Literature DB >> 22347015

(Z)-2-Meth-oxy-N-[(5-nitro-thio-phen-2-yl)methyl-idene]aniline.

Nihal Kan Kaynar, Sümeyye Gümüs, Erbil Ağar, Orhan Büyükgüngör, Metin Yavuz.   

Abstract

The dihedral angle between the benzene and thio-phene rings in the title compound, C(12)H(10)N(2)O(3)S, is 27.94 (13)°. An inter-molecular C-H⋯π inter-action contributes to the stability of the crystal structure.

Entities:  

Year:  2012        PMID: 22347015      PMCID: PMC3275070          DOI: 10.1107/S160053681200044X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological properties of Schiff bases, see: Barton & Ollis (1979 ▶); Layer (1963 ▶); Ingold (1969 ▶), for their industrial properties, see: Taggi et al. (2002 ▶) and for their reaction properties, see: Aydoğan et al. (2001 ▶). For related structures, see: Ağar et al. (2010 ▶); Tanak et al. (2009 ▶); Ceylan et al. (2011 ▶).

Experimental

Crystal data

C12H10N2O3S M = 262.28 Orthorhombic, a = 6.6825 (6) Å b = 7.7926 (5) Å c = 23.7180 (12) Å V = 1235.09 (15) Å3 Z = 4 Mo Kα radiation μ = 0.26 mm−1 T = 296 K 0.59 × 0.39 × 0.05 mm

Data collection

Stoe IPDS II diffractometer Absorption correction: integration (X-RED32; Stoe & Cie, 2002 ▶) T min = 0.974, T max = 0.974 5645 measured reflections 2599 independent reflections 1799 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.069 S = 0.93 2599 reflections 163 parameters H-atom parameters constrained Δρmax = 0.12 e Å−3 Δρmin = −0.21 e Å−3 Absolute structure: Flack (1983 ▶), 1067 Friedel pairs Flack parameter: −0.04 (8) Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681200044X/bt5776sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681200044X/bt5776Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681200044X/bt5776Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H10N2O3SF(000) = 544
Mr = 262.28Dx = 1.411 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 6785 reflections
a = 6.6825 (6) Åθ = 2.6–27.2°
b = 7.7926 (5) ŵ = 0.26 mm1
c = 23.7180 (12) ÅT = 296 K
V = 1235.09 (15) Å3Plate, yellow
Z = 40.59 × 0.39 × 0.05 mm
Stoe IPDS II diffractometer2599 independent reflections
Radiation source: fine-focus sealed tube1799 reflections with I > 2σ(I)
graphiteRint = 0.038
Detector resolution: 6.67 pixels mm-1θmax = 26.8°, θmin = 2.8°
rotation method scansh = −6→8
Absorption correction: integration (X-RED32; Stoe & Cie, 2002)k = −9→9
Tmin = 0.974, Tmax = 0.974l = −29→29
5645 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.037H-atom parameters constrained
wR(F2) = 0.069w = 1/[σ2(Fo2) + (0.0284P)2] where P = (Fo2 + 2Fc2)/3
S = 0.93(Δ/σ)max < 0.001
2599 reflectionsΔρmax = 0.12 e Å3
163 parametersΔρmin = −0.21 e Å3
0 restraintsAbsolute structure: Flack (1983), 1067 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.04 (8)
Experimental. 108 frames, detector distance = 120 mm
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.93052 (10)0.80791 (7)0.16132 (3)0.06181 (17)
O40.4298 (3)0.59180 (17)0.04012 (7)0.0711 (5)
C70.5822 (4)0.2075 (3)0.11420 (10)0.0649 (6)
H70.67800.17490.14050.078*
C110.4265 (4)0.4242 (3)0.05670 (10)0.0572 (5)
C60.5750 (4)0.3765 (3)0.09543 (9)0.0568 (6)
N20.7021 (4)0.5066 (2)0.11656 (8)0.0613 (5)
C11.1502 (4)0.8578 (3)0.19332 (10)0.0561 (6)
O11.3451 (3)1.0633 (2)0.23403 (9)0.0968 (7)
C80.4476 (5)0.0878 (3)0.09384 (11)0.0735 (7)
H80.4546−0.02550.10600.088*
N11.1877 (4)1.0325 (3)0.20966 (9)0.0695 (6)
C50.8791 (4)0.4701 (3)0.13135 (10)0.0614 (6)
H50.92680.35920.12590.074*
C90.3052 (5)0.1357 (3)0.05614 (12)0.0744 (8)
H90.21470.05460.04280.089*
C41.0087 (3)0.5975 (3)0.15657 (11)0.0562 (6)
O21.0599 (4)1.1402 (2)0.19817 (8)0.0883 (6)
C100.2928 (4)0.3033 (3)0.03729 (10)0.0671 (6)
H100.19440.33430.01150.081*
C31.1934 (4)0.5742 (3)0.17897 (11)0.0675 (7)
H31.25820.46860.17980.081*
C21.2765 (4)0.7248 (3)0.20070 (11)0.0685 (7)
H21.40130.73230.21780.082*
C130.2741 (5)0.6489 (3)0.00482 (13)0.0897 (9)
H13A0.29330.7682−0.00370.135*
H13B0.14810.63390.02360.135*
H13C0.27480.5837−0.02950.135*
U11U22U33U12U13U23
S10.0602 (3)0.0558 (3)0.0694 (4)0.0056 (3)−0.0122 (4)0.0013 (3)
O40.0705 (11)0.0537 (8)0.0889 (13)−0.0040 (9)−0.0184 (12)0.0056 (8)
C70.0688 (15)0.0610 (12)0.0650 (14)−0.0041 (14)0.0017 (15)0.0057 (12)
C110.0587 (13)0.0531 (11)0.0598 (14)−0.0041 (12)0.0017 (14)−0.0040 (9)
C60.0613 (14)0.0544 (11)0.0548 (14)−0.0042 (12)0.0049 (14)−0.0065 (9)
N20.0669 (15)0.0554 (10)0.0615 (12)−0.0027 (10)−0.0049 (11)−0.0060 (9)
C10.0587 (15)0.0552 (12)0.0543 (14)−0.0048 (10)−0.0054 (12)0.0014 (10)
O10.0939 (17)0.0998 (13)0.0967 (15)−0.0252 (12)−0.0188 (13)−0.0225 (11)
C80.087 (2)0.0523 (12)0.0808 (19)−0.0052 (15)0.0142 (18)0.0050 (12)
N10.0762 (16)0.0724 (14)0.0598 (14)−0.0166 (13)−0.0058 (12)−0.0045 (10)
C50.0612 (19)0.0548 (12)0.0681 (16)0.0022 (11)−0.0007 (13)−0.0027 (11)
C90.0749 (18)0.0668 (15)0.0813 (19)−0.0151 (14)0.0057 (18)−0.0075 (13)
C40.0531 (14)0.0539 (11)0.0616 (15)0.0036 (9)−0.0017 (12)−0.0006 (11)
O20.1080 (15)0.0631 (10)0.0937 (14)0.0073 (12)−0.0122 (15)−0.0038 (9)
C100.0635 (15)0.0672 (14)0.0706 (16)−0.0065 (13)−0.0015 (14)−0.0088 (13)
C30.0599 (17)0.0611 (13)0.0816 (19)0.0080 (13)−0.0018 (14)0.0015 (12)
C20.0580 (15)0.0760 (16)0.0714 (16)−0.0016 (13)−0.0133 (13)0.0070 (13)
C130.081 (2)0.0754 (16)0.112 (2)0.0061 (15)−0.0289 (19)0.0128 (15)
S1—C11.698 (2)C8—H80.9300
S1—C41.725 (2)N1—O21.228 (3)
O4—C111.364 (2)C5—C41.447 (3)
O4—C131.408 (3)C5—H50.9300
C7—C81.383 (4)C9—C101.383 (3)
C7—C61.391 (3)C9—H90.9300
C7—H70.9300C4—C31.356 (3)
C11—C101.378 (3)C10—H100.9300
C11—C61.402 (3)C3—C21.397 (3)
C6—N21.414 (3)C3—H30.9300
N2—C51.266 (3)C2—H20.9300
C1—C21.348 (3)C13—H13A0.9600
C1—N11.437 (3)C13—H13B0.9600
O1—N11.224 (3)C13—H13C0.9600
C8—C91.358 (4)
C1—S1—C489.14 (11)C4—C5—H5119.3
C11—O4—C13117.5 (2)C8—C9—C10120.9 (2)
C8—C7—C6120.3 (2)C8—C9—H9119.5
C8—C7—H7119.9C10—C9—H9119.5
C6—C7—H7119.9C3—C4—C5127.9 (2)
O4—C11—C10124.7 (2)C3—C4—S1112.20 (18)
O4—C11—C6115.5 (2)C5—C4—S1119.86 (17)
C10—C11—C6119.8 (2)C11—C10—C9119.9 (2)
C7—C6—C11119.0 (2)C11—C10—H10120.0
C7—C6—N2123.0 (2)C9—C10—H10120.0
C11—C6—N2117.87 (19)C4—C3—C2113.2 (2)
C5—N2—C6119.9 (2)C4—C3—H3123.4
C2—C1—N1125.7 (2)C2—C3—H3123.4
C2—C1—S1115.04 (17)C1—C2—C3110.4 (2)
N1—C1—S1119.23 (18)C1—C2—H2124.8
C9—C8—C7120.0 (2)C3—C2—H2124.8
C9—C8—H8120.0O4—C13—H13A109.5
C7—C8—H8120.0O4—C13—H13B109.5
O1—N1—O2124.6 (2)H13A—C13—H13B109.5
O1—N1—C1117.6 (2)O4—C13—H13C109.5
O2—N1—C1117.8 (2)H13A—C13—H13C109.5
N2—C5—C4121.3 (2)H13B—C13—H13C109.5
N2—C5—H5119.3
C13—O4—C11—C106.3 (4)S1—C1—N1—O2−2.0 (3)
C13—O4—C11—C6−175.0 (2)C6—N2—C5—C4−175.9 (2)
C8—C7—C6—C111.5 (4)C7—C8—C9—C100.4 (4)
C8—C7—C6—N2176.9 (2)N2—C5—C4—C3173.5 (3)
O4—C11—C6—C7−179.7 (2)N2—C5—C4—S1−5.6 (3)
C10—C11—C6—C7−1.0 (3)C1—S1—C4—C30.1 (2)
O4—C11—C6—N24.6 (3)C1—S1—C4—C5179.4 (2)
C10—C11—C6—N2−176.7 (2)O4—C11—C10—C9178.8 (2)
C7—C6—N2—C533.7 (4)C6—C11—C10—C90.2 (4)
C11—C6—N2—C5−150.8 (2)C8—C9—C10—C110.1 (4)
C4—S1—C1—C2−0.4 (2)C5—C4—C3—C2−179.0 (2)
C4—S1—C1—N1179.1 (2)S1—C4—C3—C20.2 (3)
C6—C7—C8—C9−1.2 (4)N1—C1—C2—C3−178.9 (2)
C2—C1—N1—O1−2.5 (4)S1—C1—C2—C30.6 (3)
S1—C1—N1—O1178.03 (18)C4—C3—C2—C1−0.5 (3)
C2—C1—N1—O2177.5 (2)
Cg2 is the centroid of the C6–C11 ring.
D—H···AD—HH···AD···AD—H···A
C10—H10···Cg2i0.932.773.605 (3)149
Table 1

Hydrogen-bond geometry (Å, °)

Cg2 is the centroid of the C6–C11 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C10—H10⋯Cg2i0.932.773.605 (3)149

Symmetry code: (i) .

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