Literature DB >> 22347054

4-Amino-3-(4-chloro-phen-yl)-1H-1,2,4-triazole-5(4H)-thione.

Sampath Natarajan1, Rita Mathews.   

Abstract

In the title compound, C(8)H(7)ClN(4)S, the benzene ring is statistically disordered over two conformations rotated about the Cl-C⋯C-C axis, which subtend dihedral angles of 24.7 (3) and 9.9 (2) ° with respect to the triazole ring. An intra-molecular C-H⋯N close contact occurs. In the crystal, N-H⋯N and N-H⋯S hydrogen bonds link the mol-ecules into (001) sheets: R(2) (2)(8) and R(2) (2)(10) graph-set motifs result. Weak C-H⋯N hydrogen bonds and aromatic π-π stacking inter-actions [shortest centroid-centroid separation = 3.681 (7) Å] complete the structure.

Entities:  

Year:  2012        PMID: 22347054      PMCID: PMC3275198          DOI: 10.1107/S1600536812000785

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure and background references, see: Natarajan & Mathews (2011 ▶). For a related structure, see: Ambalavanan et al. (2003 ▶).

Experimental

Crystal data

C8H7ClN4S M = 226.69 Triclinic, a = 6.0765 (9) Å b = 8.0268 (7) Å c = 10.9873 (16) Å α = 72.501 (10)° β = 87.597 (10)° γ = 67.88 (2)° V = 471.94 (12) Å3 Z = 2 Cu Kα radiation μ = 5.35 mm−1 T = 293 K 0.24 × 0.18 × 0.12 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: part of the refinement model (ΔF) (SHELXA; Sheldrick, 2008) ▶ T min = 0.146, T max = 0.618 1912 measured reflections 1818 independent reflections 1670 reflections with I > 2σ(I) R int = 0.054 3 standard reflections every 60 min intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.080 wR(F 2) = 0.236 S = 1.09 1818 reflections 173 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.62 e Å−3 Δρmin = −0.51 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms, 1996 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97 and PLATON. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812000785/hb6583sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812000785/hb6583Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812000785/hb6583Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H7ClN4SZ = 2
Mr = 226.69F(000) = 232
Triclinic, P1Dx = 1.595 Mg m3
a = 6.0765 (9) ÅCu Kα radiation, λ = 1.54184 Å
b = 8.0268 (7) ÅCell parameters from 25 reflections
c = 10.9873 (16) Åθ = 1–60°
α = 72.501 (10)°µ = 5.35 mm1
β = 87.597 (10)°T = 293 K
γ = 67.88 (2)°Needle, yellow
V = 471.94 (12) Å30.24 × 0.18 × 0.12 mm
Enraf–Nonius CAD-4 diffractometer1670 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.054
graphiteθmax = 72.5°, θmin = 4.2°
ω scansh = −6→7
Absorption correction: part of the refinement model (ΔF) (SHELXA; Sheldrick, 2008)k = −9→9
Tmin = 0.146, Tmax = 0.618l = −9→13
1912 measured reflections3 standard reflections every 60 min
1818 independent reflections intensity decay: none
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.080H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.236w = 1/[σ2(Fo2) + (0.1913P)2 + 0.1469P] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max < 0.001
1818 reflectionsΔρmax = 0.62 e Å3
173 parametersΔρmin = −0.51 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.031 (8)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cl10.91511 (17)0.68117 (13)−0.30339 (8)0.0585 (5)
S10.31850 (16)0.79307 (13)0.50686 (8)0.0534 (5)
N10.5022 (5)0.7466 (4)0.2844 (2)0.0404 (7)
N20.7683 (6)0.8756 (5)0.2550 (3)0.0569 (9)
N30.6640 (6)0.8820 (5)0.3677 (3)0.0596 (9)
H30.70320.92920.41960.072*
N40.3603 (7)0.6528 (5)0.2662 (3)0.0541 (8)
C10.4998 (6)0.8091 (5)0.3885 (3)0.0453 (8)
C20.6627 (5)0.7938 (4)0.2044 (3)0.0407 (7)
C30.7171 (5)0.7637 (4)0.0791 (3)0.0395 (7)
C4A0.5509 (19)0.7474 (19)0.0004 (9)0.0404 (19)0.50 (2)
H4A0.40410.74940.02910.048*0.50 (2)
C5A0.6105 (19)0.7284 (18)−0.1214 (9)0.048 (2)0.50 (2)
H5A0.50200.7227−0.17570.057*0.50 (2)
C4B0.631 (2)0.661 (2)0.0331 (10)0.041 (2)0.50 (2)
H4B0.53030.60720.07990.050*0.50 (2)
C5B0.694 (2)0.636 (2)−0.0856 (10)0.047 (3)0.50 (2)
H5B0.64010.5606−0.11560.056*0.50 (2)
C60.8321 (6)0.7185 (4)−0.1578 (3)0.0437 (8)
C7A0.9891 (19)0.737 (2)−0.0863 (8)0.047 (2)0.50 (2)
H7A1.13380.7384−0.11680.057*0.50 (2)
C8A0.9324 (19)0.755 (2)0.0335 (8)0.047 (2)0.50 (2)
H8A1.04510.76080.08500.057*0.50 (2)
C7B0.9186 (19)0.831 (2)−0.1110 (9)0.046 (2)0.50 (2)
H7B1.01540.8880−0.15920.056*0.50 (2)
C8B0.8574 (18)0.856 (2)0.0063 (8)0.041 (2)0.50 (2)
H8B0.90850.93210.03710.050*0.50 (2)
H4C0.394 (11)0.538 (9)0.327 (6)0.095 (19)*
H4D0.198 (12)0.724 (9)0.277 (6)0.096 (18)*
U11U22U33U12U13U23
Cl10.0650 (7)0.0717 (7)0.0365 (6)−0.0151 (5)0.0119 (4)−0.0289 (4)
S10.0548 (7)0.0735 (7)0.0408 (6)−0.0209 (5)0.0126 (4)−0.0356 (5)
N10.0407 (14)0.0474 (13)0.0337 (13)−0.0068 (10)0.0014 (10)−0.0258 (11)
N20.0591 (18)0.090 (2)0.0414 (16)−0.0351 (16)0.0129 (13)−0.0406 (15)
N30.0627 (19)0.098 (2)0.0446 (16)−0.0400 (17)0.0151 (14)−0.0490 (17)
N40.0587 (19)0.073 (2)0.0469 (17)−0.0299 (15)0.0138 (14)−0.0360 (15)
C10.0451 (17)0.0584 (17)0.0326 (15)−0.0081 (14)0.0023 (12)−0.0295 (13)
C20.0359 (15)0.0500 (16)0.0358 (15)−0.0072 (12)−0.0010 (11)−0.0238 (12)
C30.0373 (15)0.0435 (14)0.0330 (14)−0.0024 (11)0.0001 (11)−0.0213 (11)
C4A0.033 (4)0.049 (5)0.035 (4)−0.003 (4)0.001 (3)−0.023 (3)
C5A0.050 (4)0.051 (5)0.033 (4)−0.005 (4)−0.003 (3)−0.018 (4)
C4B0.041 (4)0.053 (6)0.034 (4)−0.012 (4)0.008 (3)−0.027 (4)
C5B0.052 (5)0.057 (6)0.038 (4)−0.016 (5)0.004 (4)−0.030 (4)
C60.0419 (16)0.0468 (15)0.0338 (16)−0.0026 (13)0.0028 (12)−0.0188 (12)
C7A0.047 (4)0.054 (6)0.040 (4)−0.014 (4)0.003 (3)−0.020 (4)
C8A0.045 (4)0.055 (6)0.045 (4)−0.012 (4)−0.004 (3)−0.028 (4)
C7B0.045 (4)0.048 (6)0.040 (4)−0.011 (4)0.010 (3)−0.016 (4)
C8B0.041 (4)0.048 (6)0.042 (4)−0.012 (4)0.006 (3)−0.030 (4)
Cl1—C61.735 (3)C4A—C5A1.410 (9)
S1—C11.675 (3)C4A—H4A0.9300
N1—C21.368 (4)C5A—C61.368 (9)
N1—C11.378 (4)C5A—H5A0.9300
N1—N41.394 (4)C4B—C5B1.395 (9)
N2—C21.311 (4)C4B—H4B0.9300
N2—N31.373 (4)C5B—C61.346 (9)
N3—C11.315 (5)C5B—H5B0.9300
N3—H30.8572C6—C7A1.339 (9)
N4—H4C0.91 (6)C6—C7B1.421 (10)
N4—H4D0.96 (7)C7A—C8A1.381 (10)
C2—C31.471 (4)C7A—H7A0.9300
C3—C4B1.344 (8)C8A—H8A0.9300
C3—C8A1.365 (9)C7B—C8B1.377 (10)
C3—C8B1.405 (9)C7B—H7B0.9300
C3—C4A1.423 (8)C8B—H8B0.9300
C2—N1—C1108.7 (3)C6—C5A—H5A120.8
C2—N1—N4127.1 (3)C4A—C5A—H5A120.8
C1—N1—N4124.3 (3)C3—C4B—C5B119.3 (7)
C2—N2—N3104.2 (3)C3—C4B—H4B120.4
C1—N3—N2114.0 (3)C5B—C4B—H4B120.4
C1—N3—H3123.3C6—C5B—C4B121.7 (6)
N2—N3—H3122.7C6—C5B—H5B119.1
N1—N4—H4C113 (4)C4B—C5B—H5B119.1
N1—N4—H4D109 (4)C7A—C6—C5B112.0 (5)
H4C—N4—H4D104 (5)C7A—C6—C5A123.0 (5)
N3—C1—N1103.3 (3)C5B—C6—C5A30.8 (4)
N3—C1—S1131.5 (3)C7A—C6—C7B28.6 (3)
N1—C1—S1125.2 (3)C5B—C6—C7B119.2 (5)
N2—C2—N1109.8 (3)C5A—C6—C7B113.4 (5)
N2—C2—C3122.3 (3)C7A—C6—Cl1118.0 (4)
N1—C2—C3127.9 (3)C5B—C6—Cl1121.1 (4)
C4B—C3—C8A110.6 (5)C5A—C6—Cl1119.0 (4)
C4B—C3—C8B121.1 (5)C7B—C6—Cl1119.7 (4)
C8A—C3—C8B30.7 (3)C6—C7A—C8A118.8 (7)
C4B—C3—C4A28.1 (3)C6—C7A—H7A120.6
C8A—C3—C4A117.7 (5)C8A—C7A—H7A120.6
C8B—C3—C4A111.9 (5)C3—C8A—C7A122.4 (6)
C4B—C3—C2122.7 (4)C3—C8A—H8A118.8
C8A—C3—C2119.7 (4)C7A—C8A—H8A118.8
C8B—C3—C2116.1 (4)C8B—C7B—C6119.3 (7)
C4A—C3—C2122.6 (4)C8B—C7B—H7B120.3
C5A—C4A—C3119.5 (6)C6—C7B—H7B120.3
C5A—C4A—H4A120.2C7B—C8B—C3119.3 (6)
C3—C4A—H4A120.2C7B—C8B—H8B120.4
C6—C5A—C4A118.3 (6)C3—C8B—H8B120.4
C2—N2—N3—C1−0.2 (5)C2—C3—C4B—C5B−178.8 (6)
N2—N3—C1—N11.7 (4)C3—C4B—C5B—C6−2.7 (14)
N2—N3—C1—S1−177.0 (3)C4B—C5B—C6—C7A31.8 (11)
C2—N1—C1—N3−2.5 (3)C4B—C5B—C6—C5A−86.1 (12)
N4—N1—C1—N3178.0 (3)C4B—C5B—C6—C7B1.1 (11)
C2—N1—C1—S1176.3 (2)C4B—C5B—C6—Cl1178.4 (7)
N4—N1—C1—S1−3.2 (4)C4A—C5A—C6—C7A−4.1 (11)
N3—N2—C2—N1−1.4 (4)C4A—C5A—C6—C5B73.4 (10)
N3—N2—C2—C3178.1 (3)C4A—C5A—C6—C7B−34.8 (9)
C1—N1—C2—N22.5 (4)C4A—C5A—C6—Cl1176.3 (5)
N4—N1—C2—N2−178.0 (3)C5B—C6—C7A—C8A−28.2 (10)
C1—N1—C2—C3−176.9 (3)C5A—C6—C7A—C8A4.5 (11)
N4—N1—C2—C32.5 (5)C7B—C6—C7A—C8A82.8 (12)
N2—C2—C3—C4B172.1 (9)Cl1—C6—C7A—C8A−175.9 (6)
N1—C2—C3—C4B−8.5 (9)C4B—C3—C8A—C7A32.1 (10)
N2—C2—C3—C8A24.1 (9)C8B—C3—C8A—C7A−84.4 (11)
N1—C2—C3—C8A−156.5 (8)C4A—C3—C8A—C7A2.2 (11)
N2—C2—C3—C8B−10.5 (7)C2—C3—C8A—C7A−176.4 (7)
N1—C2—C3—C8B168.9 (7)C6—C7A—C8A—C3−3.5 (13)
N2—C2—C3—C4A−154.4 (7)C7A—C6—C7B—C8B−83.4 (12)
N1—C2—C3—C4A25.0 (8)C5B—C6—C7B—C8B−0.8 (10)
C4B—C3—C4A—C5A−83.7 (11)C5A—C6—C7B—C8B33.1 (9)
C8A—C3—C4A—C5A−1.8 (10)Cl1—C6—C7B—C8B−178.1 (5)
C8B—C3—C4A—C5A31.6 (9)C6—C7B—C8B—C32.0 (11)
C2—C3—C4A—C5A176.8 (6)C4B—C3—C8B—C7B−3.6 (10)
C3—C4A—C5A—C62.6 (11)C8A—C3—C8B—C7B74.2 (9)
C8A—C3—C4B—C5B−28.3 (10)C4A—C3—C8B—C7B−33.5 (9)
C8B—C3—C4B—C5B3.9 (11)C2—C3—C8B—C7B178.9 (6)
C4A—C3—C4B—C5B82.2 (13)
D—H···AD—HH···AD···AD—H···A
C4B—H4B···N40.932.322.98128
N3—H3···S1i0.862.553.332 (3)152
C5B—H5B···N4ii0.932.723.582 (8)155
C8A—H8A···N4iii0.932.533.416 (9)158
C7B—H7B···N2iv0.932.643.541 (10)162
N4—H4C···S1v0.91 (6)2.70 (6)3.552 (4)155 (5)
N4—H4D···N2vi0.96 (7)2.42 (7)3.349 (5)164 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C4B—H4B⋯N40.932.322.98128
N3—H3⋯S1i0.862.553.332 (3)152
C5B—H5B⋯N4ii0.932.723.582 (8)155
C8A—H8A⋯N4iii0.932.533.416 (9)158
C7B—H7B⋯N2iv0.932.643.541 (10)162
N4—H4C⋯S1v0.91 (6)2.70 (6)3.552 (4)155 (5)
N4—H4D⋯N2vi0.96 (7)2.42 (7)3.349 (5)164 (5)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  4-({(E)-[2-(But-3-en-1-yl)-1-(prop-2-en-1-yl)-4-sulfanyl-1H-imidazol-5-yl]methyl-idene}amino)-3-phenyl-1H-1,2,4-triazole-5(4H)-thione.

Authors:  Sampath Natarajan; Rita Mathews
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-05

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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