—S1−174.57 (12)C11—C12—C13—C14−39.17 (19)
C3—C2—C7—C6−2.9 (2)C12—C13—C14—C15−91.52 (19)
C1—C2—C7—C6176.81 (15)C12—C13—C14—C1022.00 (19)
C3—C2—C7—S1174.32 (12)C9—C10—C14—C152.29 (17)
C1—C2—C7—S1−5.9 (2)C11—C10—C14—C15122.56 (15)
O1—S1—C7—C610.97 (14)C9—C10—C14—C13−117.18 (15)
O2—S1—C7—C6141.43 (12)C11—C10—C14—C133.09 (18)
N1—S1—C7—C6−106.71 (13)N2—N3—C15—C14−163.62 (13)
O1—S1—C7—C2−166.44 (12)C9—N3—C15—C14−42.68 (16)
O2—S1—C7—C2−35.98 (14)C13—C14—C15—N3137.91 (16)
N1—S1—C7—C275.88 (14)C10—C14—C15—N323.94 (17)
D—H···AD—HH···AD···AD—H···A
N2—H2···O3i0.90 (1)1.92 (1)2.820 (2)177 (2)
N1—H1···O2ii0.89 (1)2.23 (1)3.077 (2)158 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O3i0.90 (1)1.92 (1)2.820 (2)177 (2)
N1—H1⋯O2ii0.89 (1)2.23 (1)3.077 (2)158 (2)

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Gliclazide.

Authors:  M Parvez; M S Arayne; M K Zaman; N Sultana
Journal:  Acta Crystallogr C       Date:  1999-01-15       Impact factor: 1.172

3.  Solid-state properties and crystal structure of gliclazide.

Authors:  C S Winters; L Shields; P Timmins; P York
Journal:  J Pharm Sci       Date:  1994-03       Impact factor: 3.534

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1.  Crystal structure of flucetosulfuron.

Authors:  Hyunjin Park; Jineun Kim; Eunjin Kwon; Tae Ho Kim
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-09-12
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