Literature DB >> 22219872

4-({(E)-[2-(But-3-en-1-yl)-1-(prop-2-en-1-yl)-4-sulfanyl-1H-imidazol-5-yl]methyl-idene}amino)-3-phenyl-1H-1,2,4-triazole-5(4H)-thione.

Sampath Natarajan1, Rita Mathews.   

Abstract

In the title compound, C(19)H(20)N(6)S(2), the dihedral angle between the phenyl and triazole rings is 24.1 (2)° while the dihedral angles between the imidazole ring and the triazole and phenyl rings are 39.9 (2) and 55.3 (2)°, respectively. The crystal structure is stabilized by inter-molecular N-H⋯N hydrogen bonds which form chains along [10[Formula: see text]].

Entities:  

Year:  2011        PMID: 22219872      PMCID: PMC3247567          DOI: 10.1107/S1600536811039833

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biological applications of Schiff base compounds, see: Liang (2003 ▶); Bacci et al. (2005 ▶). For the biological activity of triazoles and their derivatives, see: Amir et al. (2008 ▶); Sztanke et al. (2008 ▶); Padmavathi et al. (2008 ▶); Thenmozhi et al. (2010 ▶). Pharmacological compounds having triazole moieties appear to be very effective aromatese inhibitors for the prevention of breast cancer, see: Ünver et al. (2010 ▶).

Experimental

Crystal data

C19H20N6S2 M = 396.53 Monoclinic, a = 13.384 (3) Å b = 13.892 (3) Å c = 11.349 (2) Å β = 101.953 (3)° V = 2064.5 (7) Å3 Z = 4 Mo Kα radiation μ = 0.27 mm−1 T = 293 K 0.28 × 0.25 × 0.23 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer 7754 measured reflections 3788 independent reflections 3391 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.139 S = 1.07 3788 reflections 244 parameters 2 restraints H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811039833/kj2187sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811039833/kj2187Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811039833/kj2187Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H20N6S2F(000) = 832
Mr = 396.53Dx = 1.276 Mg m3
Monoclinic, CcMo Kα radiation, λ = 0.71073 Å
a = 13.384 (3) ÅCell parameters from 7754 reflections
b = 13.892 (3) Åθ = 2.1–27.0°
c = 11.349 (2) ŵ = 0.27 mm1
β = 101.953 (3)°T = 293 K
V = 2064.5 (7) Å3Prism, pale yellow
Z = 40.28 × 0.25 × 0.23 mm
Bruker SMART APEX CCD area-detector diffractometer3391 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.017
graphiteθmax = 27.0°, θmin = 2.1°
ω scansh = −16→16
7754 measured reflectionsk = −17→17
3788 independent reflectionsl = −14→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.139H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0788P)2 + 0.8006P] where P = (Fo2 + 2Fc2)/3
3788 reflections(Δ/σ)max = 0.001
244 parametersΔρmax = 0.33 e Å3
2 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.62454 (8)0.22573 (8)−0.09079 (10)0.0795 (3)
H10.67130.1935−0.16130.119*
S20.50671 (9)0.18382 (7)0.24665 (11)0.0776 (3)
N10.4682 (2)0.38001 (19)0.2489 (3)0.0520 (6)
C20.4505 (3)0.2855 (3)0.2779 (3)0.0607 (8)
N30.3797 (2)0.2949 (2)0.3446 (3)0.0677 (8)
H30.35360.24650.37480.081*
N40.3523 (3)0.3875 (2)0.3605 (3)0.0695 (8)
C50.4076 (3)0.4390 (3)0.3039 (3)0.0565 (8)
C60.3977 (3)0.5438 (3)0.2943 (3)0.0607 (8)
C70.4199 (3)0.5949 (3)0.1981 (4)0.0718 (10)
H70.44870.56410.14050.086*
C80.3985 (4)0.6924 (3)0.1887 (5)0.0930 (14)
H80.41350.72680.12420.112*
C90.3562 (4)0.7392 (4)0.2712 (6)0.0979 (16)
H90.34050.80430.26210.117*
C100.3367 (5)0.6889 (4)0.3690 (6)0.1026 (16)
H100.30980.72050.42760.123*
C110.3571 (4)0.5923 (3)0.3796 (5)0.0864 (13)
H110.34340.55880.44540.104*
N120.5512 (2)0.4157 (2)0.2041 (2)0.0534 (6)
C130.5707 (2)0.3656 (2)0.1163 (3)0.0510 (7)
H130.52630.31570.08630.061*
C140.6567 (2)0.3821 (2)0.0621 (3)0.0498 (7)
C150.6859 (3)0.3256 (2)−0.0233 (3)0.0554 (8)
N160.7739 (2)0.3557 (2)−0.0521 (3)0.0586 (7)
C170.8009 (3)0.4324 (2)0.0163 (3)0.0576 (8)
N180.7337 (2)0.45065 (18)0.0878 (2)0.0529 (6)
C190.7387 (3)0.5317 (3)0.1724 (3)0.0615 (8)
H19A0.70620.51300.23780.074*
H19B0.80980.54590.20670.074*
C200.6890 (4)0.6192 (3)0.1151 (5)0.0787 (12)
H200.68810.67150.16590.094*
C210.6481 (5)0.6321 (4)0.0080 (6)0.0983 (16)
H21A0.64650.5826−0.04750.118*
H21B0.61910.6915−0.01700.118*
C220.8959 (4)0.4875 (3)0.0161 (5)0.0925 (16)
H22A0.90240.4973−0.06660.111*
H22B0.89020.55030.05140.111*
C230.9883 (4)0.4404 (4)0.0821 (9)0.152 (3)
H23B0.98790.37360.05710.182*
H23A0.98800.44150.16750.182*
C241.0858 (6)0.4886 (5)0.0613 (15)0.220 (6)
H241.08440.55050.02980.264*
C251.1675 (6)0.4425 (8)0.0880 (11)0.199 (5)
H25A1.16770.38070.11950.239*
H25B1.22810.47000.07640.239*
U11U22U33U12U13U23
S10.0824 (7)0.0741 (6)0.0920 (7)−0.0194 (5)0.0409 (6)−0.0316 (5)
S20.0906 (7)0.0572 (5)0.0970 (7)−0.0004 (5)0.0467 (6)−0.0015 (5)
N10.0515 (14)0.0552 (15)0.0571 (15)−0.0019 (11)0.0294 (12)0.0031 (12)
C20.0590 (19)0.068 (2)0.061 (2)−0.0067 (16)0.0263 (16)0.0024 (15)
N30.0701 (18)0.0648 (18)0.081 (2)−0.0029 (14)0.0454 (16)0.0120 (15)
N40.0696 (18)0.0688 (18)0.084 (2)0.0036 (15)0.0483 (17)0.0082 (16)
C50.0526 (17)0.070 (2)0.0534 (18)0.0031 (15)0.0248 (14)0.0057 (15)
C60.0495 (18)0.0632 (19)0.075 (2)0.0059 (15)0.0267 (16)0.0011 (17)
C70.081 (2)0.067 (2)0.074 (2)0.0027 (19)0.031 (2)0.0065 (18)
C80.111 (4)0.076 (3)0.095 (3)0.005 (3)0.027 (3)0.019 (2)
C90.102 (4)0.066 (3)0.125 (4)0.027 (2)0.022 (3)0.005 (3)
C100.112 (4)0.082 (3)0.127 (4)0.024 (3)0.057 (3)−0.007 (3)
C110.092 (3)0.087 (3)0.095 (3)0.023 (2)0.053 (3)0.002 (2)
N120.0522 (14)0.0620 (15)0.0540 (15)−0.0017 (12)0.0295 (12)0.0045 (12)
C130.0480 (16)0.0578 (18)0.0504 (18)−0.0032 (13)0.0178 (14)0.0021 (14)
C140.0515 (17)0.0523 (16)0.0499 (18)0.0035 (13)0.0208 (14)0.0019 (13)
C150.0579 (18)0.0545 (18)0.060 (2)0.0018 (14)0.0274 (15)−0.0023 (14)
N160.0628 (16)0.0585 (16)0.0652 (18)−0.0012 (13)0.0380 (14)−0.0036 (13)
C170.063 (2)0.0534 (17)0.067 (2)−0.0015 (15)0.0368 (17)0.0028 (15)
N180.0605 (15)0.0483 (13)0.0578 (15)−0.0009 (12)0.0303 (12)0.0003 (12)
C190.066 (2)0.0562 (18)0.067 (2)−0.0088 (15)0.0261 (17)−0.0108 (15)
C200.082 (3)0.068 (2)0.089 (3)−0.002 (2)0.024 (3)−0.016 (2)
C210.108 (4)0.073 (3)0.106 (4)0.014 (3)0.006 (3)−0.002 (3)
C220.095 (3)0.082 (3)0.125 (4)−0.032 (3)0.079 (3)−0.029 (3)
C230.059 (3)0.084 (3)0.322 (11)−0.019 (2)0.063 (4)−0.027 (5)
C240.093 (5)0.090 (4)0.514 (19)−0.031 (4)0.152 (8)−0.058 (7)
C250.080 (4)0.223 (10)0.314 (14)−0.025 (5)0.087 (6)−0.018 (10)
S1—C151.711 (4)C14—C151.365 (4)
S1—H11.2000C14—N181.389 (4)
S2—C21.673 (4)C15—N161.352 (4)
N1—C21.385 (5)N16—C171.324 (5)
N1—C51.389 (4)C17—N181.355 (4)
N1—N121.405 (4)C17—C221.485 (5)
C2—N31.337 (5)N18—C191.472 (4)
N3—N41.359 (4)C19—C201.471 (6)
N3—H30.8600C19—H19A0.9700
N4—C51.292 (4)C19—H19B0.9700
C5—C61.463 (5)C20—C211.239 (7)
C6—C111.380 (5)C20—H200.9300
C6—C71.386 (5)C21—H21A0.9300
C7—C81.384 (6)C21—H21B0.9300
C7—H70.9300C22—C231.461 (9)
C8—C91.356 (8)C22—H22A0.9700
C8—H80.9300C22—H22B0.9700
C9—C101.381 (8)C23—C241.529 (8)
C9—H90.9300C23—H23B0.9700
C10—C111.370 (7)C23—H23A0.9700
C10—H100.9300C24—C251.250 (13)
C11—H110.9300C24—H240.9300
N12—C131.285 (4)C25—H25A0.9300
C13—C141.432 (4)C25—H25B0.9300
C13—H130.9300
C15—S1—H1109.5N16—C15—S1120.2 (2)
C2—N1—C5107.9 (3)C14—C15—S1127.1 (3)
C2—N1—N12127.4 (3)C17—N16—C15104.6 (3)
C5—N1—N12122.3 (3)N16—C17—N18111.6 (3)
N3—C2—N1102.6 (3)N16—C17—C22123.0 (3)
N3—C2—S2127.2 (3)N18—C17—C22125.4 (3)
N1—C2—S2130.1 (3)C17—N18—C14107.5 (3)
C2—N3—N4114.2 (3)C17—N18—C19126.0 (3)
C2—N3—H3122.9C14—N18—C19126.4 (3)
N4—N3—H3122.9C20—C19—N18112.8 (3)
C5—N4—N3105.1 (3)C20—C19—H19A109.0
N4—C5—N1110.2 (3)N18—C19—H19A109.0
N4—C5—C6122.4 (3)C20—C19—H19B109.0
N1—C5—C6127.2 (3)N18—C19—H19B109.0
C11—C6—C7118.8 (4)H19A—C19—H19B107.8
C11—C6—C5118.4 (4)C21—C20—C19128.4 (4)
C7—C6—C5122.6 (3)C21—C20—H20115.8
C8—C7—C6119.2 (4)C19—C20—H20115.8
C8—C7—H7120.4C20—C21—H21A120.0
C6—C7—H7120.4C20—C21—H21B120.0
C9—C8—C7121.6 (5)H21A—C21—H21B120.0
C9—C8—H8119.2C23—C22—C17113.7 (4)
C7—C8—H8119.2C23—C22—H22A108.8
C8—C9—C10119.2 (4)C17—C22—H22A108.8
C8—C9—H9120.4C23—C22—H22B108.8
C10—C9—H9120.4C17—C22—H22B108.8
C11—C10—C9119.9 (5)H22A—C22—H22B107.7
C11—C10—H10120.1C22—C23—C24112.6 (7)
C9—C10—H10120.1C22—C23—H23B109.1
C10—C11—C6121.2 (5)C24—C23—H23B109.1
C10—C11—H11119.4C22—C23—H23A109.1
C6—C11—H11119.4C24—C23—H23A109.1
C13—N12—N1113.1 (3)H23B—C23—H23A107.8
N12—C13—C14123.8 (3)C25—C24—C23118.0 (9)
N12—C13—H13118.1C25—C24—H24121.0
N14—C13—H13118.1C23—C24—H24121.0
C15—C14—N18103.6 (3)C24—C25—H25A120.0
C15—C14—C13125.9 (3)C24—C25—H25B120.0
N18—C14—C13130.3 (3)H25A—C25—H25B120.0
N16—C15—C14112.7 (3)
C5—N1—C2—N31.5 (4)N1—N12—C13—C14−174.4 (3)
N12—N1—C2—N3164.0 (3)N12—C13—C14—C15173.5 (3)
C5—N1—C2—S2−175.1 (3)N12—C13—C14—N18−0.4 (5)
N12—N1—C2—S2−12.6 (6)N18—C14—C15—N16−0.8 (4)
N1—C2—N3—N4−0.5 (4)C13—C14—C15—N16−176.0 (3)
S2—C2—N3—N4176.2 (3)N18—C14—C15—S1178.4 (3)
C2—N3—N4—C5−0.7 (4)C13—C14—C15—S13.3 (5)
N3—N4—C5—N11.6 (4)C14—C15—N16—C170.1 (4)
N3—N4—C5—C6177.0 (3)S1—C15—N16—C17−179.2 (3)
C2—N1—C5—N4−2.0 (4)C15—N16—C17—N180.7 (4)
N12—N1—C5—N4−165.6 (3)C15—N16—C17—C22178.4 (4)
C2—N1—C5—C6−177.2 (4)N16—C17—N18—C14−1.3 (4)
N12—N1—C5—C619.2 (5)C22—C17—N18—C14−178.8 (4)
N4—C5—C6—C1123.2 (6)N16—C17—N18—C19−178.2 (3)
N1—C5—C6—C11−162.2 (4)C22—C17—N18—C194.2 (6)
N4—C5—C6—C7−151.5 (4)C15—C14—N18—C171.2 (3)
N1—C5—C6—C723.0 (6)C13—C14—N18—C17176.1 (3)
C11—C6—C7—C8−1.5 (6)C15—C14—N18—C19178.1 (3)
C5—C6—C7—C8173.2 (4)C13—C14—N18—C19−7.0 (5)
C6—C7—C8—C9−0.1 (8)C17—N18—C19—C2086.8 (4)
C7—C8—C9—C101.9 (9)C14—N18—C19—C20−89.6 (4)
C8—C9—C10—C11−2.1 (9)N18—C19—C20—C21−2.4 (7)
C9—C10—C11—C60.4 (9)N16—C17—C22—C23−76.5 (6)
C7—C6—C11—C101.4 (7)N18—C17—C22—C23100.8 (5)
C5—C6—C11—C10−173.5 (5)C17—C22—C23—C24169.4 (7)
C2—N1—N12—C1347.3 (4)C22—C23—C24—C25−162.9 (12)
C5—N1—N12—C13−152.4 (3)
D—H···AD—HH···AD···AD—H···A
N3—H3···N16i0.862.052.907 (5)172
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3⋯N16i0.862.052.907 (5)172

Symmetry code: (i) .

  8 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Antimicrobial and mutagenic properties of organotin(IV) complexes with isatin and N-alkylisatin bisthiocarbonohydrazones.

Authors:  A Bacchi; M Carcelli; P Pelagatti; G Pelizzi; M C Rodriguez-Arguelles; D Rogolino; C Solinas; F Zani
Journal:  J Inorg Biochem       Date:  2005-02       Impact factor: 4.155

3.  Condensed bridgehead nitrogen heterocyclic system: synthesis and pharmacological activities of 1,2,4-triazolo-[3,4-b]-1,3,4-thiadiazole derivatives of ibuprofen and biphenyl-4-yloxy acetic acid.

Authors:  Mohd Amir; Harish Kumar; S A Javed
Journal:  Eur J Med Chem       Date:  2007-10-06       Impact factor: 6.514

4.  Synthesis, determination of the lipophilicity, anticancer and antimicrobial properties of some fused 1,2,4-triazole derivatives.

Authors:  Krzysztof Sztanke; Tomasz Tuzimski; Jolanta Rzymowska; Kazimierz Pasternak; Martyna Kandefer-Szerszeń
Journal:  Eur J Med Chem       Date:  2007-04-14       Impact factor: 6.514

5.  Synthesis and antimicrobial activity of novel sulfone-linked bis heterocycles.

Authors:  V Padmavathi; P Thriveni; G Sudhakar Reddy; D Deepti
Journal:  Eur J Med Chem       Date:  2007-07-06       Impact factor: 6.514

6.  Ethyl 4-(3-ethyl-5-oxo-4,5-dihydro-1H-1,2,4-triazol-4-yl)benzoate.

Authors:  Yasemin Unver; Yavuz Köysal; Hasan Tanak; Dilek Unlüer; Samil Işık
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-08

7.  (E)-N-Benzyl-idene-4H-1,2,4-triazol-4-amine.

Authors:  M Thenmozhi; T Kavitha; B Palakshi Reddy; V Vijayakumar; M N Ponnuswamy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-06

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total
  2 in total

1.  4-Amino-3-(4-chloro-phen-yl)-1H-1,2,4-triazole-5(4H)-thione.

Authors:  Sampath Natarajan; Rita Mathews
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-18

2.  Crystal structure of 5-(5,6-di-hydro-benzo[4,5]imidazo[1,2-c]quinazolin-6-yl)-2-meth-oxy-phenol.

Authors:  Farook Adam; Md Azharul Arafath; A Haque Rosenani; Mohd R Razali
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  2 in total

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