Literature DB >> 22346995

4,5-Dihydro-cyclo-penta-[b]thio-phen-6-one.

Lyall R Hanton1, Stephen C Moratti, Zheng Shi, Jim Simpson.   

Abstract

The title compound, C(7)H(6)OS, crystallizes with two similar mol-ecules, 1 and 2, in the asymmetric unit. Both mol-ecules are essentially planar with r.m.s. deviations of 0.0193 and 0.0107 Å for the planes through the nine non-H atoms of mol-ecules 1 and 2, respectively. The thio-phene and 4,5-dihydro-cyclo-penta-dienone rings are inclined at 2.40 (13)° in 1 and 0.64 (13)° in 2. In the crystal structure π-π [3.6542 (17) Å] and C-H⋯π contacts stack the mol-ecules into columns in an inverse fashion along the b axis. An extensive series of C-H⋯O hydrogen bonds links the columns, generating an extended network structure.

Entities:  

Year:  2012        PMID: 22346995      PMCID: PMC3275050          DOI: 10.1107/S1600536811056042

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For low band-gap and fluorescent applications of conjugated thio­phene vinyl­ene oligomers, see: Blanchard et al. (1997 ▶, 1998a ▶,b ▶, 2006 ▶). For control of the band-gap in the corres­ponding polymers, see: Roncali et al. (1994 ▶). For standard bond lengths, see: Allen et al. (1987 ▶). For related structures, see: Chang et al. (2004 ▶); Bonini et al. (2004 ▶). For the synthetic route to the starting material, methyl 6-oxo-5,6-dihydro-4H-cyclo­penta­[b]thio­phene-5-carboxyl­ate, see: Cai et al. (2002 ▶); More & Finney (2002 ▶); Yang (2009 ▶).

Experimental

Crystal data

C7H6OS M = 138.18 Triclinic, a = 6.6133 (9) Å b = 7.4894 (11) Å c = 13.3213 (16) Å α = 83.247 (8)° β = 86.097 (7)° γ = 71.363 (8)° V = 620.54 (14) Å3 Z = 4 Mo Kα radiation μ = 0.42 mm−1 T = 92 K 0.55 × 0.28 × 0.02 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2011 ▶) T min = 0.617, T max = 0.745 5251 measured reflections 1522 independent reflections 1264 reflections with I > 2σ(I) R int = 0.040 θmax = 22.1°

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.119 S = 1.11 1522 reflections 163 parameters H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.34 e Å−3 Data collection: APEX2 (Bruker, 2011 ▶); cell refinement: APEX2 (Bruker, 2011 ▶) and SAINT (Bruker, 2011 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶) and TITAN2000 (Hunter & Simpson, 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶) and TITAN2000; molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97, enCIFer (Allen et al., 2004 ▶), PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811056042/tk5042sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811056042/tk5042Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811056042/tk5042Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H6OSZ = 4
Mr = 138.18F(000) = 288
Triclinic, P1Dx = 1.479 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.6133 (9) ÅCell parameters from 1413 reflections
b = 7.4894 (11) Åθ = 3.1–22.0°
c = 13.3213 (16) ŵ = 0.42 mm1
α = 83.247 (8)°T = 92 K
β = 86.097 (7)°Rectangular plate, yellow
γ = 71.363 (8)°0.55 × 0.28 × 0.02 mm
V = 620.54 (14) Å3
Bruker APEXII CCD area-detector diffractometer1522 independent reflections
Radiation source: fine-focus sealed tube1264 reflections with I > 2σ(I)
graphiteRint = 0.040
ω scansθmax = 22.1°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Bruker, 2011)h = −6→6
Tmin = 0.617, Tmax = 0.745k = −7→7
5251 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.119H-atom parameters constrained
S = 1.11w = 1/[σ2(Fo2) + (0.0713P)2 + 0.0126P] where P = (Fo2 + 2Fc2)/3
1522 reflections(Δ/σ)max < 0.001
163 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.34 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.46716 (12)0.59750 (11)0.65016 (6)0.0210 (3)
C120.6994 (5)0.5881 (4)0.5819 (2)0.0205 (8)
H120.70310.64650.51480.025*
C130.8795 (5)0.4873 (4)0.6343 (2)0.0196 (8)
H131.02130.46680.60780.024*
C140.9491 (5)0.3065 (4)0.8221 (2)0.0193 (8)
H14A1.04530.37050.84470.023*
H14B1.03450.17740.80640.023*
C150.7725 (5)0.2999 (4)0.9031 (2)0.0196 (8)
H15A0.78310.16700.92670.023*
H15B0.78720.36370.96190.023*
C160.5581 (5)0.4015 (4)0.8544 (2)0.0195 (8)
O10.3814 (3)0.4238 (3)0.89458 (15)0.0248 (6)
C170.6113 (5)0.4662 (4)0.7517 (2)0.0176 (8)
C180.8269 (5)0.4181 (4)0.7325 (2)0.0165 (7)
S20.47328 (13)0.09696 (11)0.12918 (6)0.0222 (3)
C220.2153 (5)0.2131 (4)0.0920 (2)0.0228 (8)
H220.18140.27820.02660.027*
C230.0655 (5)0.2020 (4)0.1654 (2)0.0223 (8)
H23−0.08400.25740.15740.027*
C240.0802 (5)0.0432 (4)0.3591 (2)0.0198 (8)
H24A−0.0149−0.03450.35580.024*
H24B0.00240.15680.39370.024*
C250.2881 (5)−0.0727 (4)0.4135 (2)0.0185 (8)
H25A0.3004−0.01460.47490.022*
H25B0.2877−0.20400.43390.022*
C260.4739 (5)−0.0725 (4)0.3396 (2)0.0170 (8)
O20.6635 (3)−0.1458 (3)0.35756 (15)0.0232 (6)
C270.3776 (5)0.0332 (4)0.2462 (2)0.0181 (8)
C280.1598 (5)0.0976 (4)0.2551 (2)0.0181 (8)
U11U22U33U12U13U23
S10.0114 (5)0.0241 (6)0.0242 (5)−0.0009 (4)−0.0045 (4)−0.0007 (4)
C120.0189 (19)0.0248 (19)0.0193 (17)−0.0099 (15)−0.0005 (14)0.0000 (14)
C130.0099 (18)0.0216 (18)0.0250 (19)−0.0011 (14)0.0014 (14)−0.0048 (14)
C140.0125 (18)0.0215 (19)0.0229 (18)−0.0037 (14)−0.0018 (14)−0.0020 (14)
C150.0166 (19)0.0200 (18)0.0207 (17)−0.0040 (14)−0.0017 (14)−0.0011 (14)
C160.016 (2)0.0171 (19)0.0265 (18)−0.0050 (15)−0.0030 (16)−0.0075 (14)
O10.0106 (14)0.0311 (14)0.0318 (13)−0.0052 (10)0.0044 (11)−0.0061 (10)
C170.0100 (18)0.0170 (18)0.0236 (17)−0.0007 (14)−0.0049 (13)−0.0014 (14)
C180.0117 (18)0.0167 (17)0.0217 (18)−0.0041 (13)0.0000 (13)−0.0049 (14)
S20.0177 (6)0.0271 (6)0.0217 (5)−0.0079 (4)0.0016 (4)−0.0014 (4)
C220.023 (2)0.0224 (19)0.0212 (18)−0.0055 (15)−0.0037 (15)0.0044 (14)
C230.0154 (19)0.0226 (19)0.0283 (19)−0.0038 (15)−0.0057 (16)−0.0032 (15)
C240.0124 (18)0.0219 (18)0.0239 (18)−0.0038 (14)−0.0001 (14)−0.0025 (14)
C250.0167 (19)0.0197 (18)0.0176 (17)−0.0037 (14)−0.0044 (14)0.0013 (14)
C260.015 (2)0.0152 (17)0.0217 (18)−0.0043 (14)−0.0002 (14)−0.0057 (13)
O20.0094 (14)0.0281 (14)0.0284 (13)−0.0010 (10)−0.0032 (10)−0.0003 (10)
C270.0125 (19)0.0203 (19)0.0222 (17)−0.0049 (14)0.0008 (14)−0.0064 (14)
C280.0138 (18)0.0189 (18)0.0221 (18)−0.0047 (14)−0.0013 (14)−0.0052 (14)
S1—C121.716 (3)S2—C271.716 (3)
S1—C171.723 (3)S2—C221.726 (3)
C12—C131.375 (4)C22—C231.359 (4)
C12—H120.9500C22—H220.9500
C13—C181.412 (4)C23—C281.413 (4)
C13—H130.9500C23—H230.9500
C14—C181.497 (4)C24—C281.506 (4)
C14—C151.543 (4)C24—C251.547 (4)
C14—H14A0.9900C24—H24A0.9900
C14—H14B0.9900C24—H24B0.9900
C15—C161.526 (4)C25—C261.522 (4)
C15—H15A0.9900C25—H25A0.9900
C15—H15B0.9900C25—H25B0.9900
C16—O11.221 (4)C26—O21.225 (4)
C16—C171.456 (4)C26—C271.461 (4)
C17—C181.368 (4)C27—C281.366 (4)
C12—S1—C1790.47 (15)C27—S2—C2289.93 (15)
C13—C12—S1113.1 (2)C23—C22—S2113.3 (2)
C13—C12—H12123.5C23—C22—H22123.3
S1—C12—H12123.5S2—C22—H22123.3
C12—C13—C18111.3 (3)C22—C23—C28111.6 (3)
C12—C13—H13124.3C22—C23—H23124.2
C18—C13—H13124.3C28—C23—H23124.2
C18—C14—C15103.4 (2)C28—C24—C25103.1 (2)
C18—C14—H14A111.1C28—C24—H24A111.1
C15—C14—H14A111.1C25—C24—H24A111.1
C18—C14—H14B111.1C28—C24—H24B111.1
C15—C14—H14B111.1C25—C24—H24B111.1
H14A—C14—H14B109.0H24A—C24—H24B109.1
C16—C15—C14107.4 (2)C26—C25—C24107.4 (2)
C16—C15—H15A110.2C26—C25—H25A110.2
C14—C15—H15A110.2C24—C25—H25A110.2
C16—C15—H15B110.2C26—C25—H25B110.2
C14—C15—H15B110.2C24—C25—H25B110.2
H15A—C15—H15B108.5H25A—C25—H25B108.5
O1—C16—C17128.2 (3)O2—C26—C27128.6 (3)
O1—C16—C15126.6 (3)O2—C26—C25125.8 (3)
C17—C16—C15105.1 (3)C27—C26—C25105.6 (3)
C18—C17—C16112.5 (3)C28—C27—C26112.0 (3)
C18—C17—S1112.4 (2)C28—C27—S2112.9 (2)
C16—C17—S1135.1 (2)C26—C27—S2135.1 (2)
C17—C18—C13112.7 (3)C27—C28—C23112.3 (3)
C17—C18—C14111.5 (3)C27—C28—C24111.8 (3)
C13—C18—C14135.8 (3)C23—C28—C24135.8 (3)
Cg1 and Cg4 are the centroids of the S1,C12,C13,C17,C18 and S2,C22,C23,C27,C28 thiophene rings, respectively.
D—H···AD—HH···AD···AD—H···A
C14—H14A···O1i0.992.523.473 (4)160.
C15—H15B···O1ii0.992.593.489 (3)151.
C12—H12···O2iii0.952.433.370 (4)168.
C13—H13···O2iv0.952.653.275 (4)124.
C23—H23···O1v0.952.623.425 (4)143.
C24—H24A···O2vi0.992.523.480 (4)164.
C25—H25A···O2vii0.992.713.704 (3)180.
C25—H25B···Cg1viii0.992.793.561 (3)135
C15—H15A···Cg4iii0.992.843.571 (3)131
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg4 are the centroids of the S1,C12,C13,C17,C18 and S2,C22,C23,C27,C28 thio­phene rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
C14—H14A⋯O1i0.992.523.473 (4)160
C15—H15B⋯O1ii0.992.593.489 (3)151
C12—H12⋯O2iii0.952.433.370 (4)168
C13—H13⋯O2iv0.952.653.275 (4)124
C23—H23⋯O1v0.952.623.425 (4)143
C24—H24A⋯O2vi0.992.523.480 (4)164
C25—H25A⋯O2vii0.992.713.704 (3)180
C25—H25BCg1viii0.992.793.561 (3)135
C15—H15ACg4iii0.992.843.571 (3)131

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) ; (viii) .

  7 in total

1.  Fine tuning of the electronic properties of linear pi-conjugated oligomers by covalent bridging.

Authors:  Philippe Blanchard; Patrick Verlhac; Laurent Michaux; Pierre Frère; Jean Roncali
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2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Dramatic rate acceleration of the Baylis-Hillman reaction in homogeneous medium in the presence of water.

Authors:  Juexiao Cai; Zhenghong Zhou; Guofeng Zhao; Chuchi Tang
Journal:  Org Lett       Date:  2002-12-26       Impact factor: 6.005

4.  Bridged Dithienylethylenes as Precursors of Small Bandgap Electrogenerated Conjugated Polymers.

Authors:  Philippe Blanchard; Hugues Brisset; Bertrand Illien; Amédée Riou; Jean Roncali
Journal:  J Org Chem       Date:  1997-04-18       Impact factor: 4.354

5.  Cobalt-catalyzed regioselective carbocyclization reaction of o-iodophenyl ketones and aldehydes with alkynes, acrylates, and acrylonitrile: a facile route to indenols and indenes.

Authors:  Kuo-Jui Chang; Dinesh Kumar Rayabarapu; Chien-Hong Cheng
Journal:  J Org Chem       Date:  2004-07-09       Impact factor: 4.354

6.  A simple and advantageous protocol for the oxidation of alcohols with O-iodoxybenzoic acid (IBX).

Authors:  Jesse D More; Nathaniel S Finney
Journal:  Org Lett       Date:  2002-08-22       Impact factor: 6.005

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total

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