Literature DB >> 22346954

2,3,4,6-Tetra-O-acetyl-β-d-galacto-pyrano-syl butyrate.

Yan-Li Cui, Ming-Han Xu, Jian-Wei Mao, Yong-Ping Yu.   

Abstract

The title compound, C(18)H(26)O(11), was synthesized by a condensation reaction of 2,3,4,6-tetra-O-acetyl-α-d-galactopyranosyl bromide and butyric acid. The acet-oxy-methyl and butyrate groups are located on the same side of the pyran ring, showing the β configuration for the d-glycosyl ester; the butyl group adopts an extend conformation, the C-C-C-C torsion angle being 179.1 (7)°. In the crystal, the mol-ecules are linked by weak C-H⋯O hydrogen bonds.

Entities:  

Year:  2012        PMID: 22346954      PMCID: PMC3275009          DOI: 10.1107/S1600536811055814

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the total synthesis of glycosyl esters, see: Li et al. (1992 ▶); Smith et al. (1986 ▶). For the anti-tumor activities of glycosyl esters, see: Feldman et al. (2000 ▶). For related structures, see: Sambaiah et al. (2001 ▶); Parkanyi et al. (1987 ▶); Roslund et al. (2004 ▶); Liu et al. (2009 ▶); Kumar et al. (2005) ▶. For the synthesis, see: Loganathan & Trivedi (1987 ▶).

Experimental

Crystal data

C18H26O11 M = 418.39 Monoclinic, a = 9.2079 (9) Å b = 8.5034 (5) Å c = 14.3199 (12) Å β = 100.804 (9)° V = 1101.35 (16) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 294 K 0.38 × 0.32 × 0.25 mm

Data collection

Oxford Diffraction Xcalibur Atlas Gemini Ultra diffractometer 6393 measured reflections 2160 independent reflections 1582 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.147 S = 1.03 2160 reflections 268 parameters 1 restraint H-atom parameters constrained Δρmax = 0.35 e Å−3 Δρmin = −0.21 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2007 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis RED (Oxford Diffraction, 2007 ▶); program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811055814/xu5405sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811055814/xu5405Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811055814/xu5405Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H26O11F(000) = 444
Mr = 418.39Dx = 1.262 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 3799 reflections
a = 9.2079 (9) Åθ = 3.2–26.4°
b = 8.5034 (5) ŵ = 0.11 mm1
c = 14.3199 (12) ÅT = 294 K
β = 100.804 (9)°Block, colorless
V = 1101.35 (16) Å30.38 × 0.32 × 0.25 mm
Z = 2
Oxford Diffraction Xcalibur Atlas Gemini ultra diffractometer1582 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.028
graphiteθmax = 25.4°, θmin = 2.9°
Detector resolution: 10.3592 pixels mm-1h = −11→8
ω scansk = −10→9
6393 measured reflectionsl = −16→17
2160 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.048H-atom parameters constrained
wR(F2) = 0.147w = 1/[σ2(Fo2) + (0.0855P)2 + 0.0985P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.002
2160 reflectionsΔρmax = 0.35 e Å3
268 parametersΔρmin = −0.21 e Å3
1 restraintExtinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.022 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.1960 (3)0.9067 (3)0.2033 (2)0.0627 (8)
O20.2171 (3)0.8828 (4)0.3617 (2)0.0669 (8)
O3−0.0223 (5)0.8472 (6)0.3587 (3)0.1095 (14)
O40.2776 (3)1.2097 (3)0.3854 (2)0.0599 (7)
O50.4753 (4)1.1092 (5)0.4784 (2)0.0989 (13)
O60.4015 (3)1.3413 (3)0.23619 (19)0.0606 (7)
O70.2592 (4)1.5007 (4)0.1320 (3)0.0843 (10)
O80.4303 (3)1.0527 (3)0.13984 (19)0.0607 (7)
O90.5101 (5)1.2274 (5)0.0433 (3)0.1129 (15)
O100.1343 (4)1.0060 (4)−0.0433 (2)0.0778 (9)
O110.0730 (4)0.8056 (4)−0.1411 (2)0.0833 (10)
C10.1872 (5)0.9923 (5)0.2865 (3)0.0579 (10)
H10.08831.03750.28240.069*
C20.3038 (4)1.1195 (5)0.3053 (3)0.0516 (9)
H20.40301.07310.31850.062*
C30.2868 (4)1.2263 (4)0.2199 (3)0.0524 (10)
H30.19121.28000.21270.063*
C40.2904 (4)1.1312 (5)0.1311 (3)0.0553 (10)
H40.27411.19990.07510.066*
C50.1711 (5)1.0062 (5)0.1214 (3)0.0592 (10)
H50.07491.05790.11710.071*
C60.1034 (6)0.8206 (6)0.3940 (3)0.0691 (12)
C70.1506 (7)0.7109 (7)0.4739 (3)0.0898 (16)
H7A0.23960.65580.46580.108*
H7B0.07370.63380.47640.108*
C80.1820 (10)0.8143 (11)0.5717 (4)0.139 (3)
H8A0.25910.89070.56830.166*
H8B0.09310.87140.57790.166*
C90.2258 (9)0.7182 (11)0.6526 (4)0.135 (3)
H9A0.31780.66770.64900.202*
H9B0.15150.63980.65480.202*
H9C0.23780.78170.70900.202*
C100.3699 (5)1.1938 (6)0.4686 (3)0.0640 (11)
C110.3271 (7)1.2933 (7)0.5437 (3)0.0857 (15)
H11A0.23951.35160.51770.129*
H11B0.40591.36500.56740.129*
H11C0.30801.22800.59470.129*
C120.3736 (6)1.4773 (5)0.1855 (4)0.0698 (12)
C130.4984 (7)1.5887 (8)0.2062 (5)0.114 (2)
H13A0.57981.53960.24760.171*
H13B0.46831.68070.23640.171*
H13C0.52831.61820.14790.171*
C140.1652 (6)0.9010 (6)0.0361 (3)0.0709 (12)
H14A0.25900.84790.03810.085*
H14B0.08780.82290.03310.085*
C150.5298 (5)1.1116 (6)0.0906 (3)0.0697 (12)
C160.6667 (5)1.0135 (6)0.1061 (4)0.0839 (15)
H16A0.71051.01350.17240.126*
H16B0.73561.05620.07010.126*
H16C0.64200.90770.08560.126*
C170.0882 (5)0.9440 (6)−0.1293 (3)0.0653 (12)
C180.0590 (7)1.0649 (8)−0.2023 (3)0.0884 (15)
H18A0.14221.1347−0.19600.133*
H18B−0.02741.1233−0.19500.133*
H18C0.04291.0165−0.26390.133*
U11U22U33U12U13U23
O10.0752 (19)0.0537 (15)0.0613 (17)−0.0060 (14)0.0180 (14)0.0060 (14)
O20.0644 (18)0.0700 (19)0.0679 (18)−0.0023 (15)0.0161 (14)0.0242 (16)
O30.083 (3)0.128 (4)0.126 (3)−0.001 (2)0.042 (2)0.034 (3)
O40.0617 (17)0.0651 (17)0.0542 (15)0.0114 (14)0.0146 (12)0.0022 (14)
O50.084 (2)0.123 (3)0.082 (2)0.028 (3)−0.0029 (19)−0.015 (2)
O60.0665 (18)0.0549 (16)0.0591 (15)−0.0089 (13)0.0083 (13)0.0000 (14)
O70.088 (2)0.068 (2)0.093 (2)−0.0005 (18)0.008 (2)0.0190 (19)
O80.0660 (18)0.0577 (15)0.0618 (16)0.0012 (13)0.0209 (13)0.0072 (14)
O90.110 (3)0.112 (3)0.131 (3)0.010 (3)0.061 (3)0.055 (3)
O100.106 (2)0.0663 (19)0.0575 (17)−0.0130 (18)0.0052 (16)0.0012 (16)
O110.086 (2)0.080 (2)0.079 (2)0.0041 (19)0.0024 (17)−0.0216 (19)
C10.056 (2)0.061 (2)0.056 (2)0.002 (2)0.0102 (18)0.009 (2)
C20.053 (2)0.053 (2)0.049 (2)0.0056 (18)0.0099 (16)0.0022 (18)
C30.050 (2)0.052 (2)0.054 (2)0.0009 (18)0.0065 (17)0.0065 (18)
C40.060 (2)0.053 (2)0.052 (2)0.0007 (19)0.0090 (17)0.0099 (19)
C50.070 (3)0.053 (2)0.054 (2)−0.006 (2)0.0084 (19)0.0048 (19)
C60.075 (3)0.073 (3)0.063 (3)−0.003 (3)0.023 (2)0.005 (2)
C70.103 (4)0.091 (3)0.076 (3)−0.020 (3)0.018 (3)0.024 (3)
C80.197 (9)0.135 (6)0.081 (4)0.022 (6)0.016 (5)0.021 (4)
C90.153 (7)0.160 (8)0.095 (4)−0.013 (6)0.033 (4)−0.010 (5)
C100.063 (3)0.070 (3)0.062 (3)−0.003 (2)0.018 (2)0.004 (2)
C110.114 (4)0.087 (3)0.061 (3)−0.007 (3)0.028 (3)−0.007 (3)
C120.082 (3)0.056 (3)0.075 (3)−0.010 (2)0.023 (3)0.002 (2)
C130.125 (5)0.087 (4)0.122 (5)−0.041 (4)0.005 (4)0.014 (4)
C140.089 (3)0.057 (2)0.064 (3)−0.008 (2)0.007 (2)0.004 (2)
C150.078 (3)0.065 (3)0.073 (3)−0.014 (2)0.030 (2)−0.003 (3)
C160.075 (3)0.080 (3)0.106 (4)0.000 (3)0.040 (3)−0.010 (3)
C170.059 (3)0.076 (3)0.061 (3)−0.004 (2)0.012 (2)−0.006 (2)
C180.097 (4)0.101 (4)0.066 (3)0.002 (3)0.012 (3)0.005 (3)
O1—C11.412 (5)C7—C81.634 (9)
O1—C51.429 (5)C7—H7A0.9700
O2—C61.331 (5)C7—H7B0.9700
O2—C11.412 (5)C8—C91.413 (9)
O3—C61.195 (6)C8—H8A0.9700
O4—C101.334 (5)C8—H8B0.9700
O4—C21.437 (5)C9—H9A0.9600
O5—C101.195 (6)C9—H9B0.9600
O6—C121.363 (5)C9—H9C0.9600
O6—C31.426 (5)C10—C111.478 (7)
O7—C121.197 (6)C11—H11A0.9600
O8—C151.353 (5)C11—H11B0.9600
O8—C41.435 (5)C11—H11C0.9600
O9—C151.190 (6)C12—C131.476 (7)
O10—C171.334 (5)C13—H13A0.9600
O10—C141.432 (5)C13—H13B0.9600
O11—C171.193 (6)C13—H13C0.9600
C1—C21.513 (6)C14—H14A0.9700
C1—H10.9800C14—H14B0.9700
C2—C31.507 (5)C15—C161.492 (7)
C2—H20.9800C16—H16A0.9600
C3—C41.513 (6)C16—H16B0.9600
C3—H30.9800C16—H16C0.9600
C4—C51.516 (6)C17—C181.454 (7)
C4—H40.9800C18—H18A0.9600
C5—C141.506 (6)C18—H18B0.9600
C5—H50.9800C18—H18C0.9600
C6—C71.477 (7)
C1—O1—C5111.2 (3)H8A—C8—H8B108.0
C6—O2—C1118.3 (3)C8—C9—H9A109.5
C10—O4—C2119.0 (3)C8—C9—H9B109.5
C12—O6—C3115.7 (3)H9A—C9—H9B109.5
C15—O8—C4117.8 (3)C8—C9—H9C109.5
C17—O10—C14118.0 (4)H9A—C9—H9C109.5
O2—C1—O1105.7 (3)H9B—C9—H9C109.5
O2—C1—C2107.8 (3)O5—C10—O4122.2 (4)
O1—C1—C2111.6 (3)O5—C10—C11125.5 (4)
O2—C1—H1110.6O4—C10—C11112.3 (4)
O1—C1—H1110.6C10—C11—H11A109.5
C2—C1—H1110.6C10—C11—H11B109.5
O4—C2—C3108.6 (3)H11A—C11—H11B109.5
O4—C2—C1107.7 (3)C10—C11—H11C109.5
C3—C2—C1108.9 (3)H11A—C11—H11C109.5
O4—C2—H2110.5H11B—C11—H11C109.5
C3—C2—H2110.5O7—C12—O6122.5 (4)
C1—C2—H2110.5O7—C12—C13125.5 (5)
O6—C3—C2108.6 (3)O6—C12—C13112.0 (4)
O6—C3—C4111.8 (3)C12—C13—H13A109.5
C2—C3—C4110.2 (3)C12—C13—H13B109.5
O6—C3—H3108.7H13A—C13—H13B109.5
C2—C3—H3108.7C12—C13—H13C109.5
C4—C3—H3108.7H13A—C13—H13C109.5
O8—C4—C3109.6 (3)H13B—C13—H13C109.5
O8—C4—C5107.7 (3)O10—C14—C5104.2 (3)
C3—C4—C5108.8 (3)O10—C14—H14A110.9
O8—C4—H4110.2C5—C14—H14A110.9
C3—C4—H4110.2O10—C14—H14B110.9
C5—C4—H4110.2C5—C14—H14B110.9
O1—C5—C14106.8 (3)H14A—C14—H14B108.9
O1—C5—C4109.7 (3)O9—C15—O8123.8 (5)
C14—C5—C4113.9 (4)O9—C15—C16125.6 (5)
O1—C5—H5108.8O8—C15—C16110.6 (4)
C14—C5—H5108.8C15—C16—H16A109.5
C4—C5—H5108.8C15—C16—H16B109.5
O3—C6—O2122.7 (4)H16A—C16—H16B109.5
O3—C6—C7124.6 (5)C15—C16—H16C109.5
O2—C6—C7112.6 (5)H16A—C16—H16C109.5
C6—C7—C8107.7 (5)H16B—C16—H16C109.5
C6—C7—H7A110.2O11—C17—O10121.9 (5)
C8—C7—H7A110.2O11—C17—C18126.5 (5)
C6—C7—H7B110.2O10—C17—C18111.6 (4)
C8—C7—H7B110.2C17—C18—H18A109.5
H7A—C7—H7B108.5C17—C18—H18B109.5
C9—C8—C7111.6 (7)H18A—C18—H18B109.5
C9—C8—H8A109.3C17—C18—H18C109.5
C7—C8—H8A109.3H18A—C18—H18C109.5
C9—C8—H8B109.3H18B—C18—H18C109.5
C7—C8—H8B109.3
C6—O2—C1—O1−99.1 (4)C1—O1—C5—C14−173.6 (3)
C6—O2—C1—C2141.5 (4)C1—O1—C5—C462.5 (4)
C5—O1—C1—O2−178.6 (3)O8—C4—C5—O159.6 (4)
C5—O1—C1—C2−61.7 (4)C3—C4—C5—O1−59.2 (4)
C10—O4—C2—C3−134.7 (4)O8—C4—C5—C14−60.1 (4)
C10—O4—C2—C1107.5 (4)C3—C4—C5—C14−178.9 (3)
O2—C1—C2—O4−69.9 (4)C1—O2—C6—O34.1 (7)
O1—C1—C2—O4174.5 (3)C1—O2—C6—C7−178.8 (4)
O2—C1—C2—C3172.6 (3)O3—C6—C7—C8−96.6 (7)
O1—C1—C2—C357.0 (4)O2—C6—C7—C886.3 (6)
C12—O6—C3—C2−156.7 (3)C6—C7—C8—C9179.1 (7)
C12—O6—C3—C481.5 (4)C2—O4—C10—O51.4 (7)
O4—C2—C3—O665.8 (4)C2—O4—C10—C11−179.6 (4)
C1—C2—C3—O6−177.2 (3)C3—O6—C12—O71.4 (6)
O4—C2—C3—C4−171.4 (3)C3—O6—C12—C13−179.5 (5)
C1—C2—C3—C4−54.4 (4)C17—O10—C14—C5−164.4 (4)
C15—O8—C4—C3−104.4 (4)O1—C5—C14—O10177.8 (3)
C15—O8—C4—C5137.4 (4)C4—C5—C14—O10−60.9 (5)
O6—C3—C4—O859.4 (4)C4—O8—C15—O92.7 (7)
C2—C3—C4—O8−61.5 (4)C4—O8—C15—C16−178.6 (4)
O6—C3—C4—C5177.0 (3)C14—O10—C17—O11−0.2 (7)
C2—C3—C4—C556.1 (4)C14—O10—C17—C18179.0 (4)
D—H···AD—HH···AD···AD—H···A
C3—H3···O11i0.982.473.362 (5)152
C5—H5···O11i0.982.573.443 (6)149
C11—H11B···O5ii0.962.493.293 (7)141
C16—H16C···O9iii0.962.603.441 (7)147
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3⋯O11i0.982.473.362 (5)152
C5—H5⋯O11i0.982.573.443 (6)149
C11—H11B⋯O5ii0.962.493.293 (7)141
C16—H16C⋯O9iii0.962.603.441 (7)147

Symmetry codes: (i) ; (ii) ; (iii) .

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